PDB: 5689 resultsInfo pagesStatus searchChemie searchBIRD

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3G0K	Crystal structure of a protein of unknown function with a cystatin-like fold (saro_2880) from novosphingobium aromaticivorans dsm at 1.30 A resolution Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, CALCIUM ION, ... Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2009-01-28 Release date: 2009-02-10 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (1.3 Å) Cite: Crystal structure of protein of unknown function with a cystatin-like fold (YP_498150.1) from Novosphingobium aromaticivorans DSM 12444 at 1.30 A resolution To be published
3EC4	Crystal structure of Putative Acetyltransferase from the GNAT family (YP_497011.1) from NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 at 1.80 A resolution Descriptor: ACETATE ION, Putative Acetyltransferase from the GNAT family Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2008-08-28 Release date: 2008-09-09 Last modified: 2023-02-01 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal structure of Putative Acetyltransferase from the GNAT family (YP_497011.1) from NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 at 1.80 A resolution To be published
2QTQ	Crystal structure of a predicted dna-binding transcriptional regulator (saro_1072) from novosphingobium aromaticivorans dsm at 1.85 A resolution Descriptor: 1,2-ETHANEDIOL, NITRATE ION, Transcriptional regulator, ... Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2007-08-02 Release date: 2007-08-21 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Crystal structure of predicted DNA-binding transcriptional regulator (YP_496351.1) from Novosphingobium aromaticivorans DSM 12444 at 1.85 A resolution To be published
3C5Y	Crystal structure of a putative ribose 5-phosphate isomerase (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 A resolution Descriptor: 1,2-ETHANEDIOL, NITRATE ION, Ribose/galactose isomerase Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2008-02-01 Release date: 2008-02-19 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.81 Å) Cite: Crystal structure of putative ribose 5-phosphate isomerase (YP_001165900.1) from Novosphingobium aromaticivorans DSM 12444 at 1.81 A resolution To be published
4K8G	Crystal structure of D-Mannonate dehydratase from Novosphingobium aromaticivorans mutant (V161A, R163A, K165G, L166A, Y167G, Y168A, E169G) Descriptor: GLYCEROL, MAGNESIUM ION, Mandelate racemase/muconate lactonizing enzyme, ... Authors: Lukk, T, Wichelecki, D, Gerlt, J.A, Nair, S.K. Deposit date: 2013-04-18 Release date: 2013-05-22 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.25 Å) Cite: Crystal structure of D-Mannonate dehydratase from Novosphingobium aromaticivorans mutant (V161A, R163A, K165G, L166A, Y167G, Y168A, E169G) To be Published
6R0V	Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with hydrolysis product of compound 4b Descriptor: 2-[[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]carbamoyl]-4-nitro-benzoic acid, CHLORIDE ION, Cereblon isoform 4, ... Authors: Heim, C, Hartmann, M.D. Deposit date: 2019-03-13 Release date: 2019-08-07 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.6 Å) Cite: De-Novo Design of Cereblon (CRBN) Effectors Guided by Natural Hydrolysis Products of Thalidomide Derivatives. J.Med.Chem., 62, 2019
6R0U	Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with compound 5a and hydrolysis product Descriptor: 3-azanyl-2-[[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]carbamoyl]benzoic acid, 4-azanyl-2-[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]isoindole-1,3-dione, CHLORIDE ION, ... Authors: Heim, C, Hartmann, M.D. Deposit date: 2019-03-13 Release date: 2019-08-07 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.7 Å) Cite: De-Novo Design of Cereblon (CRBN) Effectors Guided by Natural Hydrolysis Products of Thalidomide Derivatives. J.Med.Chem., 62, 2019
