Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4OV5
DownloadVisualize
BU of 4ov5 by Molmil
Structure of HLA-DR1 with a bound peptide with non-optimal alanine in the P1 pocket
Descriptor: HLA class I histocompatibility antigen, A-2 alpha chain, HLA class II histocompatibility antigen, ...
Authors:Trenh, P, Yin, L, Stern, L.J.
Deposit date:2014-02-20
Release date:2014-07-16
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.199 Å)
Cite:Susceptibility to HLA-DM Protein Is Determined by a Dynamic Conformation of Major Histocompatibility Complex Class II Molecule Bound with Peptide.
J.Biol.Chem., 289, 2014
4OC7
DownloadVisualize
BU of 4oc7 by Molmil
Retinoic acid receptor alpha in complex with (E)-3-(3'-allyl-6-hydroxy-[1,1'-biphenyl]-3-yl)acrylic acid and a fragment of the coactivator TIF2
Descriptor: (2E)-3-[6-hydroxy-3'-(prop-2-en-1-yl)biphenyl-3-yl]prop-2-enoic acid, Nuclear receptor coactivator 2, Retinoic acid receptor RXR-alpha
Authors:Leysen, S, Scheepstra, M, Brunsveld, L, Milroy, L.G, Ottmann, C.
Deposit date:2014-01-08
Release date:2014-10-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A natural-product switch for a dynamic protein interface.
Angew.Chem.Int.Ed.Engl., 53, 2014
4OE9
DownloadVisualize
BU of 4oe9 by Molmil
The crystal structure of the n-terminal domain of COMMD9
Descriptor: CITRIC ACID, COMM domain-containing protein 9, POTASSIUM ION
Authors:Hospenthal, M, Celligoi, D, Lott, J.S.
Deposit date:2014-01-12
Release date:2015-03-04
Last modified:2018-08-22
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural insights into the architecture and membrane interactions of the conserved COMMD proteins.
Elife, 7, 2018
4M1P
DownloadVisualize
BU of 4m1p by Molmil
Crystal structure of the copper-sensing repressor CsoR with Cu(I) from Geobacillus thermodenitrificans NG80-2
Descriptor: COPPER (I) ION, Copper-sensitive operon repressor (CsoR), SODIUM ION
Authors:Chang, F, Dann III, C.E, Giedroc, D.P.
Deposit date:2013-08-03
Release date:2014-05-21
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.564 Å)
Cite:Cu(I)-mediated allosteric switching in a copper-sensing operon repressor (CsoR).
J.Biol.Chem., 289, 2014
4M3M
DownloadVisualize
BU of 4m3m by Molmil
Influenza Neuraminidase in complex with a stereomutated analogue of Oseltamivir carboxylate
Descriptor: (3R,4S,5S)-4-(acetylamino)-5-amino-3-(pentan-3-yloxy)cyclohex-1-ene-1-carboxylic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Kerry, P.S.
Deposit date:2013-08-06
Release date:2014-02-12
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Synthesis, structure and inhibitory activity of a stereoisomer of oseltamivir carboxylate.
Org.Biomol.Chem., 12, 2014
4OGW
DownloadVisualize
BU of 4ogw by Molmil
Structure of a human CD38 mutant complexed with NMN
Descriptor: ADP-ribosyl cyclase 1, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE
Authors:Shewchuk, L.M, Preugschat, F, Carter, L.H, Boros, E.E, Moyer, M.B, Stewart, E.L, Porter, D.J.T.
Deposit date:2014-01-16
Release date:2014-10-08
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:A pre-steady state and steady state kinetic analysis of the N-ribosyl hydrolase activity of hCD157.
Arch.Biochem.Biophys., 564C, 2014
4OJQ
DownloadVisualize
BU of 4ojq by Molmil
Crystal Structure of Hepatitis C Virus NS3 Helicase Inhibitor Co-complex with Fragment 1 [(5-bromo-1H-indol-3-yl)acetic acid]
Descriptor: (5-bromo-1H-indol-3-yl)acetic acid, CALCIUM ION, Serine protease NS3
Authors:Padyana, A.K.
Deposit date:2014-01-21
Release date:2014-03-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Integrated strategies for identifying leads that target the NS3 helicase of the hepatitis C virus.
J.Med.Chem., 57, 2014
4OS5
DownloadVisualize
BU of 4os5 by Molmil
Crystal structure of urokinase-type plasminogen activator (uPA) complexed with bicyclic peptide UK603 (bicyclic 2)
Descriptor: SULFATE ION, Urokinase-type plasminogen activator, bicyclic peptide UK603 (bicyclic 2)
Authors:Chen, S, Pojer, F, Heinis, C.
Deposit date:2014-02-12
Release date:2014-09-24
Last modified:2021-06-02
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Dithiol amino acids can structurally shape and enhance the ligand-binding properties of polypeptides.
Nat Chem, 6, 2014
4MWO
DownloadVisualize
BU of 4mwo by Molmil
Crystal structure of human mitochondrial 5'(3')-deoxyribonucleotidase in complex with the inhibitor CPB-T
Descriptor: 1-{3,5-O-[(4-carboxyphenyl)(phosphono)methylidene]-2-deoxy-beta-D-threo-pentofuranosyl}-5-methylpyrimidine-2,4(1H,3H)-dione, 5'(3')-deoxyribonucleotidase, mitochondrial, ...
