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1HKN
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A complex between acidic fibroblast growth factor and 5-amino-2-naphthalenesulfonate
Descriptor: 5-AMINO-NAPHTALENE-2-MONOSULFONATE, HEPARIN-BINDING GROWTH FACTOR 1
Authors:Fernandez-Tornero, C, Lozano, R.M, Gimenez-Gallego, G, Romero, A.
Deposit date:2003-03-10
Release date:2004-03-11
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Leads for Development of New Naphthalenesulfonate Derivatives with Enhanced Antiangiogenic Activity: Crystal Structure of Acidic Fibroblast Growth Factor in Complex with 5-Amino-2-Naphthalenesulfonate
J.Biol.Chem., 278, 2003
9ED9
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BU of 9ed9 by Molmil
SpCas9 with 17-bp R-loop containing 2 terminal mismatches (State III - checkpoint)
Descriptor: CRISPR-associated endonuclease Cas9/Csn1, Non-target strand, PAM-distal Target Strand, ...
Authors:Kiernan, K.A, Taylor, D.W.
Deposit date:2024-11-16
Release date:2025-06-18
Last modified:2025-07-09
Method:ELECTRON MICROSCOPY (2.95 Å)
Cite:Visualization of a multi-turnover Cas9 after product release.
Nat Commun, 16, 2025
9EDB
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BU of 9edb by Molmil
SpCas9 with 17-bp R-loop containing 2 terminal mismatches (State V - dissociated)
Descriptor: CRISPR-associated endonuclease Cas9/Csn1, Non-target Strand, Target Strand, ...
Authors:Kiernan, K.A, Taylor, D.W.
Deposit date:2024-11-16
Release date:2025-06-18
Last modified:2025-07-09
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Visualization of a multi-turnover Cas9 after product release.
Nat Commun, 16, 2025
9EAK
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BU of 9eak by Molmil
SpCas9 with 17-bp R-loop containing 2 terminal mismatches (State I - pre-activation)
Descriptor: CRISPR-associated endonuclease Cas9/Csn1, DNA (Non-target strand), DNA (Target Strand), ...
Authors:Kiernan, K.A, Taylor, D.W.
Deposit date:2024-11-11
Release date:2025-06-18
Last modified:2025-07-09
Method:ELECTRON MICROSCOPY (2.76 Å)
Cite:Visualization of a multi-turnover Cas9 after product release.
Nat Commun, 16, 2025
8VSM
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BU of 8vsm by Molmil
Ternary structure of 14-3-3 sigma, ARAF phosphopeptide (pS214) and compound 78 (1124378)
Descriptor: 1-[8-(4-bromophenyl)sulfonyl-5-oxa-2,8-diazaspiro[3.5]nonan-2-yl]-2-chloranyl-ethanone, 14-3-3 protein sigma, CHLORIDE ION, ...
Authors:Vickery, H.R, Virta, J.M, Pennings, M, Konstantinidou, M, van den Oetelaar, M, Neitz, R.J, Ottmann, C, Brunsveld, L, Arkin, M.R.
Deposit date:2024-01-24
Release date:2025-03-19
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Ternary structure of 14-3-3 sigma, ARAF phosphopeptide (pS214) and compound 78 (1124378)
To Be Published
8VSN
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Ternary structure of 14-3-3 sigma, ARAF phosphopeptide (pS214) and compound 79 (1124379)
Descriptor: 14-3-3 protein sigma, 2-chloranyl-1-[8-(4-iodophenyl)sulfonyl-5-oxa-2,8-diazaspiro[3.5]nonan-2-yl]ethanone, CHLORIDE ION, ...
Authors:Vickery, H.R, Virta, J.M, Pennings, M, Konstantinidou, M, van den Oetelaar, M, Neitz, R.J, Ottmann, C, Brunsveld, L, Arkin, M.R.
Deposit date:2024-01-24
Release date:2025-03-19
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Ternary structure of 14-3-3 sigma, ARAF phosphopeptide (pS214) and compound 79 (1124379)
To Be Published
8VSO
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BU of 8vso by Molmil
Ternary structure of 14-3-3 sigma, BRAF phosphopeptide (pS365) and compound 78 (1124378)
Descriptor: 1-[8-(4-bromophenyl)sulfonyl-5-oxa-2,8-diazaspiro[3.5]nonan-2-yl]-2-chloranyl-ethanone, 14-3-3 protein sigma, CHLORIDE ION, ...
Authors:Vickery, H.R, Virta, J.M, Pennings, M, Konstantinidou, M, van den Oetelaar, M, Neitz, R.J, Ottmann, C, Brunsveld, L, Arkin, M.R.
