PDB: 20505 resultsInfo pagesStatus searchChemie searchBIRD

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7WQU	FeoC from Klebsiella pneumoniae Descriptor: Ferrous iron transport protein B, Probable [Fe-S]-dependent transcriptional repressor Authors: Hsueh, K.L, Yu, L.K, Hsieh, Y.C, Hsiao, Y.Y, Chen, C.J. Deposit date: 2022-01-26 Release date: 2023-02-01 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (4.202 Å) Cite: FeoC from Klebsiella pneumoniae uses its iron sulfur cluster to regulate the GTPase activity of the ferrous iron channel. Biochim Biophys Acta Proteins Proteom, 1871, 2023
3R69	Molecular analysis of the interaction of the HDL-receptor SR-BI with the PDZ3 domain of its adaptor protein PDZK1 Descriptor: CITRIC ACID, Na(+)/H(+) exchange regulatory cofactor NHE-RF3, Scavenger receptor class B member 1 Authors: Kocher, O, Birrane, G, Krieger, M. Deposit date: 2011-03-21 Release date: 2011-05-18 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.499 Å) Cite: Identification of the PDZ3 Domain of the Adaptor Protein PDZK1 as a Second, Physiologically Functional Binding Site for the C Terminus of the High Density Lipoprotein Receptor Scavenger Receptor Class B Type I. J.Biol.Chem., 286, 2011
3RFT	Crystal structure of uronate dehydrogenase from Agrobacterium tumefaciens Descriptor: SULFATE ION, Uronate dehydrogenase Authors: Parkkinen, T, Rouvinen, J. Deposit date: 2011-04-07 Release date: 2011-06-15 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal Structure of Uronate Dehydrogenase from Agrobacterium tumefaciens. J.Biol.Chem., 286, 2011
3RS7	H-Ras soaked in 50% isopropanol: 1 of 10 in MSCS set Descriptor: CALCIUM ION, GTPase HRas, MAGNESIUM ION, ... Authors: Mattos, C, Buhrman, G, Kearney, B. Deposit date: 2011-05-02 Release date: 2011-09-21 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Analysis of Binding Site Hot Spots on the Surface of Ras GTPase. J.Mol.Biol., 413, 2011
3RPK	Structure of the Full-Length Major Pilin RrgB from Streptococcus pneumoniae Descriptor: Backbone pilus subunit Authors: Paterson, N.G, Baker, E.N. Deposit date: 2011-04-26 Release date: 2011-06-15 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structure of the Full-Length Major Pilin from Streptococcus pneumoniae: Implications for Isopeptide Bond Formation in Gram-Positive Bacterial Pili Plos One, 6, 2011
3R37	Crystal structure of Arthrobacter sp. strain SU 4-hydroxybenzoyl CoA thioesterase mutant E73Q complexed with 4-hydroxyphenacyl CoA Descriptor: 4-HYDROXYPHENACYL COENZYME A, 4-hydroxybenzoyl-CoA thioesterase Authors: Holden, H.M, Thoden, J.B, Song, F, Zhuang, Z, Trujillo, M, Dunaway-Mariano, D. Deposit date: 2011-03-15 Release date: 2012-03-28 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.8 Å) Cite: The Catalytic Mechanism of the Hotdog-fold Enzyme Superfamily 4-Hydroxybenzoyl-CoA Thioesterase from Arthrobacter sp. Strain SU. Biochemistry, 51, 2012
3R8J	Crystal structure of human SOUL protein (orthorhombic form) Descriptor: Heme-binding protein 2, PHOSPHATE ION Authors: Ambrosi, E.K, Capaldi, S, Bovi, M, Saccomani, G, Perduca, M, Monaco, H.L. Deposit date: 2011-03-24 Release date: 2011-06-29 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structural changes in the BH3 domain of SOUL protein upon interaction with the anti-apoptotic protein Bcl-xL. Biochem.J., 438, 2011
3RES	Crystal structure of E coli Hfq in complex with ADP Descriptor: ADENOSINE-5'-DIPHOSPHATE, Protein hfq Authors: Wang, W.W, Wu, J.H, Shi, Y.Y. Deposit date: 2011-04-05 Release date: 2011-10-19 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2 Å) Cite: Cooperation of Escherichia coli Hfq hexamers in DsrA binding. Genes Dev., 25, 2011
3SWB	Crystal structure of the amino-terminal domain of human cardiac troponin C in complex with cadmium at 1.7 A resolution Descriptor: ACETATE ION, CADMIUM ION, CALCIUM ION, ... Authors: Zhang, X.L, Paetzel, M. Deposit date: 2011-07-13 Release date: 2012-07-18 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.67 Å) Cite: The structure of cardiac troponin C regulatory domain with bound Cd(2+) reveals a closed conformation and unique ion coordination. Acta Crystallogr.,Sect.D, 69, 2013
