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8VL9
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Crystal structure of EloBC-VHL-CDO1 complex bound to compound 8 molecular glue
Descriptor: CITRIC ACID, Cysteine dioxygenase type 1, Elongin-B, ...
Authors:Shu, W, Ma, X, Tutter, A, Buckley, D, Golosov, A, Michaud, G.
Deposit date:2024-01-11
Release date:2024-03-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A small molecule VHL molecular glue degrader for cysteine dioxygenase 1
To Be Published
8VL7
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BU of 8vl7 by Molmil
Co-crystal structure of human TREX1 in complex with an inhibitor
Descriptor: (2P)-2-[3-bromo-2-(2-hydroxyethoxy)phenyl]-5-hydroxy-1-methyl-N-(1,2-oxazol-4-yl)-6-oxo-1,6-dihydropyrimidine-4-carboxamide, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Dehghani-Tafti, S, Dong, A, Li, Y, Ackloo, S, Arrowsmith, C.H, Edwards, A.M, Halabelian, L.
Deposit date:2024-01-11
Release date:2024-01-24
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Co-crystal structure of human TREX1 in complex with an inhibitor
To be published
8VKT
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Crystallographic structure of dimetalated DapE from Enterococcus faecium
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Probable succinyl-diaminopimelate desuccinylase, ...
Authors:Gonzalez-Segura, L, Diaz-Vilchis, A, Terrazas-Lopez, M, Diaz-Sanchez, A.G.
Deposit date:2024-01-09
Release date:2024-05-29
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (1.398 Å)
Cite:The three-dimensional structure of DapE from Enterococcus faecium reveals new insights into DapE/ArgE subfamily ligand specificity.
Int.J.Biol.Macromol., 270, 2024
8VKF
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The crystal structure of wild-type CYP199A4 bound to 4-propionylbenzoic acid
Descriptor: 4-propanoylbenzoic acid, CHLORIDE ION, Cytochrome P450, ...
Authors:Podgorski, M.N, Bell, S.G.
Deposit date:2024-01-09
Release date:2024-05-08
Last modified:2024-07-31
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Selective alpha-Hydroxyketone Formation and Subsequent C-C Bond Cleavage by Cytochrome P450 Monooxygenase Enzymes
Acs Catalysis, 14, 2024
8VKD
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BU of 8vkd by Molmil
Crystal structure of dehaloperoxidase A in complex with substrate 4-nitrocatechol
Descriptor: 4-NITROCATECHOL, DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, ...
Authors:Aktar, M.S, de Serrano, V.S, Ghiladi, R.A, Franzen, S.
Deposit date:2024-01-08
Release date:2024-07-17
Last modified:2024-07-24
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural Comparison of Substrate Binding Sites in Dehaloperoxidase A and B.
Biochemistry, 63, 2024
8VKC
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Crystal structure of dehaloperoxidase A in complex with substrate 4-nitrophenol
Descriptor: Dehaloperoxidase A, GLYCEROL, P-NITROPHENOL, ...
Authors:Aktar, M.S, de Serrano, V.S, Ghiladi, R.A, Franzen, S.
Deposit date:2024-01-08
Release date:2024-07-17
Last modified:2024-07-24
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Structural Comparison of Substrate Binding Sites in Dehaloperoxidase A and B.
Biochemistry, 63, 2024
8VKB
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BU of 8vkb by Molmil
Crystal structure of Plasmodium vivax glycylpeptide N-tetradecanoyltransferase (N-myristoyltransferase, NMT) bound to myristoyl-CoA and inhibitor 10b
Descriptor: CHLORIDE ION, GLYCEROL, Glycylpeptide N-tetradecanoyltransferase, ...
Authors:Fenwick, M.K, Staker, B.L, Phan, I.Q, Early, J, Myler, P.J, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2024-01-08
Release date:2024-07-17
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Exploring Subsite Selectivity within Plasmodium vivax N -Myristoyltransferase Using Pyrazole-Derived Inhibitors.
J.Med.Chem., 67, 2024
8VKA
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Crystal structure of Plasmodium vivax glycylpeptide N-tetradecanoyltransferase (N-myristoyltransferase, NMT) bound to myristoyl-CoA and inhibitor 9c
Descriptor: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, CHLORIDE ION, GLYCEROL, ...
Authors:Fenwick, M.K, Staker, B.L, Phan, I.Q, Early, J, Myler, P.J, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2024-01-08
Release date:2024-07-17
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Exploring Subsite Selectivity within Plasmodium vivax N -Myristoyltransferase Using Pyrazole-Derived Inhibitors.
J.Med.Chem., 67, 2024
8VK2
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BU of 8vk2 by Molmil
X-ray crystal structure of human IgE 4C8 Fab
Descriptor: IgE 4C8 heavy chain, IgE 4C8 light chain
Authors:Khatri, K, Ball, A, Smith, S.A, Champan, M.D, Pomes, A, Chruszcz, M.
