PDB: 72960 resultsInfo pagesStatus searchChemie searchBIRD

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5KIP	Asymmetric unit for the coat proteins of phage Qbeta Descriptor: Coat protein Authors: Gorzelnik, K.V, Cui, Z, Zhang, J. Deposit date: 2016-06-16 Release date: 2016-10-05 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Asymmetric cryo-EM structure of the canonical Allolevivirus Q beta reveals a single maturation protein and the genomic ssRNA in situ. Proc.Natl.Acad.Sci.USA, 113, 2016
6DVC	Crystal structure of Mycobacterium tuberculosis transcription initiation complex(ECF sigma factor L) containing 5nt RNA with 6nt spacer Descriptor: DNA (5'-D(*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*GP*AP*GP*G)-3'), DNA (5'-D(P*CP*GP*TP*GP*TP*CP*AP*GP*TP*AP*GP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*C)-3'), DNA-directed RNA polymerase subunit alpha, ... Authors: Lin, W, Das, K, Feng, Y, Ebright, R.H. Deposit date: 2018-06-23 Release date: 2019-02-20 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Structural basis of ECF-sigma-factor-dependent transcription initiation. Nat Commun, 10, 2019
6DVB	Crystal structure of Mycobacterium tuberculosis transcription initiation complex(ECF sigma factor L) containing 5nt RNA with 5nt spacer Descriptor: DNA (5'-D(*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*GP*AP*GP*G)-3'), DNA (5'-D(P*CP*GP*TP*GP*TP*CP*AP*GP*TP*AP*GP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*C)-3'), DNA-directed RNA polymerase subunit alpha, ... Authors: Lin, W, Das, K, Feng, Y, Ebright, R.H. Deposit date: 2018-06-23 Release date: 2019-02-20 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (3.8 Å) Cite: Structural basis of ECF-sigma-factor-dependent transcription initiation. Nat Commun, 10, 2019
5AJ3	Structure of the small subunit of the mammalian mitoribosome Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, MITORIBOSOMAL 12S RRNA, ... Authors: Greber, B.J, Bieri, P, Leibundgut, M, Leitner, A, Aebersold, R, Boehringer, D, Ban, N. Deposit date: 2015-02-20 Release date: 2015-04-22 Last modified: 2019-12-18 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Ribosome. The complete structure of the 55S mammalian mitochondrial ribosome. Science, 348, 2015
5WU4	Crystal structure of human Tut1 bound with MgATP, form II Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ... Authors: Yamashita, S, Tomita, K. Deposit date: 2016-12-16 Release date: 2017-05-31 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Crystal structures of U6 snRNA-specific terminal uridylyltransferase Nat Commun, 8, 2017
5WU3	Crystal structure of human Tut1 bound with MgUTP, form II Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, MAGNESIUM ION, ... Authors: Yamashita, S, Tomita, K. Deposit date: 2016-12-16 Release date: 2017-05-31 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.703 Å) Cite: Crystal structures of U6 snRNA-specific terminal uridylyltransferase Nat Commun, 8, 2017
1EVP	CRYSTAL STRUCTURE OF THE CHIMERICAL DECAMER D(CCACTAGTG)R(G) Descriptor: DNA/RNA (5'-D(*CP*CP*AP*CP*TP*AP*GP*TP*GP)-R(*G)-3') Authors: Wahl, M.C, Sundaralingam, M. Deposit date: 2000-04-20 Release date: 2000-05-01 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.8 Å) Cite: B-form to A-form conversion by a 3'-terminal ribose: crystal structure of the chimera d(CCACTAGTG)r(G). Nucleic Acids Res., 28, 2000
7CSZ	Crystal structure of the N-terminal tandem RRM domains of RBM45 in complex with single-stranded DNA Descriptor: DNA (5'-D(*CP*GP*AP*CP*GP*GP*GP*AP*CP*GP*C)-3'), RNA-binding protein 45 Authors: Chen, X, Yang, Z, Wang, W, Wang, M. Deposit date: 2020-08-17 Release date: 2021-02-03 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural basis for RNA recognition by the N-terminal tandem RRM domains of human RBM45. Nucleic Acids Res., 49, 2021
