PDB: 8880 resultsInfo pagesStatus searchChemie searchBIRD

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2FO1	Crystal Structure of the CSL-Notch-Mastermind ternary complex bound to DNA Descriptor: 5'-D(*AP*AP*TP*CP*TP*TP*TP*CP*CP*CP*AP*CP*AP*GP*T)-3', 5'-D(*TP*TP*AP*CP*TP*GP*TP*GP*GP*GP*AP*AP*AP*GP*A)-3', Lin-12 and glp-1 phenotype protein 1, ... Authors: Wilson, J.J, Kovall, R.A. Deposit date: 2006-01-12 Release date: 2006-03-21 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (3.12 Å) Cite: Crystal structure of the CSL-Notch-Mastermind ternary complex bound to DNA. Cell(Cambridge,Mass.), 124, 2006
7XNY	High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ... Authors: Cheng, J, Beckmann, R. Deposit date: 2022-04-30 Release date: 2023-04-05 Method: ELECTRON MICROSCOPY (2.5 Å) Cite: A Dynamic rRNA Ribomethylome Drives Stemness in Acute Myeloid Leukemia. Cancer Discov, 13, 2023
7XNX	High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ... Authors: Cheng, J, Beckmann, R. Deposit date: 2022-04-30 Release date: 2023-04-05 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: A Dynamic rRNA Ribomethylome Drives Stemness in Acute Myeloid Leukemia. Cancer Discov, 13, 2023
6ZOJ	SARS-CoV-2-Nsp1-40S complex, composite map Descriptor: 18S ribosomal RNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ... Authors: Schubert, K, Karousis, E.D, Jomaa, A, Scaiola, A, Echeverria, B, Gurzeler, L.-A, Leibundgut, M.L, Thiel, V, Muehlemann, O, Ban, N. Deposit date: 2020-07-07 Release date: 2020-07-22 Last modified: 2021-02-10 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: SARS-CoV-2 Nsp1 binds the ribosomal mRNA channel to inhibit translation. Nat.Struct.Mol.Biol., 27, 2020
5LZU	Structure of the mammalian ribosomal termination complex with accommodated eRF1 Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ... Authors: Shao, S, Murray, J, Brown, A, Taunton, J, Ramakrishnan, V, Hegde, R.S. Deposit date: 2016-10-02 Release date: 2016-11-30 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (3.75 Å) Cite: Decoding Mammalian Ribosome-mRNA States by Translational GTPase Complexes. Cell, 167, 2016
5WFK	70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3) Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Fislage, M, Frank, J. Deposit date: 2017-07-12 Release date: 2018-05-02 Last modified: 2019-11-20 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Cryo-EM shows stages of initial codon selection on the ribosome by aa-tRNA in ternary complex with GTP and the GTPase-deficient EF-TuH84A. Nucleic Acids Res., 46, 2018
3SQ0	DNA Polymerase(L561A/S565G/Y567A) Ternary Complex with dUpNpp Opposite dA (Mn2+) Descriptor: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, 5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*(DOC))-3', 5'-D(*TP*CP*AP*AP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3', ... Authors: Xia, S, Konigsberg, W.H, Wang, J. Deposit date: 2011-07-04 Release date: 2011-10-12 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural Insights into Complete Metal Ion Coordination from Ternary Complexes of B Family RB69 DNA Polymerase. Biochemistry, 50, 2011
3TBL	Structure of Mono-ubiquitinated PCNA: Implications for DNA Polymerase Switching and Okazaki Fragment Maturation Descriptor: Proliferating cell nuclear antigen, Ubiquitin Authors: Zhang, Z, Lee, M, Lee, E, Zhang, S. Deposit date: 2011-08-07 Release date: 2012-05-23 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.903 Å) Cite: Structure of monoubiquitinated PCNA: Implications for DNA polymerase switching and Okazaki fragment maturation. Cell Cycle, 11, 2012