Deposit date:2024-01-24
Release date:2025-03-19
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Ternary structure of 14-3-3 sigma, BRAF phosphopeptide (pS365) and compound 78 (1124378)
To Be Published
1QFW
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BU of 1qfw by Molmil
TERNARY COMPLEX OF HUMAN CHORIONIC GONADOTROPIN WITH FV ANTI ALPHA SUBUNIT AND FV ANTI BETA SUBUNIT
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ANTIBODY (ANTI ALPHA SUBUNIT) (HEAVY CHAIN), ANTIBODY (ANTI ALPHA SUBUNIT) (LIGHT CHAIN), ...
Authors:Tegoni, M, Spinelli, S, Cambillau, C.
Deposit date:1999-04-15
Release date:2000-04-26
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Crystal structure of a ternary complex between human chorionic gonadotropin (hCG) and two Fv fragments specific for the alpha and beta-subunits.
J.Mol.Biol., 289, 1999
4K0R
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BU of 4k0r by Molmil
Crystal structure of mouse Cryptochrome 1
Descriptor: Cryptochrome-1
Authors:Czarna, A, Wolf, E.
Deposit date:2013-04-04
Release date:2013-06-26
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structures of Drosophila cryptochrome and mouse cryptochrome1 provide insight into circadian function.
Cell(Cambridge,Mass.), 153, 2013
3QLM
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BU of 3qlm by Molmil
Crystal structure of porcine pancreatic phospholipase A2 in complex with n-hexadecanoic acid
Descriptor: CALCIUM ION, PALMITIC ACID, Phospholipase A2, ...
Authors:Aparna, V, Dileep, K.V, Karthe, P, Mandal, P.K, Sadasivan, C, Haridas, M.
Deposit date:2011-02-03
Release date:2011-04-06
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Anti-inflammatory property of n-hexadecanoic acid: Structural evidence and Kinetic assessment.
Chem.Biol.Drug Des., 2012
9VD9
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BU of 9vd9 by Molmil
Cryo-EM structure of the human DSS1-INTAC-PEC complex
Descriptor: 26S proteasome complex subunit SEM1, DNA (45-MER), DNA (48-MER), ...
Authors:Zheng, H, Xu, Y, Cheng, J.
Deposit date:2025-06-07
Release date:2025-06-25
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:The small but versatile DSS1 protein is required for proper Integrator-PP2A function
To Be Published
9BLN
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BU of 9bln by Molmil
The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex
Descriptor: 40S ribosomal protein S14, ACETIC ACID, Eukaryotic initiation factor 4A-I, ...
Authors:Brito Querido, J, Sokabe, M, Diaz-Lopez, I, Gordiyenko, Y, Zuber, P, Yifei, D, Albacete-Albacete, L, Ramakrishnan, V, S Fraser, C.
Deposit date:2024-04-30
Release date:2024-09-04
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Human tumor suppressor protein Pdcd4 binds at the mRNA entry channel in the 40S small ribosomal subunit.
Nat Commun, 15, 2024
9B0J
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BU of 9b0j by Molmil
In situ human unrotated hibernating with CCDC124 state 80S ribosome
Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ...
Authors:Wei, Z, Yong, X.
Deposit date:2024-03-12
Release date:2025-04-30
Method:ELECTRON MICROSCOPY (2.84 Å)
Cite:In situ human unrotated hibernating with CCDC124 state 80S ribosome
To Be Published
9B11
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BU of 9b11 by Molmil
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ...
Authors:Wei, Z, Yong, X.
Deposit date:2024-03-12
Release date:2025-04-30
Method:ELECTRON MICROSCOPY (2.77 Å)
Cite:In situ human unrotated hibernating without CCDC124 state 80S ribosome
To Be Published
9BCT
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BU of 9bct by Molmil
Cryo-EM structure of Thermococcus kodakarensis FttA-dependent transcription pre-termination complex containing 44 nt RNA
Descriptor: DNA-directed RNA polymerase subunit A", DNA-directed RNA polymerase subunit A', DNA-directed RNA polymerase subunit B, ...
Authors:You, L, Ebright, R.H.
Deposit date:2024-04-09
Release date:2024-07-31
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Structural basis of archaeal FttA-dependent transcription termination.
Nature, 635, 2024
9BCU
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BU of 9bcu by Molmil
Cryo-EM structure of Thermococcus kodakarensis FttA-dependent transcription pre-termination complex containing 52 nt RNA
Descriptor: DNA-directed RNA polymerase subunit A", DNA-directed RNA polymerase subunit A', DNA-directed RNA polymerase subunit B, ...
Authors:You, L, Ebright, R.H.
Deposit date:2024-04-09
Release date:2024-07-31
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:Structural basis of archaeal FttA-dependent transcription termination.
Nature, 635, 2024
3SI8
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BU of 3si8 by Molmil
Human DNA polymerase eta - DNA ternary complex with the 5'T of a CPD in the active site (TT2)
Descriptor: (2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol, 1,2-ETHANEDIOL, 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, ...