Deposit date:2024-01-08
Release date:2024-06-19
Last modified:2024-08-21
Method:X-RAY DIFFRACTION (2.508 Å)
Cite:Structural analysis of human IgE monoclonal antibody epitopes on dust mite allergen Der p 2.
J.Allergy Clin.Immunol., 154, 2024
8VK1
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X-ray crystal structure of human IgE 4C8 Fab complex with Der p 2.0103
Descriptor: Der p 2 variant 3, IgE 4C8 heavy chain, IgE 4C8 light chain
Authors:Khatri, K, Ball, A, Smith, S.A, Champan, M.D, Pomes, A, Chruszcz, M.
Deposit date:2024-01-08
Release date:2024-06-19
Last modified:2024-08-21
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Structural analysis of human IgE monoclonal antibody epitopes on dust mite allergen Der p 2.
J.Allergy Clin.Immunol., 154, 2024
8VJN
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BU of 8vjn by Molmil
Myxococcus xanthus encapsulin cargo protein EncD in complex with flavin mononucleotide
Descriptor: Encapsulin nanocompartment cargo protein EncD, FLAVIN MONONUCLEOTIDE
Authors:Eren, E.
Deposit date:2024-01-07
Release date:2024-05-08
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Myxococcus xanthus encapsulin cargo protein EncD is a flavin-binding protein with ferric reductase activity.
Proc.Natl.Acad.Sci.USA, 121, 2024
8VJ3
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BU of 8vj3 by Molmil
Crystal Structure of Betaine aldehyde dehydrogenase (BetB) from Klebsiella aerogenes (FAD bound)
Descriptor: Betaine aldehyde dehydrogenase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2024-01-05
Release date:2024-01-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of Betaine aldehyde dehydrogenase (BetB) from Klebsiella aerogenes (FAD bound)
To be published
8VIS
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BU of 8vis by Molmil
Human TMPRSS11D complexed with a disulfide-linked autoinhibitory DDDDK peptide
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, MAGNESIUM ION, ...
Authors:Fraser, B.J, Dong, A, Ilyassov, O, Kenney, T, Li, Y.Y, Seitova, A, Li, Y, Hejazi, Z, Edwards, A, Benard, F, Arrowsmith, C.
Deposit date:2024-01-05
Release date:2024-01-31
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Human TMPRSS11D complexed with a disulfide-linked autoinhibitory DDDDK peptide
To Be Published
8VHU
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BU of 8vhu by Molmil
Crystal structure of dATP bound E. coli class Ia ribonucleotide reductase alpha construct fused with the C-terminal tail of E. coli class Ia beta subunit
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CHLORIDE ION, Fusion protein of Ribonucleoside-diphosphate reductase 1 subunits alpha and beta, ...
Authors:Funk, M.A, Zimanyi, C.M, Drennan, C.L.
Deposit date:2024-01-02
Release date:2024-09-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:How ATP and dATP Act as Molecular Switches to Regulate Enzymatic Activity in the Prototypical Bacterial Class Ia Ribonucleotide Reductase.
Biochemistry, 2024
8VHR
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BU of 8vhr by Molmil
Crystal structure of E. coli class Ia ribonucleotide reductase alpha subunit W28A variant bound to dATP and GTP
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Funk, M.A, Zimanyi, C.M, Drennan, C.L.
Deposit date:2024-01-02
Release date:2024-09-04
Method:X-RAY DIFFRACTION (3.55 Å)
Cite:How ATP and dATP Act as Molecular Switches to Regulate Enzymatic Activity in the Prototypical Bacterial Class Ia Ribonucleotide Reductase.
Biochemistry, 2024
8VHQ
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BU of 8vhq by Molmil
Crystal structure of E. coli class Ia ribonucleotide reductase alpha subunit W28A variant bound to dATP and ATP
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Funk, M.A, Zimanyi, C.M, Drennan, C.L.
Deposit date:2024-01-02
Release date:2024-09-04
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:How ATP and dATP Act as Molecular Switches to Regulate Enzymatic Activity in the Prototypical Bacterial Class Ia Ribonucleotide Reductase.
Biochemistry, 2024
8VHP
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BU of 8vhp by Molmil
Crystal structure of E. coli class Ia ribonucleotide reductase alpha subunit W28A variant bound to CDP and two molecules of ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CYTIDINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Funk, M.A, Zimanyi, C.M, Drennan, C.L.
Deposit date:2024-01-02
Release date:2024-09-04
Method:X-RAY DIFFRACTION (2.608 Å)
Cite:How ATP and dATP Act as Molecular Switches to Regulate Enzymatic Activity in the Prototypical Bacterial Class Ia Ribonucleotide Reductase.