2LUQ	Solution structure of double-stranded RNA binding domain of S.cerevisiae RNase III (rnt1p) Descriptor: Ribonuclease 3 Authors: Wang, Z, Feigon, J. Deposit date: 2012-06-19 Release date: 2012-12-05 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Intrinsic Dynamics of an Extended Hydrophobic Core in the S. cerevisiae RNase III dsRBD Contributes to Recognition of Specific RNA Binding Sites. J.Mol.Biol., 425, 2013
2MKD	Human JAZ ZF3 Residues 168-227 Descriptor: ZINC ION, Zinc finger protein 346 Authors: Wright, P, Dyson, J, Burge, R, Martinez-Yamout, M. Deposit date: 2014-02-05 Release date: 2014-03-19 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structural Characterization of Interactions between the Double-Stranded RNA-Binding Zinc Finger Protein JAZ and Nucleic Acids. Biochemistry, 53, 2014
5W4D	C. japonica N-domain, Selenomethionine mutant Descriptor: 1,2-ETHANEDIOL, 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE, CHLORIDE ION, ... Authors: Aoki, S.T, Bingman, C.A, Kimble, J. Deposit date: 2017-06-10 Release date: 2018-06-13 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.599 Å) Cite: C. elegans germ granules require both assembly and localized regulators for mRNA repression. Nat Commun, 12, 2021
5WDX	Structure of NS3 from HCV strain JFH-1 that is an unusually robust helicase that is primed to bind and unwind viral RNA Descriptor: JFH-1 NS3, MAGNESIUM ION, ZINC ION Authors: Zhou, T, Pyle, A.M. Deposit date: 2017-07-06 Release date: 2017-11-08 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.23 Å) Cite: NS3 from Hepatitis C Virus Strain JFH-1 Is an Unusually Robust Helicase That Is Primed To Bind and Unwind Viral RNA. J. Virol., 92, 2018
2M88	NMR structure of a two-domain RNA-binding fragment of Nrd1 Descriptor: Protein NRD1 Authors: Bacikova, V, Pasulka, J, Kubicek, K, Stefl, R. Deposit date: 2013-05-08 Release date: 2014-05-14 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structure and semi-sequence-specific RNA binding of Nrd1. Nucleic Acids Res., 42, 2014
2B7T	Structure of ADAR2 dsRBM1 Descriptor: Double-stranded RNA-specific editase 1 Authors: Stefl, R, Xu, M, Skrisovska, L, Emeson, R.B, Allain, F.H.-T. Deposit date: 2005-10-05 Release date: 2006-03-14 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structure and specific RNA binding of ADAR2 double-stranded RNA binding motifs. Structure, 14, 2006
2B7V	Structure of ADAR2 dsRBM2 Descriptor: Double-stranded RNA-specific editase 1 Authors: Stefl, R, Xu, M, Skrisovska, L, Emeson, R.B, Allain, F.H.-T. Deposit date: 2005-10-05 Release date: 2006-03-14 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structure and specific RNA binding of ADAR2 double-stranded RNA binding motifs. Structure, 14, 2006
7CTT	Cryo-EM structure of Favipiravir bound to replicating polymerase complex of SARS-CoV-2 in the pre-catalytic state. Descriptor: MAGNESIUM ION, Non-structural protein 7, Non-structural protein 8, ... Authors: Peng, Q, Peng, R, Shi, Y. Deposit date: 2020-08-20 Release date: 2020-09-02 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Structural Basis of SARS-CoV-2 Polymerase Inhibition by Favipiravir. Innovation (N Y), 2, 2021
2YV0	Structural and Thermodynamic Analyses of E. coli ribonuclease HI Variant with Quintuple Thermostabilizing Mutations Descriptor: Ribonuclease HI Authors: Haruki, M, Motegi, T, Tadokoro, T, Koga, Y, Takano, K, Kanaya, S. Deposit date: 2007-04-06 Release date: 2008-03-18 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Structural and thermodynamic analyses of Escherichia coli RNase HI variant with quintuple thermostabilizing mutations. Febs J., 274, 2007