Authors:Biertumpfel, C, Zhao, Y, Kondo, Y, Ramon-Maiques, S, Gregory, M, Lee, J.Y, Masutani, C, Lehmann, A.R, Hanaoka, F, Yang, W.
Deposit date:2011-06-17
Release date:2011-08-03
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structure and mechanism of human DNA polymerase eta.
Nature, 465, 2010
9BKD
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BU of 9bkd by Molmil
The structure of human Pdcd4 bound to the 40S small ribosomal subunit
Descriptor: 18S rRNA, 40S ribosomal protein S12, 40S ribosomal protein S13, ...
Authors:Brito Querido, J, Sokabe, M, Diaz-Lopez, I, Gordiyenko, Y, Zuber, P, Albacete-Albacete, L, Ramakrishnan, V, S.Fraser, C.
Deposit date:2024-04-27
Release date:2024-09-04
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Human tumor suppressor protein Pdcd4 binds at the mRNA entry channel in the 40S small ribosomal subunit.
Nat Commun, 15, 2024
4V8Q
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BU of 4v8q by Molmil
Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, ...
Authors:Neubauer, C, Gillet, R, Kelley, A.C, Ramakrishnan, V.
Deposit date:2011-12-10
Release date:2014-07-09
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Decoding in the absence of a codon by tmRNA and SmpB in the ribosome.
Science, 335, 2012
5KI6
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BU of 5ki6 by Molmil
Human Argonaute-2 bound to a guide RNA with a nucleobase modification at position 1
Descriptor: PHENOL, Protein argonaute-2, miR-122
Authors:Schirle, N.T, MacRae, I.J.
Deposit date:2016-06-16
Release date:2016-07-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.153 Å)
Cite:Structure-Guided Control of siRNA Off-Target Effects.
J.Am.Chem.Soc., 138, 2016
6T9L
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BU of 6t9l by Molmil
SAGA DUB module bound to a ubiqitinated nucleosome
Descriptor: Histone H2A, Histone H2B, Histone H2B 1.1, ...
Authors:Wang, H, Cramer, P.
Deposit date:2019-10-28
Release date:2020-01-29
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structure of the transcription coactivator SAGA.
Nature, 577, 2020
6O9L
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BU of 6o9l by Molmil
Human holo-PIC in the closed state
Descriptor: CDK-activating kinase assembly factor MAT1, Cyclin-H, Cyclin-dependent kinase 7, ...
Authors:Yan, C.L, Dodd, T, He, Y, Tainer, J.A, Tsutakawa, S.E, Ivanov, I.
Deposit date:2019-03-14
Release date:2019-05-29
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (7.2 Å)
Cite:Transcription preinitiation complex structure and dynamics provide insight into genetic diseases.
Nat.Struct.Mol.Biol., 26, 2019
3K2P
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BU of 3k2p by Molmil
HIV-1 Reverse Transcriptase Isolated RnaseH Domain with the Inhibitor beta-thujaplicinol Bound at the Active Site
Descriptor: 2,7-dihydroxy-4-(propan-2-yl)cyclohepta-2,4,6-trien-1-one, MANGANESE (II) ION, Reverse Transcriptase
Authors:Pauly, T.A, Himmel, D.M, Maegley, K, Arnold, E.
Deposit date:2009-09-30
Release date:2010-02-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Structure of HIV-1 reverse transcriptase with the inhibitor beta-Thujaplicinol bound at the RNase H active site.
Structure, 17, 2009
6EUY
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BU of 6euy by Molmil
Structure of the midlink and cap-binding domains of influenza A polymerase PB2 subunit with a bound azaindazole cap-binding inhibitor
Descriptor: (2~{S},3~{S})-3-[[5-fluoranyl-2-(5-fluoranyl-1~{H}-pyrazolo[3,4-b]pyridin-3-yl)pyrimidin-4-yl]amino]bicyclo[2.2.2]octane-2-carboxylic acid, Polymerase basic protein 2, SULFATE ION
Authors:Cusack, S, Gaudon, S.
Deposit date:2017-10-31
Release date:2017-12-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3 Å)
Cite:Capped RNA primer binding to influenza polymerase and implications for the mechanism of cap-binding inhibitors.
Nucleic Acids Res., 46, 2018
6ZEH
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BU of 6zeh by Molmil
Structure of PP1-spectrin alpha II chimera [PP1(7-304) + linker (G/S)x9 + spectrin alpha II (1025-1039)] bound to Phactr1 (516-580)
Descriptor: MANGANESE (II) ION, PHOSPHATE ION, Phosphatase and actin regulator, ...
Authors:Mouilleron, S, Treisman, R, Fedoryshchak, R, Lee, R, Butler, A.M, Prechova, M.
Deposit date:2020-06-16
Release date:2020-09-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Molecular basis for substrate specificity of the Phactr1/PP1 phosphatase holoenzyme.
Elife, 9, 2020

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