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2FL5
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Cofactor-containing antibodies: Crystal structure of the original yellow antibody
Descriptor: Immunoglobulin Igg1 Heavy chain, Immunoglobulin Igg1 Lambda Light Chain, RIBOFLAVIN
Authors:Zhu, X, Wilson, I.A.
Deposit date:2006-01-05
Release date:2006-02-21
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3 Å)
Cite:Cofactor-containing antibodies: Crystal structure of the original yellow antibody.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2FG0
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Crystal structure of a putative gamma-d-glutamyl-l-diamino acid endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.79 A resolution
Descriptor: COG0791: Cell wall-associated hydrolases (invasion-associated proteins), GLYCEROL
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2005-12-20
Release date:2006-01-10
Last modified:2023-01-25
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Structural Basis of Murein Peptide Specificity of a gamma-D-Glutamyl-L-Diamino Acid Endopeptidase.
Structure, 17, 2009
2ETJ
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Crystal structure of Ribonuclease HII (EC 3.1.26.4) (RNase HII) (tm0915) from THERMOTOGA MARITIMA at 1.74 A resolution
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2005-10-27
Release date:2005-11-08
Last modified:2023-01-25
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Crystal structure of Ribonuclease HII (EC 3.1.26.4) (RNase HII) (tm0915) from THERMOTOGA MARITIMA at 1.74 A resolution
To be published
2FKF
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Phosphomannomutase/Phosphoglucomutase from Pseudomonas aeruginosa with alpha-D-glucose 1,6-bisphosphate bound
Descriptor: 1,6-di-O-phosphono-alpha-D-glucopyranose, Phosphomannomutase/phosphoglucomutase, ZINC ION
Authors:Regni, C.A, Beamer, L.J.
Deposit date:2006-01-04
Release date:2006-04-04
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:The reaction of phosphohexomutase from Pseudomonas aeruginosa: structural insights into a simple processive enzyme.
J.Biol.Chem., 281, 2006
2F2H
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BU of 2f2h by Molmil
Structure of the YicI thiosugar Michaelis complex
Descriptor: 3[N-MORPHOLINO]PROPANE SULFONIC ACID, 4-NITROPHENYL 6-THIO-6-S-ALPHA-D-XYLOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE, GLYCEROL, ...
Authors:Kim, Y.-W, Lovering, A.L, Strynadka, N.C.J, Withers, S.G.
Deposit date:2005-11-16
Release date:2006-02-28
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Expanding the Thioglycoligase Strategy to the Synthesis of alpha-linked Thioglycosides Allows Structural Investigation of the Parent Enzyme/Substrate Complex
J.Am.Chem.Soc., 128, 2006
2EUX
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Structure of a Ndt80-DNA complex (MSE VARIANT vA4G)
Descriptor: 5'-D(*AP*GP*TP*TP*TP*TP*TP*GP*CP*GP*TP*CP*GP*C)-3', 5'-D(*TP*GP*CP*GP*AP*CP*GP*CP*AP*AP*AP*AP*AP*C)-3', NDT80 protein
Authors:Lamoureux, J.S, Glover, J.N.
Deposit date:2005-10-30
Release date:2006-03-21
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Principles of Protein-DNA Recognition Revealed in the Structural Analysis of Ndt80-MSE DNA Complexes.
Structure, 14, 2006
2F78
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BenM effector binding domain with its effector benzoate
Descriptor: BENZOIC ACID, HTH-type transcriptional regulator benM
Authors:Clark, T, Haddad, S, Ezezika, O, Neidle, E, Momany, C.
Deposit date:2005-11-30
Release date:2006-10-31
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Distinct Effector-binding Sites Enable Synergistic Transcriptional Activation by BenM, a LysR-type Regulator.
J.Mol.Biol., 367, 2007
2EVR
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BU of 2evr by Molmil
CRYSTAL STRUCTURE OF A PUTATIVE GAMMA-D-GLUTAMYL-L-DIAMINO ACID ENDOPEPTIDASE (NPUN_R0659) FROM NOSTOC PUNCTIFORME PCC 73102 AT 1.60 A RESOLUTION
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, COG0791: Cell wall-associated hydrolases (invasion-associated proteins), ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2005-10-31
Release date:2005-11-22
Last modified:2023-01-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural Basis of Murein Peptide Specificity of a gamma-D-Glutamyl-L-Diamino Acid Endopeptidase.
Structure, 17, 2009
2FDH
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Crystal Structure of AlkB in complex with Mn(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T
Descriptor: 2-OXOGLUTARIC ACID, 5'-D(P*TP*(MA7)P*T)-3', Alkylated DNA repair protein alkB, ...
Authors:Yu, B, Benach, J, Edstrom, W.C, Gibney, B.R, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2005-12-14
Release date:2006-02-21
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of catalytic complexes of the oxidative DNA/RNA repair enzyme AlkB.