Authors:Pachl, P, Rezacova, P, Brynda, J.
Deposit date:2013-09-25
Release date:2014-09-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Conformationally constrained nucleoside phosphonic acids - potent inhibitors of human mitochondrial and cytosolic 5'(3')-nucleotidases.
Org.Biomol.Chem., 12, 2014
4MYS
DownloadVisualize
BU of 4mys by Molmil
1.4 Angstrom Crystal Structure of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase with SHCHC and Pyruvate
Descriptor: 2-(3-CARBOXYPROPIONYL)-6-HYDROXY-CYCLOHEXA-2,4-DIENE CARBOXYLIC ACID, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase, GLYCEROL, ...
Authors:Sun, Y, Yin, S, Feng, Y, Li, J, Zhou, J, Liu, C, Zhu, G, Guo, Z.
Deposit date:2013-09-28
Release date:2014-04-23
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.423 Å)
Cite:Molecular basis of the general base catalysis of an alpha / beta-hydrolase catalytic triad.
J.Biol.Chem., 289, 2014
4N19
DownloadVisualize
BU of 4n19 by Molmil
Structural basis of conformational transitions in the active site and 80 s loop in the FK506 binding protein FKBP12
Descriptor: Peptidyl-prolyl cis-trans isomerase FKBP1A, SULFATE ION
Authors:Mustafi, S.M, Brecher, M.B, Zhang, J, Li, H.M, Lemaster, D.M, Hernandez, G.
Deposit date:2013-10-03
Release date:2014-02-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural basis of conformational transitions in the active site and 80's loop in the FK506-binding protein FKBP12.
Biochem.J., 458, 2014
4N7C
DownloadVisualize
BU of 4n7c by Molmil
Structural re-examination of native Bla g 4
Descriptor: 4-(2-aminoethyl)phenol, Bla g 4 allergen variant 1, CITRIC ACID, ...
Authors:Offermann, L.R, Chan, S.L, Osinski, T, Tan, Y.W, Chew, F.T, Sivaraman, J, Mok, Y.K, Minor, W, Chruszcz, M.
Deposit date:2013-10-15
Release date:2014-05-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The major cockroach allergen Bla g 4 binds tyramine and octopamine.
Mol.Immunol., 60, 2014
4N0J
DownloadVisualize
BU of 4n0j by Molmil
Crystal structure of dimethyllysine hen egg-white lysozyme in complex with sclx4 at 1.9 A resolution
Descriptor: 25,26,27,28-tetrahydroxypentacyclo[19.3.1.1~3,7~.1~9,13~.1~15,19~]octacosa-1(25),3(28),4,6,9(27),10,12,15(26),16,18,21,23-dodecaene-5,11,17,23-tetrasulfonic acid, CHLORIDE ION, GLYCEROL, ...
Authors:McGovern, R.E, Crowley, P.B.
Deposit date:2013-10-02
Release date:2014-11-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural study of a small molecule receptor bound to dimethyllysine in lysozyme.
Chem Sci, 6, 2015
4OKS
DownloadVisualize
BU of 4oks by Molmil
Crystal Structure of Hepatitis C Virus NS3 Helicase Inhibitor Co-complex with Compound 19 [[6-(3,5-diaminophenyl)-1-(2-methoxy-5-nitrobenzyl)-1H-indol-3-yl]acetic acid]
Descriptor: CALCIUM ION, Serine protease NS3, [6-(3,5-diaminophenyl)-1-(2-methoxy-5-nitrobenzyl)-1H-indol-3-yl]acetic acid
Authors:Padyana, A.K.
Deposit date:2014-01-22
Release date:2014-03-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Integrated strategies for identifying leads that target the NS3 helicase of the hepatitis C virus.
J.Med.Chem., 57, 2014
4ONT
DownloadVisualize
BU of 4ont by Molmil
Ternary host recognition complex of complement factor H, C3d, and sialic acid
Descriptor: Complement C3d fragment, Complement factor H, GLYCEROL, ...
Authors:Blaum, B.S, Stehle, T.S.
Deposit date:2014-01-29
Release date:2014-11-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural basis for sialic acid-mediated self-recognition by complement factor H.
Nat.Chem.Biol., 11, 2015
4OA3
DownloadVisualize
BU of 4oa3 by Molmil
Crystal structure of the BA42 protein from BIZIONIA ARGENTINENSIS
Descriptor: CALCIUM ION, PROTEIN BA42
Authors:Otero, L.H, Klinke, S, Aran, M, Pellizza, L, Goldbaum, F.A, Cicero, D.
Deposit date:2014-01-03
Release date:2014-08-20
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Solution and crystal structure of BA42, a protein from the Antarctic bacterium Bizionia argentinensis comprised of a stand-alone TPM domain.
