PDB: 45953 resultsInfo pagesStatus searchChemie searchBIRD

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3LJ5	Full Length Bacteriophage P22 Portal Protein Descriptor: Portal protein Authors: Olia, A.S, Cingolani, G. Deposit date: 2010-01-25 Release date: 2011-04-20 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (7.497 Å) Cite: Three-dimensional structure of a viral genome-delivery portal vertex. Nat.Struct.Mol.Biol., 18, 2011
7BFS	deoxyxylose nucleic acid hairpin Descriptor: DNA (5'-D(*AP*GP*CP*AP*AP*TP*CP*CP*(XC)P*(XC)P*(XC)P*(XC)P*GP*GP*AP*TP*TP*GP*CP*T)-3') Authors: Mattelaer, C.-A, Mohitosh, M, Smets, L, Maiti, M, Schepers, G, Mattelaer, H.-P, Rosemeyer, H, Herdewijn, P, Lescrinier, E. Deposit date: 2021-01-04 Release date: 2021-01-27 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Stable Hairpin Structures Formed by Xylose-Based Nucleic Acids. Chembiochem, 22, 2021
6TC8	2'-F-arabinoguanosine and 2'-F-riboguanosine modified hybrid type G-quadruplex with V-loop Descriptor: DNA (5'-D(*GP*GP*GP*AP*TP*GP*GP*GP*AP*CP*AP*CP*AP*(GFL)P*(GF2)P*GP*GP*AP*CP*GP*GP*G)-3') Authors: Haase, L, Weisz, K. Deposit date: 2019-11-05 Release date: 2020-03-25 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Switching the type of V-loop in sugar-modified G-quadruplexes through altered fluorine interactions. Chem.Commun.(Camb.), 56, 2020
6TCG	2'-F-riboguanosine and 2'-F-arabinoguanosine modified G-quadruplex with V-loop and all-syn G-tract Descriptor: DNA (5'-D(*GP*GP*GP*AP*TP*GP*GP*GP*AP*CP*AP*CP*AP*(GF2)P*(GFL)P*GP*GP*AP*CP*GP*GP*G)-3') Authors: Haase, L, Weisz, K. Deposit date: 2019-11-06 Release date: 2020-03-25 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Switching the type of V-loop in sugar-modified G-quadruplexes through altered fluorine interactions. Chem.Commun.(Camb.), 56, 2020
6ZTE	Structure of a parallel c-myc modified with 5' duplex stem-loop and 3' diagonal snap-back loop Descriptor: DNA (36-MER) Authors: Vianney, Y.M, Weisz, K. Deposit date: 2020-07-20 Release date: 2020-10-07 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Quadruplex-Duplex Junction: A High-Affinity Binding Site for Indoloquinoline Ligands. Chemistry, 26, 2020
3PD7	Crystal Structure of the Sixth BRCT Domain of Human TopBP1 Descriptor: DNA topoisomerase 2-binding protein 1 Authors: Lee, J, Xu, C, Cui, G, Thompson, J.R, Mer, G. Deposit date: 2010-10-22 Release date: 2010-12-08 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.26 Å) Cite: Crystal Structure of the Sixth BRCT Domain of Human TopBP1 To be Published
2M4P	Solution structure of an intramolecular propeller-type G-quadruplex containing a single bulge Descriptor: DNA (5'-D(*TP*TP*GP*TP*GP*GP*TP*GP*GP*GP*TP*GP*GP*GP*TP*GP*GP*GP*T)-3') Authors: Mukundan, V.T, Phan, A.T. Deposit date: 2013-02-08 Release date: 2013-06-19 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Bulges in G-Quadruplexes: Broadening the Definition of G-Quadruplex-Forming Sequences. J.Am.Chem.Soc., 135, 2013
8RZX	Solution structure of a parallel stranded G-quadruplex formed in ORAI1 promoter Descriptor: DNA (5'-D(*TP*GP*GP*GP*CP*GP*GP*GP*GP*CP*AP*CP*AP*GP*GP*TP*GP*GP*GP*CP*GP*GP*GP*G)-3') Authors: Jana, J, Weisz, K. Deposit date: 2024-02-13 Release date: 2024-08-21 Method: SOLUTION NMR Cite: Remodeling Ca2+ dynamics by targeting a promising E-box containing G-quadruplex at ORAI1 promoter in triple-negative breast cancer Cell Calcium, 2024
7TXJ	Cryo-EM of AFV6 Descriptor: DNA (5'-D(*TP*AP*TP*AP*TP*AP*TP*AP*TP*AP*TP*A)-3'), MCP1, MCP2 Authors: Wang, F, Cvirkaite-Krupovic, V, Krupovic, M, Egelman, E.H. Deposit date: 2022-02-09 Release date: 2022-06-01 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Cryo-EM of AFV6 To Be Published