Nature, 439, 2006
2FEA
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BU of 2fea by Molmil
Crystal structure of MtnX phosphatase from Bacillus Subtilis at 2.00 A resolution
Descriptor: 1,2-ETHANEDIOL, 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase, MAGNESIUM ION, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2005-12-15
Release date:2005-12-27
Last modified:2023-01-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of MtnX phosphatase from Bacillus subtilis at 2.0 A resolution provides a structural basis for bipartite phosphomonoester hydrolysis of 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate.
Proteins, 69, 2007
2ERZ
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BU of 2erz by Molmil
Crystal Structure of c-AMP Dependent Kinase (PKA) bound to hydroxyfasudil
Descriptor: 1-(1-HYDROXY-5-ISOQUINOLINESULFONYL)HOMOPIPERAZINE, cAMP-dependent protein kinase inhibitor, alpha form, ...
Authors:Jacobs, M.
Deposit date:2005-10-25
Release date:2005-11-08
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The Structure of Dimeric ROCK I Reveals the Mechanism for Ligand Selectivity.
J.Biol.Chem., 281, 2006
2EUV
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Principles of protein-DNA recognition revealed in the structural analysis of Ndt80-MSE DNA complexes
Descriptor: 5'-D(*AP*GP*TP*AP*TP*TP*TP*GP*TP*GP*TP*TP*GP*C)-3', 5'-D(*TP*GP*CP*AP*AP*CP*AP*CP*AP*AP*AP*TP*AP*C)-3', NDT80 protein
Authors:Lamoureux, J.S, Glover, J.N.
Deposit date:2005-10-30
Release date:2006-03-21
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Principles of Protein-DNA Recognition Revealed in the Structural Analysis of Ndt80-MSE DNA Complexes.
Structure, 14, 2006
2EUW
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Structure of a Ndt80-DNA complex (MSE mutant mA4T)
Descriptor: 5'-D(*AP*GP*TP*TP*TP*TP*TP*GP*AP*GP*TP*CP*GP*C)-3', 5'-D(*TP*GP*CP*GP*AP*CP*TP*CP*AP*AP*AP*AP*AP*C)-3', NDT80 protein
Authors:Lamoureux, J.S, Glover, J.N.
Deposit date:2005-10-30
Release date:2006-03-21
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Principles of Protein-DNA Recognition Revealed in the Structural Analysis of Ndt80-MSE DNA Complexes.
Structure, 14, 2006
2FDC
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BU of 2fdc by Molmil
Structural Basis of DNA Damage Recognition and Processing by UvrB: crystal structure of a UvrB/DNA complex
Descriptor: 5'-D(P*CP*GP*GP*CP*TP*CP*CP*AP*TP*CP*TP*CP*TP*AP*CP*CP*GP*CP*AP*A)-3', N-[6-(ACETYLAMINO)HEXYL]-3',6'-DIHYDROXY-3-OXO-3H-SPIRO[2-BENZOFURAN-1,9'-XANTHENE]-6-CARBOXAMIDE, UvrABC system protein B
Authors:Truglio, J.J, Kisker, C.
Deposit date:2005-12-13
Release date:2006-03-14
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural basis for DNA recognition and processing by UvrB.
Nat.Struct.Mol.Biol., 13, 2006
2FFZ
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Structural Studies Examining the Substrate Specificity Profiles of PC-PLCBc Protein Variants
Descriptor: Phospholipase C, ZINC ION
Authors:Benfield, A.B, Antikainen, N.M, Martin, S.F.
Deposit date:2005-12-20
Release date:2006-03-28
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural studies examining the substrate specificity profiles of PC-PLC(Bc) protein variants.
Arch.Biochem.Biophys., 460, 2007
2EZ8
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Pyruvate oxidase variant F479W in complex with reaction intermediate 2-lactyl-thiamin diphosphate
Descriptor: 3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-2-(1-CARBOXY-1-HYDROXYETHYL)-5-(2-{[HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}ETHYL)-4-METHYL-1,3-THIAZOL-3-IUM, FLAVIN-ADENINE DINUCLEOTIDE, MAGNESIUM ION, ...
Authors:Wille, G, Meyer, D, Steinmetz, A, Hinze, E, Golbik, R, Tittmann, K.
Deposit date:2005-11-10
Release date:2006-04-25
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.963 Å)
Cite:The catalytic cycle of a thiamin diphosphate enzyme examined by cryocrystallography.
Nat.Chem.Biol., 2, 2006
2ETR
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BU of 2etr by Molmil
Crystal Structure of ROCK I bound to Y-27632
Descriptor: (R)-TRANS-4-(1-AMINOETHYL)-N-(4-PYRIDYL) CYCLOHEXANECARBOXAMIDE, Rho-associated protein kinase 1
Authors:Jacobs, M.
Deposit date:2005-10-27
Release date:2005-11-08
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The Structure of Dimeric ROCK I Reveals the Mechanism for Ligand Selectivity.