3T5O	Crystal Structure of human Complement Component C6 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CADMIUM ION, Complement component C6, ... Authors: Aleshin, A.E, Stec, B, Bankston, L.A, DiScipio, R.G, Liddington, R.C. Deposit date: 2011-07-27 Release date: 2012-02-01 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (2.869 Å) Cite: Structure of Complement C6 Suggests a Mechanism for Initiation and Unidirectional, Sequential Assembly of Membrane Attack Complex (MAC). J.Biol.Chem., 287, 2012
3SR0	Crystal Structure of the Phosphoryl Transfer Transition State Mimic in the Adenylate Kinase: ADP/AlF4/AMP in the active site Descriptor: ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, Adenylate kinase, ... Authors: Cho, Y.-J, Kern, D. Deposit date: 2011-07-06 Release date: 2012-10-10 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.565 Å) Cite: The energy landscape of adenylate kinase during catalysis. Nat.Struct.Mol.Biol., 22, 2015
3U2K	S. aureus GyrB ATPase domain in complex with a small molecule inhibitor Descriptor: 2-chloro-6-(4-{[(3,4-dichloro-5-methyl-1H-pyrrol-2-yl)carbonyl]amino}piperidin-1-yl)pyridine-4-carboxamide, DNA gyrase subunit B, MAGNESIUM ION Authors: Boriack-Sjodin, P.A, Prince, D.B, Eakin, A.E, Sherer, B.A. Deposit date: 2011-10-03 Release date: 2012-01-11 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.64 Å) Cite: Pyrrolamide DNA gyrase inhibitors: fragment-based nuclear magnetic resonance screening to identify antibacterial agents. Antimicrob.Agents Chemother., 56, 2012
3TRZ	Mouse Lin28A in complex with let-7d microRNA pre-element Descriptor: Protein lin-28 homolog A, RNA (5'-R(*GP*GP*GP*CP*AP*GP*GP*GP*AP*UP*UP*UP*UP*GP*CP*CP*CP*GP*GP*AP*G)-3'), ZINC ION Authors: Nam, Y, Sliz, P. Deposit date: 2011-09-11 Release date: 2011-11-16 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Molecular Basis for Interaction of let-7 MicroRNAs with Lin28. Cell(Cambridge,Mass.), 147, 2011
3TSV	crystal structure of the third PDZ domain of the human ZO-1 MAGUK protein Descriptor: Tight junction protein ZO-1 Authors: Nomme, J, Lavie, A. Deposit date: 2011-09-13 Release date: 2011-10-12 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.989 Å) Cite: The Src Homology 3 Domain Is Required for Junctional Adhesion Molecule Binding to the Third PDZ Domain of the Scaffolding Protein ZO-1. J.Biol.Chem., 286, 2011
3TYQ	SAR development and discovery of potent indole-based inhibitors of the hepatitis c virus NS5B polymerase Descriptor: 5-ethyl-1-(2-fluoro-5-nitrobenzyl)-3-(2-oxo-1,2-dihydropyridin-3-yl)-1H-indole-2-carboxylic acid, PHOSPHATE ION, RNA-directed RNA polymerase Authors: Lesburg, C.A, Chen, K.X. Deposit date: 2011-09-26 Release date: 2012-02-01 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.6 Å) Cite: A Novel Class of Highly Potent Irreversible Hepatitis C Virus NS5B Polymerase Inhibitors. J.Med.Chem., 55, 2012
3TEA	Crystal structure of Arthrobacter sp. strain su 4-hydroxybenzoyl CoA thioesterase double mutant Q58E/E73A complexed with 4-hydroxyphenacyl CoA Descriptor: 4-HYDROXYPHENACYL COENZYME A, 4-hydroxybenzoyl-CoA thioesterase Authors: Holden, H.M, Thoden, J.B, Song, F, Zhuang, Z, Trujillo, M, Dunaway-Mariano, D. Deposit date: 2011-08-12 Release date: 2012-08-15 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.8 Å) Cite: The Catalytic Mechanism of the Hotdog-fold Enzyme Superfamily 4-Hydroxybenzoyl-CoA Thioesterase from Arthrobacter sp. Strain SU. Biochemistry, 51, 2012
3TGP	Room temperature H-ras Descriptor: GTPase HRas, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER Authors: Fraser, J.S, Alber, T. Deposit date: 2011-08-17 Release date: 2011-10-12 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.3075 Å) Cite: Accessing protein conformational ensembles using room-temperature X-ray crystallography. Proc.Natl.Acad.Sci.USA, 108, 2011