4MBE	Sac3:Sus1:Cdc31:Nup1 complex Descriptor: CALCIUM ION, Cell division control protein 31, Nuclear mRNA export protein SAC3, ... Authors: Jani, D, Meineke, B, Stewart, M. Deposit date: 2013-08-19 Release date: 2014-07-02 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.612 Å) Cite: Structural basis for binding the TREX2 complex to nuclear pores, GAL1 localisation and mRNA export. Nucleic Acids Res., 42, 2014
7WV3	Toll-like receptor3 linear cluster Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, RNA (80-MER), ... Authors: Lim, C.S, Jang, Y.H, Lee, G.Y, Han, G.M, Lee, J.O. Deposit date: 2022-02-09 Release date: 2022-11-16 Last modified: 2022-12-07 Method: ELECTRON MICROSCOPY (2.26 Å) Cite: TLR3 forms a highly organized cluster when bound to a poly(I:C) RNA ligand. Nat Commun, 13, 2022
8D6J	Human Ago2 bound to miR122(21nt) with PIWI loop swapped to AtAgo10 sequence Descriptor: MAGNESIUM ION, Protein argonaute-2, RNA (5'-R(P*UP*GP*GP*AP*GP*UP*GP*UP*GP*AP*CP*AP*AP*UP*GP*GP*UP*GP*UP*UP*U)-3') Authors: Xiao, Y, MacRae, I. Deposit date: 2022-06-06 Release date: 2023-05-03 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.5 Å) Cite: A tiny loop in the Argonaute PIWI domain tunes small RNA seed strength. Embo Rep., 24, 2023
7AJT	Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome) Descriptor: 13 kDa ribonucleoprotein-associated protein, 18S rRNA, 40S ribosomal protein S1-A, ... Authors: Cheng, J, Lau, B, Flemming, D, Venuta, G.L, Berninghausen, O, Beckmann, R, Hurt, E. Deposit date: 2020-09-29 Release date: 2020-12-30 Last modified: 2021-02-03 Method: ELECTRON MICROSCOPY (4.6 Å) Cite: Structure of the Maturing 90S Pre-ribosome in Association with the RNA Exosome. Mol.Cell, 81, 2021
7AJU	Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome) Descriptor: 13 kDa ribonucleoprotein-associated protein, 18S rRNA, 40S ribosomal protein S1-A, ... Authors: Cheng, J, Lau, B, Flemming, D, Venuta, G.L, Berninghausen, O, Beckmann, R, Hurt, E. Deposit date: 2020-09-29 Release date: 2020-12-30 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Structure of the Maturing 90S Pre-ribosome in Association with the RNA Exosome. Mol.Cell, 81, 2021
6ZOK	SARS-CoV-2-Nsp1-40S complex, focused on body Descriptor: 18S ribosomal RNA, 40S ribosomal protein S11, 40S ribosomal protein S13, ... Authors: Schubert, K, Karousis, E.D, Jomaa, A, Scaiola, A, Echeverria, B, Gurzeler, L.-A, Leibundgut, M, Thiel, V, Muehlemann, O, Ban, N. Deposit date: 2020-07-07 Release date: 2020-07-29 Last modified: 2021-02-10 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: SARS-CoV-2 Nsp1 binds the ribosomal mRNA channel to inhibit translation. Nat.Struct.Mol.Biol., 27, 2020
4V8Q	Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, ... Authors: Neubauer, C, Gillet, R, Kelley, A.C, Ramakrishnan, V. Deposit date: 2011-12-10 Release date: 2014-07-09 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Decoding in the absence of a codon by tmRNA and SmpB in the ribosome. Science, 335, 2012
6ZTN	E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Webster, M.W, Takacs, M, Weixlbaumer, A. Deposit date: 2020-07-20 Release date: 2020-09-16 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Structural basis of transcription-translation coupling and collision in bacteria. Science, 369, 2020