6R0S	Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with compound 4a and hydrolysis product Descriptor: 2-[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]-4-nitro-isoindole-1,3-dione, 2-[[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]carbamoyl]-6-nitro-benzoic acid, CEREBLON ISOFORM 4, ... Authors: Heim, C, Hartmann, M.D. Deposit date: 2019-03-13 Release date: 2019-08-07 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.55 Å) Cite: De-Novo Design of Cereblon (CRBN) Effectors Guided by Natural Hydrolysis Products of Thalidomide Derivatives. J.Med.Chem., 62, 2019
6R0Q	Mutant cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with thalidomide metabolite alpha-(o-carboxybenzamido)glutarimide Descriptor: 2-[[(3~{S})-2,6-bis(oxidanylidene)piperidin-3-yl]carbamoyl]benzoic acid, ALA-ALA-ALA, ALA-ALA-ALA-ALA, ... Authors: Heim, C, Hartmann, M.D. Deposit date: 2019-03-13 Release date: 2019-08-07 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.5 Å) Cite: De-Novo Design of Cereblon (CRBN) Effectors Guided by Natural Hydrolysis Products of Thalidomide Derivatives. J.Med.Chem., 62, 2019
6R11	Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with compound 5b Descriptor: 5-azanyl-2-[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]isoindole-1,3-dione, CHLORIDE ION, Cereblon isoform 4, ... Authors: Heim, C, Hartmann, M.D. Deposit date: 2019-03-13 Release date: 2019-08-07 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.75 Å) Cite: De-Novo Design of Cereblon (CRBN) Effectors Guided by Natural Hydrolysis Products of Thalidomide Derivatives. J.Med.Chem., 62, 2019
6R13	Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with compound 7f Descriptor: CHLORIDE ION, Cereblon isoform 4, PHOSPHATE ION, ... Authors: Heim, C, Hartmann, M.D. Deposit date: 2019-03-13 Release date: 2019-08-07 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.65 Å) Cite: De-Novo Design of Cereblon (CRBN) Effectors Guided by Natural Hydrolysis Products of Thalidomide Derivatives. J.Med.Chem., 62, 2019
6R12	Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with compound 7b Descriptor: CHLORIDE ION, Cereblon isoform 4, PHOSPHATE ION, ... Authors: Heim, C, Hartmann, M.D. Deposit date: 2019-03-13 Release date: 2019-08-07 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.74 Å) Cite: De-Novo Design of Cereblon (CRBN) Effectors Guided by Natural Hydrolysis Products of Thalidomide Derivatives. J.Med.Chem., 62, 2019
6R18	Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with compound 11a Descriptor: CHLORIDE ION, Cereblon isoform 4, PHOSPHATE ION, ... Authors: Heim, C, Hartmann, M.D. Deposit date: 2019-03-14 Release date: 2019-08-07 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.35 Å) Cite: De-Novo Design of Cereblon (CRBN) Effectors Guided by Natural Hydrolysis Products of Thalidomide Derivatives. J.Med.Chem., 62, 2019
6R19	Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with compound 20a Descriptor: Cereblon isoform 4, PHOSPHATE ION, S-Thalidomide, ... Authors: Heim, C, Hartmann, M.D. Deposit date: 2019-03-14 Release date: 2019-08-07 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.45 Å) Cite: De-Novo Design of Cereblon (CRBN) Effectors Guided by Natural Hydrolysis Products of Thalidomide Derivatives. J.Med.Chem., 62, 2019
6R1A	Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with compound 20b Descriptor: Cereblon isoform 4, PHOSPHATE ION, S-Thalidomide, ... Authors: Heim, C, Hartmann, M.D. Deposit date: 2019-03-14 Release date: 2019-08-07 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.54 Å) Cite: De-Novo Design of Cereblon (CRBN) Effectors Guided by Natural Hydrolysis Products of Thalidomide Derivatives. J.Med.Chem., 62, 2019
6R1D	Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with compound 7d, co-crystallized Descriptor: (phenylmethyl) ~{N}-[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]carbamate, Cereblon isoform 4, ZINC ION Authors: Heim, C, Hartmann, M.D. Deposit date: 2019-03-14 Release date: 2019-08-07 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.1 Å) Cite: De-Novo Design of Cereblon (CRBN) Effectors Guided by Natural Hydrolysis Products of Thalidomide Derivatives. J.Med.Chem., 62, 2019