3TGN	Crystal Structure of the zinc-dependent MarR Family Transcriptional Regulator AdcR in the Zn(II)-bound State Descriptor: Adc operon repressor AdcR, ZINC ION Authors: Guerra, A.J, Dann III, C.E, Giedroc, D.P. Deposit date: 2011-08-17 Release date: 2011-11-30 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal Structure of the Zinc-Dependent MarR Family Transcriptional Regulator AdcR in the Zn(II)-Bound State. J.Am.Chem.Soc., 133, 2011
7ZEV	Free form of extended Cyp33-RRM Descriptor: Peptidyl-prolyl cis-trans isomerase E Authors: Blatter, M, Allain, F, Meylan, C. Deposit date: 2022-03-31 Release date: 2022-04-13 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: RNA binding induces an allosteric switch in Cyp33 to repress MLL1-mediated transcription. Sci Adv, 9, 2023
3TP0	Structural activation of the transcriptional repressor EthR from M. tuberculosis by single amino-acid change mimicking natural and synthetic ligands Descriptor: 3-oxo-3-{4-[3-(thiophen-2-yl)-1,2,4-oxadiazol-5-yl]piperidin-1-yl}propanenitrile, HTH-type transcriptional regulator EthR Authors: Carette, X, Blondiaux, N, Willery, E, Hoos, S, Lecat-Guillet, N, Lens, Z, Wohlkonig, A, Wintjens, R, Soror, S, Fr nois, F, Diri, B, Villeret, V, England, P, Lippens, G, Deprez, B, Locht, C, Willand, N, Baulard, A. Deposit date: 2011-09-07 Release date: 2011-12-21 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural activation of the transcriptional repressor EthR from Mycobacterium tuberculosis by single amino acid change mimicking natural and synthetic ligands. Nucleic Acids Res., 40, 2011
7ZEW	Complex Cyp33-RRM : AAUAAA RNA Descriptor: Peptidyl-prolyl cis-trans isomerase E, RNA (5'-R(*AP*AP*UP*AP*AP*A)-3') Authors: Blatter, M, Allain, F, Meylan, C. Deposit date: 2022-03-31 Release date: 2022-04-13 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: RNA binding induces an allosteric switch in Cyp33 to repress MLL1-mediated transcription. Sci Adv, 9, 2023
7ZEZ	Trimolecular complex Cyp33-RRMdelta alpha : MLL1-PHD3 : H3K4me3 Descriptor: Histone H3, Isoform 3 of Peptidyl-prolyl cis-trans isomerase E, MLL cleavage product N320, ... Authors: Blatter, M, Allain, F, Meylan, C. Deposit date: 2022-03-31 Release date: 2022-04-13 Last modified: 2023-05-03 Method: SOLUTION NMR Cite: RNA binding induces an allosteric switch in Cyp33 to repress MLL1-mediated transcription. Sci Adv, 9, 2023
7ZEX	Complex Cyp33-RRMdelta alpha : UAAUGUCG RNA Descriptor: Isoform 3 of Peptidyl-prolyl cis-trans isomerase E, RNA (5'-R(*UP*AP*AP*UP*GP*UP*CP*G)-3') Authors: Blatter, M, Allain, F, Meylan, C. Deposit date: 2022-03-31 Release date: 2022-05-04 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: RNA binding induces an allosteric switch in Cyp33 to repress MLL1-mediated transcription. Sci Adv, 9, 2023
3TS2	Mouse Lin28A in complex with let-7g microRNA pre-element Descriptor: Protein lin-28 homolog A, RNA (5'-R(*GP*GP*GP*GP*UP*CP*UP*AP*UP*GP*AP*UP*AP*CP*CP*AP*CP*CP*CP*CP*GP*GP*AP*G)-3'), ZINC ION Authors: Nam, Y, Sliz, P. Deposit date: 2011-09-11 Release date: 2011-11-16 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.01 Å) Cite: Molecular Basis for Interaction of let-7 MicroRNAs with Lin28. Cell(Cambridge,Mass.), 147, 2011
7YYK	Crystal structure of the O-fucosylated form of TSRs1-3 from the human thrombospondin 1 Descriptor: 1,2-ETHANEDIOL, Thrombospondin-1, alpha-L-fucopyranose Authors: Berardinelli, S.J, Eletsky, A, Valero-Gonzalez, J, Ito, A, Manjunath, R, Hurtado-Guerrero, R, Prestegard, J.R, Woods, R.J, Haltiwanger, R.S. Deposit date: 2022-02-18 Release date: 2022-05-25 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.6 Å) Cite: O-fucosylation stabilizes the TSR3 motif in thrombospondin-1 by interacting with nearby amino acids and protecting a disulfide bond. J.Biol.Chem., 298, 2022

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