7PWY
Structure of human dimeric ACMSD in complex with the inhibitor TES-1025
Summary for 7PWY
| Entry DOI | 10.2210/pdb7pwy/pdb |
| Descriptor | 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase, ZINC ION, 2-[3-[(5-cyano-6-oxidanylidene-4-thiophen-2-yl-1H-pyrimidin-2-yl)sulfanylmethyl]phenyl]ethanoic acid, ... (5 entities in total) |
| Functional Keywords | acmsd, de-novo nad+ synthesis, tes-1025, decarboxylase, lyase |
| Biological source | Homo sapiens (human) |
| Total number of polymer chains | 4 |
| Total formula weight | 153600.00 |
| Authors | Cianci, M.,Giacche, N.,Carotti, A.,Liscio, P.,Amici, A.,Cialabrini, L.,De Franco, F.,Pellicciari, R.,Raffaelli, N. (deposition date: 2021-10-07, release date: 2022-04-20, Last modification date: 2024-01-31) |
| Primary citation | Cianci, M.,Giacche, N.,Cialabrini, L.,Carotti, A.,Liscio, P.,Rosatelli, E.,De Franco, F.,Gasparrini, M.,Robertson, J.,Amici, A.,Raffaelli, N.,Pellicciari, R. Structural Basis of Human Dimeric alpha-Amino-beta-Carboxymuconate-epsilon-Semialdehyde Decarboxylase Inhibition With TES-1025. Front Mol Biosci, 9:834700-834700, 2022 Cited by PubMed Abstract: Human α-amino-β-carboxymuconate-ε-semialdehyde decarboxylase (ACMSD) stands at a branch point of the NAD synthesis pathway and plays an important role in maintaining NAD homeostasis. It has been recently identified as a novel therapeutic target for a wide range of diseases, including inflammatory, metabolic disorders, and aging. So far, in absence of potent and selective enzyme inhibitors, only a crystal structure of the complex of human dimeric ACMSD with pseudo-substrate dipicolinic acid has been resolved. In this study, we report the crystal structure of the complex of human dimeric ACMSD with TES-1025, the first nanomolar inhibitor of this target, which shows a binding conformation different from the previously published predicted binding mode obtained by docking experiments. The inhibitor has a value of 0.85 ± 0.22 nM and binds in the catalytic site, interacting with the Zn metal ion and with residues belonging to both chains of the dimer. The results provide new structural information about the mechanism of inhibition exerted by a novel class of compounds on the ACMSD enzyme, a novel therapeutic target for liver and kidney diseases. PubMed: 35463964DOI: 10.3389/fmolb.2022.834700 PDB entries with the same primary citation |
| Experimental method | X-RAY DIFFRACTION (2.5 Å) |
Structure validation
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