Proteins, 82, 2014
4OS1
DownloadVisualize
BU of 4os1 by Molmil
Crystal structure of urokinase-type plasminogen activator (uPA) complexed with bicyclic peptide UK601 (bicyclic 1)
Descriptor: ACETATE ION, SULFATE ION, Urokinase-type plasminogen activator, ...
Authors:Chen, S, Pojer, F, Heinis, C.
Deposit date:2014-02-12
Release date:2014-09-24
Last modified:2021-06-02
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Dithiol amino acids can structurally shape and enhance the ligand-binding properties of polypeptides.
Nat Chem, 6, 2014
4OLS
DownloadVisualize
BU of 4ols by Molmil
The amidase-2 domain of LysGH15
Descriptor: Endolysin, FE (III) ION, MAGNESIUM ION, ...
Authors:Gu, J, Ouyang, S, Liu, Z.J, Han, W.
Deposit date:2014-01-24
Release date:2014-06-04
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Structural and biochemical characterization reveals LysGH15 as an unprecedented "EF-hand-like" calcium-binding phage lysin.
Plos Pathog., 10, 2014
4MYD
DownloadVisualize
BU of 4myd by Molmil
1.37 Angstrom Crystal Structure of E. Coli 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (MenH) in complex with SHCHC
Descriptor: 2-(3-CARBOXYPROPIONYL)-6-HYDROXY-CYCLOHEXA-2,4-DIENE CARBOXYLIC ACID, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
Authors:Sun, Y, Yin, S, Feng, Y, Li, J, Zhou, J, Liu, C, Zhu, G, Guo, Z.
Deposit date:2013-09-27
Release date:2014-04-23
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.374 Å)
Cite:Molecular basis of the general base catalysis of an alpha / beta-hydrolase catalytic triad.
J.Biol.Chem., 289, 2014
4MXD
DownloadVisualize
BU of 4mxd by Molmil
1.45 angstronm crystal structure of E.coli 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (MenH)
Descriptor: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Sun, Y, Yin, S, Feng, Y, Li, J, Zhou, J, Liu, C, Zhu, G, Guo, Z.
Deposit date:2013-09-26
Release date:2014-04-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Molecular basis of the general base catalysis of an alpha / beta-hydrolase catalytic triad.
J.Biol.Chem., 289, 2014
4MZ9
DownloadVisualize
BU of 4mz9 by Molmil
Revised structure of E. coli SSB
Descriptor: Single-stranded DNA-binding protein
Authors:Oakley, A.J.
Deposit date:2013-09-29
Release date:2013-12-18
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Intramolecular binding mode of the C-terminus of Escherichia coli single-stranded DNA binding protein determined by nuclear magnetic resonance spectroscopy.
Nucleic Acids Res., 42, 2014
4NAG
DownloadVisualize
BU of 4nag by Molmil
Xanthomonins I III are a New Class of Lasso Peptides Featuringa Seven-Membered Macrolactam Ring
Descriptor: HEXANE-1,6-DIOL, Xanthomonin I
Authors:Hegemann, J.D, Zimmermann, M, Zhu, S, Steuber, H, Harms, K, Xie, X, Marahiel, M.A.
Deposit date:2013-10-22
Release date:2014-04-30
Last modified:2014-05-21
Method:X-RAY DIFFRACTION (0.81 Å)
Cite:Xanthomonins I-III: A New Class of Lasso Peptides with a Seven-Residue Macrolactam Ring.
Angew.Chem.Int.Ed.Engl., 53, 2014
4OS6
DownloadVisualize
BU of 4os6 by Molmil
Crystal structure of urokinase-type plasminogen activator (uPA) complexed with bicyclic peptide UK604 (bicyclic 2)
Descriptor: ACETATE ION, SULFATE ION, Urokinase-type plasminogen activator, ...
Authors:Chen, S, Pojer, F, Heinis, C.
Deposit date:2014-02-12
Release date:2014-09-24
Last modified:2021-06-02
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Dithiol amino acids can structurally shape and enhance the ligand-binding properties of polypeptides.
Nat Chem, 6, 2014
4OS4
DownloadVisualize
BU of 4os4 by Molmil
Crystal structure of urokinase-type plasminogen activator (uPA) complexed with bicyclic peptide UK603 (bicyclic 1)
Descriptor: ACETATE ION, CHLORIDE ION, GLYCEROL, ...
Authors:Chen, S, Pojer, F, Heinis, C.
Deposit date:2014-02-12
Release date:2014-09-24
Last modified:2021-06-02
Method:X-RAY DIFFRACTION (2 Å)
Cite:Dithiol amino acids can structurally shape and enhance the ligand-binding properties of polypeptides.
Nat Chem, 6, 2014
4NR3
DownloadVisualize
BU of 4nr3 by Molmil
Crystal Structure of a human Mms2/Ubc13 L121G mutant
Descriptor: Ubiquitin-conjugating enzyme E2 N, Ubiquitin-conjugating enzyme E2 variant 2
Authors:Hodge, C.D, Edwards, R.A, Glover, J.N.M.
Deposit date:2013-11-26
Release date:2014-12-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.802 Å)
Cite:Stochastic gate dynamics regulate the catalytic activity of ubiquitination enzymes.
J.Am.Chem.Soc., 136, 2014

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon