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6NR5
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BU of 6nr5 by Molmil
Human LSD1 in complex with Phenelzine sulfate
Descriptor: Lysine-specific histone demethylase 1A, [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3R,4R)-5-[(4aR)-7,8-dimethyl-2,4-dioxo-5-(2-phenylethyl)-3,4,4a,5-tetrahydrobenzo[g]pteridin-10(2H)-yl]-2,3,4-trihydroxypentyl dihydrogen diphosphate (non-preferred name)
Authors:Tan, A.H.Y, Tu, W, McCuaig, R, Donovan, T, Tsimbalyuk, S, Forwood, J.K, Rao, S.
Deposit date:2019-01-22
Release date:2019-07-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Lysine-Specific Histone Demethylase 1A Regulates Macrophage Polarization and Checkpoint Molecules in the Tumor Microenvironment of Triple-Negative Breast Cancer.
Front Immunol, 10, 2019
8VK9
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BU of 8vk9 by Molmil
Structure of UbV.d2.3 in complex with Ube2d2-S22R
Descriptor: GLYCEROL, Ubiquitin variant D2.3, Ubiquitin-conjugating enzyme E2 D2
Authors:Middleton, A.J.
Deposit date:2024-01-08
Release date:2024-09-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and biophysical characterisation of ubiquitin variants that inhibit the ubiquitin conjugating enzyme Ube2d2
To Be Published
7V0G
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BU of 7v0g by Molmil
Structure of cAMP-dependent protein kinase using a MD-MX procedure, produced using 1.63 Angstrom data
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Wych, D.C, Aoto, P.C, Wall, M.E.
Deposit date:2022-05-10
Release date:2022-12-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Molecular-dynamics simulation methods for macromolecular crystallography.
Acta Crystallogr D Struct Biol, 79, 2023
8Q3H
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BU of 8q3h by Molmil
Capra hircus reactive intermediate deaminase A mutant - A108D
Descriptor: 1,2-ETHANEDIOL, 2-iminobutanoate/2-iminopropanoate deaminase, GLYCEROL
Authors:Rizzi, G, Visentin, C, Di Pisa, F, Ricagno, S.
Deposit date:2023-08-04
Release date:2024-06-26
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Capra hircus reactive intermediate deaminase A mutant - A108D
To Be Published
6O0G
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BU of 6o0g by Molmil
M.tb MenD bound to Intermediate I and Inhibitor
Descriptor: 1,4-dihydroxy-2-naphthoic acid, 2-OXOGLUTARIC ACID, 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase, ...
Authors:Johnston, J.M, Bashiri, G, Bulloch, E.M.M, Jirgis, E.M.N, Chuang, H, Nigon, L.V, Baker, E.N.
Deposit date:2019-02-16
Release date:2020-02-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Allosteric regulation of menaquinone (vitamin K2) biosynthesis in the human pathogenMycobacterium tuberculosis.
J.Biol.Chem., 295, 2020
8WDM
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BU of 8wdm by Molmil
Crystal structure of a novel PU plastic degradation enzyme from Thermaerobacter marianensis
Descriptor: Carboxylic ester hydrolase
Authors:Li, Z.S, Wang, H, Gao, J, Chen, Y.Y, Wei, H.L, Li, Q, Han, X, Wei, R, Liu, W.D.
Deposit date:2023-09-15
Release date:2024-09-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of a novel PU plastic degradation enzyme from Thermaerobacter marianensis
To Be Published
7OBF
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BU of 7obf by Molmil
Crystal structure of the human VH antibody domain HEL4
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, HEL4, ...
Authors:Belviso, B.D, Caliandro, R, Carrozzini, B.
Deposit date:2021-04-22
Release date:2021-05-05
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.699 Å)
Cite:Crystal structure of the human VH antibody domain HEL4
To Be Published
7UYG
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BU of 7uyg by Molmil
Structure of the first OTU domain from Legionella pneumophila effector protein LotA
Descriptor: GLYCEROL, IODIDE ION, LotA
Authors:Pruneda, J.N.
Deposit date:2022-05-06
Release date:2022-12-21
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Mechanism of Lys6 poly-ubiquitin specificity by the L. pneumophila deubiquitinase LotA.
Mol.Cell, 83, 2023
8WC1
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BU of 8wc1 by Molmil
A carbohydrate binding domain of a putative pectate lyase
Descriptor: Pectate lyase family 9
Authors:Liu, G.C, Chang, Y.G.