6EBB	Crystal Structure of YycF homologue, crystals grown in Tris buffer Descriptor: DNA-binding response regulator Authors: Riboldi-Tunnicliffe, A, Panjikar, S, Williamson, R.M, Gabrielsen, M. Deposit date: 2018-08-06 Release date: 2019-08-14 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.022 Å) Cite: Crystal Structure of YycF homologue, crystals grown in Tris buffer To Be Published
4HQH	Decamer Fluoro Carbocyclic LNA (R-F-cLNA) crystal structure Descriptor: DNA (5'-D(*GP*CP*GP*TP*AP*(ULF)P*AP*CP*GP*C)-3') Authors: Seth, P.P, Pallan, P.S, Swayze, E.E, Egli, M. Deposit date: 2012-10-25 Release date: 2013-11-20 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Properties of a Fluorinated Carbocyclic LNA Analog To be Published
2LBY	G-quadruplex structure formed at the 5'-end of NHEIII_1 element in human c-MYC promoter Descriptor: DNA (5'-D(*TP*AP*GP*GP*GP*AP*GP*GP*GP*TP*AP*GP*GP*GP*AP*GP*GP*GP*T)-3') Authors: Mathad, R, Hatzakis, E, Yang, D. Deposit date: 2011-04-07 Release date: 2012-02-22 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: c-MYC promoter G-quadruplex formed at the 5'-end of NHE III1 element: insights into biological relevance and parallel-stranded G-quadruplex stability. Nucleic Acids Res., 39, 2011
2LPW	human CEB25 minisatellite G-quadruplex Descriptor: DNA (26-MER) Authors: Amrane, S, Adrian, M, Heddi, B, Serero, A, Nicolas, A, Mergny, J.L, Phan, A.T. Deposit date: 2012-02-20 Release date: 2012-03-07 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Formation of Pearl-Necklace Monomorphic G-Quadruplexes in the Human CEB25 Minisatellite. J.Am.Chem.Soc., 134, 2012
1WRJ	Crystal structure of O6-methylguanine methyltransferase from Sulfolobus tokodaii Descriptor: Methylated-DNA--protein-cysteine methyltransferase Authors: Kuroda, M, Tsunoda, M, Nakamura, K.T. Deposit date: 2004-10-18 Release date: 2005-12-06 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of O6-methylguanine methyltransferase from Sulfolobus tokodaii To be Published
5EV3	Structure III of Intact U2AF65 Recognizing the 3' Splice Site Signal Descriptor: DNA/RNA (5'-R(P*UP*U)-D(P*U)-R(P*UP*U)-D(P*(BRU)P*UP*U)-3'), Splicing factor U2AF 65 kDa subunit Authors: Agrawal, A.A, Jenkins, J.L, Kielkopf, C.L. Deposit date: 2015-11-19 Release date: 2016-02-24 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.5 Å) Cite: An extended U2AF(65)-RNA-binding domain recognizes the 3' splice site signal. Nat Commun, 7, 2016
5EV4	Structure IV of Intact U2AF65 Recognizing the 3' Splice Site Signal Descriptor: DNA/RNA (5'-R(P*UP*UP*UP*(UD)P*UP*U)-D(P*(BRU)P*(UD))-R(P*C)-3'), GLYCEROL, Splicing factor U2AF 65 kDa subunit Authors: Agrawal, A.A, Jenkins, J.L, Kielkopf, C.L. Deposit date: 2015-11-19 Release date: 2016-02-24 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.57 Å) Cite: An extended U2AF(65)-RNA-binding domain recognizes the 3' splice site signal. Nat Commun, 7, 2016
6GH0	Two-quartet kit* G-quadruplex is formed via double-stranded pre-folded structure Descriptor: DNA (5'-D(*GP*GP*CP*GP*AP*GP*GP*AP*GP*GP*GP*GP*CP*GP*TP*GP*GP*CP*CP*GP*GP*C)-3') Authors: Kotar, A, Rigo, R, Sissi, C, Plavec, J. Deposit date: 2018-05-04 Release date: 2019-01-09 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Two-quartet kit* G-quadruplex is formed via double-stranded pre-folded structure. Nucleic Acids Res., 47, 2019
4Z97	Crystal structure of USP7 in complex with DNMT1(K1115Q) Descriptor: DNA (cytosine-5)-methyltransferase 1, GLYCEROL, Ubiquitin carboxyl-terminal hydrolase 7 Authors: Zhang, Z.M, Song, J. Deposit date: 2015-04-09 Release date: 2016-10-12 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.998 Å) Cite: Crystal structure of USP7 in complex with DNMT1(K1115Q) To Be Published