6ZTM	E. coli 70S-RNAP expressome complex in collided state without NusG Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Webster, M.W, Takacs, M, Weixlbaumer, A. Deposit date: 2020-07-20 Release date: 2020-09-16 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Structural basis of transcription-translation coupling and collision in bacteria. Science, 369, 2020
7OLE	Cryo-EM structure of the TELO2-TTI1-TTI2-RUVBL1-RUVBL2 complex Descriptor: ADENOSINE-5'-DIPHOSPHATE, RuvB-like 1, RuvB-like 2, ... Authors: Pal, M, Llorca, O, Pearl, L. Deposit date: 2021-05-19 Release date: 2021-07-07 Last modified: 2021-10-06 Method: ELECTRON MICROSCOPY (3.41 Å) Cite: Structure of the TELO2-TTI1-TTI2 complex and its function in TOR recruitment to the R2TP chaperone. Cell Rep, 36, 2021
8Y0W	dormant ribosome with eIF5A, eEF2 and SERBP1 Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ... Authors: Du, M, Zeng, F. Deposit date: 2024-01-23 Release date: 2024-02-07 Last modified: 2024-08-21 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Implication of Stm1 in the protection of eIF5A, eEF2 and tRNA through dormant ribosomes. Front Mol Biosci, 11, 2024
7YCX	The structure of INTAC-PEC complex Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB1,DNA-directed RNA polymerase II subunit RPB1, ... Authors: Zheng, H, Jin, Q, Wang, X, Qi, Y, Liu, W, Ren, Y, Zhao, D, Chen, F.X, Cheng, J, Chen, X, Xu, Y. Deposit date: 2022-07-02 Release date: 2023-03-15 Last modified: 2023-09-27 Method: ELECTRON MICROSCOPY (4.18 Å) Cite: Structural basis of INTAC-regulated transcription. Protein Cell, 14, 2023
6ZOL	SARS-CoV-2-Nsp1-40S complex, focused on head Descriptor: 18S ribosomal RNA, 40S ribosomal protein S10, 40S ribosomal protein S12, ... Authors: Schubert, K, Karousis, E.D, Jomaa, A, Scaiola, A, Echeverria, B, Gurzeler, L.-A, Leibundgut, M.L, Thiel, V, Muehlemann, O, Ban, N. Deposit date: 2020-07-07 Release date: 2020-07-22 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: SARS-CoV-2 Nsp1 binds the ribosomal mRNA channel to inhibit translation. Nat.Struct.Mol.Biol., 27, 2020
6ZTP	E. coli 70S-RNAP expressome complex in uncoupled state 6 Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Webster, M.W, Takacs, M, Weixlbaumer, A. Deposit date: 2020-07-20 Release date: 2020-09-16 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural basis of transcription-translation coupling and collision in bacteria. Science, 369, 2020
8Y0X	Dormant ribosome with SERBP1 Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ... Authors: Du, M, Zeng, F. Deposit date: 2024-01-23 Release date: 2024-02-07 Last modified: 2024-08-21 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Implication of Stm1 in the protection of eIF5A, eEF2 and tRNA through dormant ribosomes. Front Mol Biosci, 11, 2024
7OM9	Thosea asigna virus RdRP domain Descriptor: RNA-dependent RNA polymerase Authors: Ferrero, D.S, Falqui, M, Verdaguer, N. Deposit date: 2021-05-21 Release date: 2021-07-28 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (3 Å) Cite: Snapshots of a Non-Canonical RdRP in Action. Viruses, 13, 2021
6T59	Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex Descriptor: 28S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ... Authors: Lin, Z, Gasic, I, Chandrasekaran, V, Peters, N, Shao, S, Ramakrishnan, V, Mitchison, T.J, Hegde, R.S. Deposit date: 2019-10-15 Release date: 2019-11-27 Last modified: 2020-01-15 Method: ELECTRON MICROSCOPY (3.11 Å) Cite: TTC5 mediates autoregulation of tubulin via mRNA degradation. Science, 367, 2020

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