Biochemistry, 2024
8VHO
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BU of 8vho by Molmil
Crystal Structure of E. coli class Ia ribonucleotide reductase alpha subunit bound to dATP
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, ...
Authors:Funk, M.A, Zimanyi, C.M, Drennan, C.L.
Deposit date:2024-01-02
Release date:2024-09-04
Method:X-RAY DIFFRACTION (2.548 Å)
Cite:How ATP and dATP Act as Molecular Switches to Regulate Enzymatic Activity in the Prototypical Bacterial Class Ia Ribonucleotide Reductase.
Biochemistry, 2024
8VHN
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BU of 8vhn by Molmil
Crystal Structure of E. coli class Ia ribonucleotide reductase alpha subunit bound to two ATP molecules
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, ...
Authors:Funk, M.A, Zimanyi, C.M, Drennan, C.L.
Deposit date:2024-01-02
Release date:2024-09-04
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:How ATP and dATP Act as Molecular Switches to Regulate Enzymatic Activity in the Prototypical Bacterial Class Ia Ribonucleotide Reductase.
Biochemistry, 2024
8VHL
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BU of 8vhl by Molmil
Structure of DHODH in Complex with Ligand 17
Descriptor: ACETATE ION, Dihydroorotate dehydrogenase (quinone), mitochondrial, ...
Authors:Shaffer, P.L.
Deposit date:2024-01-02
Release date:2024-04-03
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Discovery of Alternative Binding Poses through Fragment-Based Identification of DHODH Inhibitors.
Acs Med.Chem.Lett., 15, 2024
8VHH
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BU of 8vhh by Molmil
Engineered holo tryptophan synthase (Tm9D8*) derived from T. maritima TrpB
Descriptor: PHOSPHATE ION, POTASSIUM ION, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Porter, N.J, Johnston, K.E, Almhjell, P.J, Arnold, F.H.
Deposit date:2024-01-02
Release date:2024-08-14
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:A combinatorially complete epistatic fitness landscape in an enzyme active site.
Proc.Natl.Acad.Sci.USA, 121, 2024
8VHE
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Crystal Structure of Human IDH1 R132Q in Complex with NADPH-TCEP Adduct
Descriptor: 3,3',3''-({(4R)-1-[(2R,3R,4S,5R)-5-({[(S)-{[(S)-{[(2R,3R,4R,5R)-5-(6-amino-9H-purin-9-yl)-3-hydroxy-4-(phosphonooxy)oxolan-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}methyl)-3,4-dihydroxyoxolan-2-yl]-3-carbamoyl-1,4-dihydropyridin-4-yl}-lambda~5~-phosphanetriyl)tripropanoic acid, CALCIUM ION, CHLORIDE ION, ...
Authors:Mealka, M, Sohl, C.D, Huxford, T.
Deposit date:2023-12-31
Release date:2024-04-24
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:Active site remodeling in tumor-relevant IDH1 mutants drives distinct kinetic features and potential resistance mechanisms.
Nat Commun, 15, 2024
8VHD
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Crystal Structure of Human IDH1 R132Q in complex with NADPH and Isocitrate
Descriptor: CALCIUM ION, GLYCEROL, IODIDE ION, ...
Authors:Mealka, M, Sohl, C.D, Huxford, T.
Deposit date:2023-12-31
Release date:2024-04-24
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Active site remodeling in tumor-relevant IDH1 mutants drives distinct kinetic features and potential resistance mechanisms.
Nat Commun, 15, 2024
8VHC
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BU of 8vhc by Molmil
Crystal Structure of Human IDH1 R132Q in complex with NADPH
Descriptor: GLYCEROL, Isocitrate dehydrogenase [NADP] cytoplasmic, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Mealka, M, Sohl, C.D, Huxford, T.
Deposit date:2023-12-31
Release date:2024-04-24
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:Active site remodeling in tumor-relevant IDH1 mutants drives distinct kinetic features and potential resistance mechanisms.
Nat Commun, 15, 2024
8VHB
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Crystal Structure of Human IDH1 R132Q in complex with NADPH and Alpha-Ketoglutarate
Descriptor: (3~{S})-3-[(4~{S})-3-aminocarbonyl-1-[(2~{R},3~{R},4~{S},5~{R})-5-[[[[(2~{R},3~{R},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxymethyl]-3,4-bis(oxidanyl)oxolan-2-yl]-4~{H}-pyridin-4-yl]-2-oxidanylidene-pentanedioic acid, 2-OXOGLUTARIC ACID, CALCIUM ION, ...
Authors:Mealka, M, Sohl, C.D, Huxford, T.
Deposit date:2023-12-31
Release date:2024-04-24
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Active site remodeling in tumor-relevant IDH1 mutants drives distinct kinetic features and potential resistance mechanisms.
Nat Commun, 15, 2024

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PDB entries from 2024-09-11

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