Deposit date:2023-09-11
Release date:2024-09-18
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure of a carbohydrate binding domain at 1.30 Angstroms resolution
To Be Published
8QH1
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BU of 8qh1 by Molmil
Crystal structure of the SARS-CoV-2 RBD from the Omicron BA4 variant with the antibody Cv2.3194
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Cv2.3194 heavy chain, IGK@ protein, ...
Authors:Fernandez, I, Rey, F.A.
Deposit date:2023-09-06
Release date:2024-06-19
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Pan-neutralizing antibody isolated from a COVID patient
To Be Published
6NRP
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BU of 6nrp by Molmil
Putative short-chain dehydrogenase/reductase (SDR) from Acinetobacter baumannii
Descriptor: 3-oxoacyl-ACP reductase FabG
Authors:Cross, E.M, Smith, K.M, Shaw, K.I, Aragao, D, Forwood, J.K.
Deposit date:2019-01-23
Release date:2019-02-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Insights into Acinetobacter baumannii fatty acid synthesis 3-oxoacyl-ACP reductases.
Sci Rep, 11, 2021
5E97
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BU of 5e97 by Molmil
Glycoside Hydrolase ligand structure 1
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-beta-D-glucopyranuronic acid-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-beta-D-glucopyranuronic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ...
Authors:Wu, L, Davies, G.J.
Deposit date:2015-10-14
Release date:2015-11-18
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Structural characterization of human heparanase reveals insights into substrate recognition.
Nat.Struct.Mol.Biol., 22, 2015
7ZRP
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BU of 7zrp by Molmil
2.65 Angstrom crystal structure of Ca/CaM:CaMKIIdelta peptide complex
Descriptor: CALCIUM ION, Calcium/calmodulin-dependent protein kinase type II subunit delta, Calmodulin-1, ...
Authors:Helassa, N, Antonyuk, S.
Deposit date:2022-05-04
Release date:2022-12-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Calmodulin variant E140G associated with long QT syndrome impairs CaMKII delta autophosphorylation and L-type calcium channel inactivation.
J.Biol.Chem., 299, 2022
5E9I
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BU of 5e9i by Molmil
Crystal Structure of BAZ2B bromodomain in complex with fragment F60
Descriptor: 1H-indol-6-ol, Bromodomain adjacent to zinc finger domain protein 2B
Authors:Lolli, G, Caflisch, A.
Deposit date:2015-10-15
Release date:2016-03-16
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:High-Throughput Fragment Docking into the BAZ2B Bromodomain: Efficient in Silico Screening for X-Ray Crystallography.
Acs Chem.Biol., 11, 2016
6O0W
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BU of 6o0w by Molmil
Crystal structure of the TIR domain from the grapevine disease resistance protein RUN1 in complex with NADP+ and Bis-Tris
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ADENOSINE-2'-5'-DIPHOSPHATE, TIR-NB-LRR type resistance protein RUN1
Authors:Horsefield, S, Burdett, H, Zhang, X, Manik, M.K, Shi, Y, Chen, J, Tiancong, Q, Gilley, J, Lai, J, Gu, W, Rank, M, Casey, L, Ericsson, D.J, Foley, G, Hughes, R.O, Bosanac, T, von Itzstein, M, Rathjen, J.P, Nanson, J.D, Boden, M, Dry, I.B, Williams, S.J, Staskawicz, B.J, Coleman, M.P, Ve, T, Dodds, P.N, Kobe, B.
Deposit date:2019-02-17
Release date:2019-09-04
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:NAD+cleavage activity by animal and plant TIR domains in cell death pathways.
Science, 365, 2019
8QOQ
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BU of 8qoq by Molmil
Capra hircus reactive intermediate deaminase A mutant - R107A
Descriptor: 2-iminobutanoate/2-iminopropanoate deaminase
Authors:Rizzi, G, Visentin, C, Ricagno, S.
Deposit date:2023-09-29
Release date:2024-06-26
Method:X-RAY DIFFRACTION (1.214 Å)
Cite:Capra hircus reactive intermediate deaminase A mutant - R107A
To Be Published
7Q4T
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BU of 7q4t by Molmil
Structure of the Pseudomonas aeruginosa bacteriophage JG004 endolysin Pae87 bound to a peptidoglycan fragment.
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-alpha-muramic acid, ALA-DGL, ...
Authors:Seoane-Blanco, M, van Raaij, M.J.
Deposit date:2021-11-02
Release date:2022-02-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:Monomodular Pseudomonas aeruginosa phage JG004 lysozyme (Pae87) contains a bacterial surface-active antimicrobial peptide-like region and a possible substrate-binding subdomain.