4Z96	Crystal structure of DNMT1 in complex with USP7 Descriptor: DNA (cytosine-5)-methyltransferase 1, Ubiquitin carboxyl-terminal hydrolase 7 Authors: Zhang, Z.M, Song, J. Deposit date: 2015-04-09 Release date: 2016-10-12 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Crystal structure of DNMT1 in complex with USP7 To Be Published
5WLZ	Crystal Structure of Amino Acids 1677-1758 of Human Beta Cardiac Myosin Fused to Xrcc4 Descriptor: DNA repair protein XRCC4,Myosin-7 Authors: Andreas, M.P, Ajay, G, Gellings, J, Rayment, I. Deposit date: 2017-07-28 Release date: 2017-08-23 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Design considerations in coiled-coil fusion constructs for the structural determination of a problematic region of the human cardiac myosin rod. J. Struct. Biol., 200, 2017
246D	STRUCTURE OF THE PURINE-PYRIMIDINE ALTERNATING RNA DOUBLE HELIX, R(GUAUAUA)D(C) , WITH A 3'-TERMINAL DEOXY RESIDUE Descriptor: DNA/RNA (5'-R(*GP*UP*AP*UP*AP*UP*AP*)-D(*C)-3'), SODIUM ION Authors: Wahl, M.C, Ban, C, Sekharudu, C, Ramakrishnan, B, Sundaralingam, M. Deposit date: 1996-01-25 Release date: 1996-08-26 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structure of the purine-pyrimidine alternating RNA double helix, r(GUAUAUA)d(C), with a 3'-terminal deoxy residue. Acta Crystallogr.,Sect.D, 52, 1996
247D	CRYSTAL STRUCTURES OF AN A-FORM DUPLEX WITH SINGLE-ADENOSINE BULGES AND A CONFORMATIONAL BASIS FOR SITE SPECIFIC RNA SELF-CLEAVAGE Descriptor: DNA/RNA (5'-R(*GP*CP*GP*)-D(*AP*TP*AP*TP*AP*)-R(*CP*GP*C)-3') Authors: Portmann, S, Grimm, S, Workman, C, Usman, N, Egli, M. Deposit date: 1996-02-02 Release date: 1996-03-08 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Crystal structures of an A-form duplex with single-adenosine bulges and a conformational basis for site-specific RNA self-cleavage. Chem.Biol., 3, 1996
248D	CRYSTAL STRUCTURES OF AN A-FORM DUPLEX WITH SINGLE-ADENOSINE BULGES AND A CONFORMATIONAL BASIS FOR SITE SPECIFIC RNA SELF-CLEAVAGE Descriptor: DNA/RNA (5'-R(*GP*CP*GP*)-D(*AP*TP*AP*TP*AP*)-R(*CP*GP*C)-3'), ORTHORHOMBIC, SPERMINE Authors: Portmann, S, Grimm, S, Workman, C, Usman, N, Egli, M. Deposit date: 1996-02-02 Release date: 1996-03-08 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.83 Å) Cite: Crystal structures of an A-form duplex with single-adenosine bulges and a conformational basis for site-specific RNA self-cleavage. Chem.Biol., 3, 1996
143D	SOLUTION STRUCTURE OF THE HUMAN TELOMERIC REPEAT D(AG3[T2AG3]3) OF THE G-QUADRUPLEX Descriptor: DNA (5'-D(*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3') Authors: Wang, Y, Patel, D.J. Deposit date: 1993-10-08 Release date: 1994-04-30 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of the human telomeric repeat d[AG3(T2AG3)3] G-tetraplex. Structure, 1, 1993
3NKB	A 1.9A crystal structure of the HDV ribozyme precleavage suggests both Lewis acid and general acid mechanisms contribute to phosphodiester cleavage Descriptor: DNA/RNA (5'-D(*(DUR))-D(*GP*G)-R(P*CP*UP*UP*GP*CP*A)-3'), MAGNESIUM ION, The hepatitis delta virus ribozyme Authors: Chen, J.-H, Yajima, R, Chadalavada, D.M, Chase, E, Bevilacqua, P.C, Golden, B.L. Deposit date: 2010-06-18 Release date: 2010-09-01 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.916 Å) Cite: A 1.9 A crystal structure of the HDV ribozyme precleavage suggests both Lewis acid and general acid mechanisms contribute to phosphodiester cleavage. Biochemistry, 49, 2010

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