J.Biol.Chem., 281, 2006
2FCV
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SyrB2 with Fe(II), bromide, and alpha-ketoglutarate
Descriptor: ((2R,3S,4S,5S)-3,4-DIHYDROXY-5-(HYDROXYMETHYL)-5-((2R,3S,4S,5S,6R)-3,4,5-TRIHYDROXY-6-METHOXY-TETRAHYDRO-2H-PYRAN-2-YLOXY)-TETRAHYDROFURAN-2-YL)METHYL NONANOATE, 2-OXOGLUTARIC ACID, BROMIDE ION, ...
Authors:Blasiak, L.C, Drennan, C.L.
Deposit date:2005-12-12
Release date:2006-03-21
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the non-haem iron halogenase SyrB2 in syringomycin biosynthesis.
Nature, 440, 2006
2F3F
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Crystal Structure of the Bace complex with BDF488, a macrocyclic inhibitor
Descriptor: (2R,4S)-N-BUTYL-4-HYDROXY-2-METHYL- 4-((E)-(4AS,12R,15S,17AS)-15-METHYL -14,17-DIOXO-2,3,4,4A,6,9,11,12,13, 14,15,16,17,17A-TETRADECAHYDRO-1H-5 ,10-DITHIA-1,13,16-TRIAZA-BENZOCYCL OPENTADECEN-12-YL)-BUTYRAMIDE, Beta-secretase 1
Authors:Rondeau, J.-M.
Deposit date:2005-11-21
Release date:2006-09-05
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure-based design and synthesis of macroheterocyclic peptidomimetic inhibitors of the aspartic protease beta-site amyloid precursor protein cleaving enzyme (BACE).
J.Med.Chem., 49, 2006
2F3X
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Crystal structure of FapR (in complex with effector)- a global regulator of fatty acid biosynthesis in B. subtilis
Descriptor: MALONYL-COENZYME A, Transcription factor fapR
Authors:Buschiazzo, A, Guerin, M.E, Alzari, P.M.
Deposit date:2005-11-22
Release date:2006-10-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural basis of lipid biosynthesis regulation in Gram-positive bacteria.
Embo J., 25, 2006
2FJE
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adenosine-5-phosphosulfate reductase oxidized state
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, IRON/SULFUR CLUSTER, adenylylsulfate reductase, ...
Authors:Schiffer, A, Fritz, G, Kroneck, P.M, Ermler, U.
Deposit date:2006-01-02
Release date:2006-03-28
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Reaction mechanism of the iron-sulfur flavoenzyme adenosine-5'-phosphosulfate reductase based on the structural characterization of different enzymatic states
Biochemistry, 45, 2006
2FLD
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BU of 2fld by Molmil
I-MsoI Re-Designed for Altered DNA Cleavage Specificity
Descriptor: 5'-D(*CP*GP*GP*AP*AP*CP*GP*GP*TP*CP*TP*CP*AP*CP*GP*AP*CP*CP*TP*TP*CP*TP*GP*C)-3', 5'-D(*GP*CP*AP*GP*AP*AP*GP*GP*TP*CP*GP*TP*GP*AP*GP*AP*CP*CP*GP*TP*TP*CP*CP*G)-3', CALCIUM ION, ...
Authors:Ashworth, J, Duarte, C.M, Havranek, J.J, Sussman, D, Monnat, R.J, Stoddard, B.L, Baker, D.
Deposit date:2006-01-05
Release date:2006-06-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Computational redesign of endonuclease DNA binding and cleavage specificity.
Nature, 441, 2006
2EZ4
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Pyruvate oxidase variant F479W
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Wille, G, Meyer, D, Steinmetz, A, Hinze, E, Golbik, R, Tittmann, K.
Deposit date:2005-11-10
Release date:2006-04-25
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:The catalytic cycle of a thiamin diphosphate enzyme examined by cryocrystallography.
Nat.Chem.Biol., 2, 2006
2F3Z
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BU of 2f3z by Molmil
Calmodulin/IQ-AA domain complex
Descriptor: CALCIUM ION, Calmodulin, Voltage-dependent L-type calcium channel alpha-1C subunit
Authors:Fallon, J.L, Quiocho, F.A.
Deposit date:2005-11-22
Release date:2005-12-27
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of Calmodulin Bound to the Hydrophobic IQ Domain of the Cardiac Ca(v)1.2 Calcium Channel.
Structure, 13, 2005
2F46
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Crystal structure of a putative phosphatase (nma1982) from neisseria meningitidis z2491 at 1.41 A resolution
Descriptor: CHLORIDE ION, UNKNOWN LIGAND, hypothetical protein
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2005-11-22
Release date:2006-02-07
Last modified:2023-01-25
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Crystal structure of NMA1982 from Neisseria meningitidis at 1.5 A resolution provides a structural scaffold for nonclassical, eukaryotic-like phosphatases.
Proteins, 69, 2007

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