Acta Crystallogr D Struct Biol, 78, 2022
6NSI
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BU of 6nsi by Molmil
Crystal structure of Fe(III)-bound YtgA from Chlamydia trachomatis
Descriptor: CALCIUM ION, FE (III) ION, Manganese-binding protein, ...
Authors:Luo, Z, Campbell, R, Begg, S.L, Kobe, B, McDevitt, C.A.
Deposit date:2019-01-24
Release date:2019-10-30
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.00006342 Å)
Cite:Structure and Metal Binding Properties of Chlamydia trachomatis YtgA.
J.Bacteriol., 202, 2019
7ZRQ
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BU of 7zrq by Molmil
1.68 Angstrom crystal structure of Ca/CaM-E140G:CaMKIIdelta peptide complex
Descriptor: CALCIUM ION, Calcium/calmodulin-dependent protein kinase type II subunit delta, Calmodulin-1, ...
Authors:Helassa, N, Antonyuk, S.
Deposit date:2022-05-04
Release date:2022-12-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Calmodulin variant E140G associated with long QT syndrome impairs CaMKII delta autophosphorylation and L-type calcium channel inactivation.
J.Biol.Chem., 299, 2022
7QGA
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BU of 7qga by Molmil
Human CD73 (ecto 5'-nucleotidase) in complex with MRS4598 (a 3-methyl-CMPCP derivative, compound 16 in paper) in the open state
Descriptor: 5'-nucleotidase, CALCIUM ION, TETRAETHYLENE GLYCOL, ...
Authors:Strater, N.
Deposit date:2021-12-07
Release date:2022-02-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure-Activity Relationship of 3-Methylcytidine-5'-alpha , beta-methylenediphosphates as CD73 Inhibitors.
J.Med.Chem., 65, 2022
7U6L
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BU of 7u6l by Molmil
Pseudooxynicotine amine oxidase
Descriptor: Amine oxidase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Choudhary, V, Stull, F, Wu, K.
Deposit date:2022-03-04
Release date:2022-07-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The enzyme pseudooxynicotine amine oxidase from Pseudomonas putida S16 is not an oxidase, but a dehydrogenase.
J.Biol.Chem., 298, 2022
8SI0
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BU of 8si0 by Molmil
Structure of binary complex of human cGAS and bound cGAMP
Descriptor: Cyclic GMP-AMP synthase, ZINC ION, cGAMP
Authors:Wu, S, Sohn, J.
Deposit date:2023-04-14
Release date:2024-04-24
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The structural basis for 2'-5'/3'-5'-cGAMP synthesis by cGAS.
Nat Commun, 15, 2024
7MWL
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BU of 7mwl by Molmil
The TAM domain of BAZ2A in complex with a 12mer mCG DNA
Descriptor: Bromodomain adjacent to zinc finger domain protein 2A, DNA (5'-D(*GP*CP*CP*AP*AP*(5CM)P*GP*TP*TP*GP*GP*C)-3'), GLYCEROL
Authors:Liu, K, Dong, A, Li, Y, Loppnau, P, Edwards, A.M, Arrowsmith, C.H, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2021-05-17
Release date:2021-07-21
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:The TAM domain of BAZ2A in complex with a 12mer mCG DNA
To Be Published
8PZ6
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BU of 8pz6 by Molmil
crystal structure of VDR in complex with D-Bishomo-1a,25-dihydroxyvitamin D3 analog 56
Descriptor: (1~{R},3~{R})-5-[(2~{E})-2-[(4~{a}~{R},5~{S},9~{a}~{S})-4~{a}-methyl-5-[(2~{R})-6-methyl-6-oxidanyl-heptan-2-yl]-3,4,5,6,7,8,9,9~{a}-octahydro-2~{H}-benzo[7]annulen-1-ylidene]ethylidene]-2-(3-oxidanylpropylidene)cyclohexane-1,3-diol, Nuclear receptor coactivator 2, Vitamin D3 receptor A
Authors:Rochel, N.
Deposit date:2023-07-27
Release date:2024-04-24
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Design, synthesis, and biological activity of D-bishomo-1 alpha ,25-dihydroxyvitamin D 3 analogs and their crystal structures with the vitamin D nuclear receptor.
Eur.J.Med.Chem., 271, 2024
8SHY
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BU of 8shy by Molmil
Structure of binary complex of mouse cGAS QN and bound ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cyclic GMP-AMP synthase, ZINC ION
Authors:Wu, S, Sohn, J.
Deposit date:2023-04-14
Release date:2024-04-24
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:The structural basis for 2'-5'/3'-5'-cGAMP synthesis by cGAS.
Nat Commun, 15, 2024

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