2BBV	THE REFINED THREE-DIMENSIONAL STRUCTURE OF AN INSECT VIRUS AT 2.8 ANGSTROMS RESOLUTION Descriptor: CALCIUM ION, PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN), RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') Authors: Wery, J.-P, Reddy, V.S, Hosur, M.V, Johnson, J.E. Deposit date: 1994-06-06 Release date: 1994-08-31 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.8 Å) Cite: The refined three-dimensional structure of an insect virus at 2.8 A resolution. J.Mol.Biol., 235, 1994
4KGN	Crystal structure of a tRNA (cytidine(34)-2'-O)-methyltransferase bound to S-adenosyl homocysteine Descriptor: CHLORIDE ION, S-ADENOSYL-L-HOMOCYSTEINE, tRNA (cytidine(34)-2'-O)-methyltransferase Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2013-04-29 Release date: 2013-05-08 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Crystal structure of a TrmH family tRNA methyltransferase bound to S-adenosyl homocysteine To be Published
2MJH	Solution structure of the GLD-1 RNA-binding domain in complex with RNA Descriptor: 5'-CUACUCAUAU-3', Female germline-specific tumor suppressor gld-1 Authors: Daubner, G.M, Allain, F.H.-T. Deposit date: 2014-01-09 Release date: 2014-05-28 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structural and functional implications of the QUA2 domain on RNA recognition by GLD-1. Nucleic Acids Res., 42, 2014
1QM9	NMR, REPRESENTATIVE STRUCTURE Descriptor: POLYPYRIMIDINE TRACT-BINDING PROTEIN Authors: Conte, M.R, Grune, T, Curry, S, Matthews, S. Deposit date: 1999-09-22 Release date: 2000-07-03 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structure of Tandem RNA Recognition Motifs from Polypyrimidine Tract Binding Protein Reveals Novel Features of the Rrm Fold Embo J., 19, 2000
2AWQ	Solution Structure of pseudouridine-32 modified anticodon stem-loop of E. coli tRNAPhe Descriptor: 5'-R(*GP*GP*GP*GP*AP*(PSU)P*UP*GP*AP*AP*AP*AP*UP*CP*CP*CP*C)-3' Authors: Cabello-Villegas, J, Nikonowicz, E.P. Deposit date: 2005-09-01 Release date: 2006-01-17 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of psi32-modified anticodon stem-loop of Escherichia coli tRNAPhe. Nucleic Acids Res., 33, 2005
4K51	Crystal Structure of the PCI domain of eIF3a Descriptor: Eukaryotic translation initiation factor 3 subunit A Authors: Khoshnevis, S, Neumann, P, Ficner, R. Deposit date: 2013-04-12 Release date: 2014-01-15 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Structural integrity of the PCI domain of eIF3a/TIF32 is required for mRNA recruitment to the 43S pre-initiation complexes. Nucleic Acids Res., 42, 2014
1R6Z	The Crystal Structure of the Argonaute2 PAZ domain (as a MBP fusion) Descriptor: Chimera of Maltose-binding periplasmic protein and Argonaute 2, NICKEL (II) ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose Authors: Song, J.J, Liu, J, Tolia, N.H, Schneiderman, J, Smith, S.K, Martienssen, R.A, Hannon, G.J, Joshua-Tor, L. Deposit date: 2003-10-17 Release date: 2004-01-13 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.8 Å) Cite: The crystal structure of the Argonaute2 PAZ domain reveals an RNA binding motif in RNAi effector complexes. Nat.Struct.Biol., 10, 2003
2AWZ	Hepatitis C Virus NS5b RNA Polymerase in complex with a covalent inhibitor (5h) Descriptor: 5R-(4-BROMOPHENYLMETHYL)-3-(BENZENESULFONYLAMINO)-4-OXO-2-THIONOTHIAZOLIDINE, Genome polyprotein, SULFATE ION Authors: Powers, J.P, Piper, D.E, Li, Y, Mayorga, V, Anzola, J, Chen, J.M, Jaen, J.C, Lee, G, Liu, J, Peterson, M.G, Tonn, G.R, Ye, Q, Walker, N.P, Wang, Z. Deposit date: 2005-09-02 Release date: 2006-01-24 Last modified: 2021-10-20 Method: X-RAY DIFFRACTION (2.15 Å) Cite: SAR and Mode of Action of Novel Non-Nucleoside Inhibitors of Hepatitis C NS5b RNA Polymerase. J.Med.Chem., 49, 2006

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