6R1K	Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with compound 7c Descriptor: Cereblon isoform 4, PHOSPHATE ION, ZINC ION, ... Authors: Heim, C, Hartmann, M.D. Deposit date: 2019-03-14 Release date: 2019-08-07 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.94 Å) Cite: De-Novo Design of Cereblon (CRBN) Effectors Guided by Natural Hydrolysis Products of Thalidomide Derivatives. J.Med.Chem., 62, 2019
6R1W	Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with compound 16b Descriptor: (4-azanylcyclohexyl)methyl ~{N}-[(3~{S})-2,6-bis(oxidanylidene)piperidin-3-yl]carbamate, Cereblon isoform 4, PHOSPHATE ION, ... Authors: Heim, C, Hartmann, M.D. Deposit date: 2019-03-15 Release date: 2019-08-07 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.35 Å) Cite: De-Novo Design of Cereblon (CRBN) Effectors Guided by Natural Hydrolysis Products of Thalidomide Derivatives. J.Med.Chem., 62, 2019
6R1X	Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with compound 7a Descriptor: Cereblon isoform 4, ZINC ION, ~{N}-[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]-3-methyl-but-2-enamide Authors: Heim, C, Hartmann, M.D. Deposit date: 2019-03-15 Release date: 2019-08-07 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (1.8 Å) Cite: De-Novo Design of Cereblon (CRBN) Effectors Guided by Natural Hydrolysis Products of Thalidomide Derivatives. J.Med.Chem., 62, 2019
6R1C	Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with compound 12a Descriptor: 4-[[4-[[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]carbamoyloxymethyl]phenyl]methylamino]-4-oxidanylidene-butanoic acid, ASPARTIC ACID, CHLORIDE ION, ... Authors: Heim, C, Hartmann, M.D. Deposit date: 2019-03-14 Release date: 2019-08-07 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.5 Å) Cite: De-Novo Design of Cereblon (CRBN) Effectors Guided by Natural Hydrolysis Products of Thalidomide Derivatives. J.Med.Chem., 62, 2019
6F0Q	Crystal structure of Pizza6-AYW Descriptor: Pizza6-AYW Authors: Noguchi, H, De Zitter, E, Van Meervelt, L, Voet, A.R.D. Deposit date: 2017-11-20 Release date: 2018-03-21 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.3 Å) Cite: Design of tryptophan-containing mutants of the symmetrical Pizza protein for biophysical studies. Biochem. Biophys. Res. Commun., 497, 2018
1KVG	EPO-3 beta Hairpin Peptide Descriptor: Protein: EPO-3 Receptor Agonist Authors: Skelton, N.J, Russell, S, de Sauvage, F, Cochran, A.G. Deposit date: 2002-01-25 Release date: 2002-03-06 Last modified: 2022-02-23 Method: SOLUTION NMR Cite: Amino Acid Determinants of beta-Hairpin Conformation in Erythropoeitin Receptor Agonist Peptides Derived from a Phage Display Library J.Mol.Biol., 316, 2002
5SWK	Crystal structure of p53 epitope-scaffold based on a inhibitor of cysteine proteases in complex with human MDM2 Descriptor: CHLORIDE ION, De novo protein based on the inhibitor Amoebiasin-1, E3 ubiquitin-protein ligase Mdm2, ... Authors: Jimenez-Sandoval, P, Brieba, L.G. Deposit date: 2016-08-08 Release date: 2017-10-18 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.923 Å) Cite: Mimicking a p53-MDM2 interaction based on a stable immunoglobulin-like domain scaffold. Proteins, 86, 2018
7PWY	Structure of human dimeric ACMSD in complex with the inhibitor TES-1025 Descriptor: 2-[3-[(5-cyano-6-oxidanylidene-4-thiophen-2-yl-1H-pyrimidin-2-yl)sulfanylmethyl]phenyl]ethanoic acid, 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase, POTASSIUM ION, ... Authors: Cianci, M, Giacche, N, Carotti, A, Liscio, P, Amici, A, Cialabrini, L, De Franco, F, Pellicciari, R, Raffaelli, N. Deposit date: 2021-10-07 Release date: 2022-04-20 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural Basis of Human Dimeric alpha-Amino-beta-Carboxymuconate-epsilon-Semialdehyde Decarboxylase Inhibition With TES-1025. Front Mol Biosci, 9, 2022
1VL3	DESIGN OF NEW MIMOCHROMES WITH UNIQUE TOPOLOGY Descriptor: CO(III)-(DEUTEROPORPHYRIN IX), GLU-SER-GLN-LEU-HIS-SER-ASN-LYS-ARG Authors: Lombardi, A, Nastri, F, Marasco, D, Maglio, O, De Sanctis, G, Sinibaldi, F, Santucci, R, Coletta, M, Pavone, V. Deposit date: 2004-07-05 Release date: 2004-07-20 Last modified: 2024-10-09 Method: SOLUTION NMR Cite: Design of a New Mimochrome with Unique Topology. Chemistry, 9, 2003

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