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5TY6
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BU of 5ty6 by Molmil
Crystal structure of the broadly neutralizing Influenza A antibody VRC 315 13-1b02 Fab.
Descriptor: GLYCEROL, VRC 315 13-1b02 Fab Heavy chain, VRC 315 13-1b02 Fab Light chain
Authors:Joyce, M.G, Andrews, S.F, Mascola, J.R, McDermott, A.B, Kwong, P.D.
Deposit date:2016-11-18
Release date:2017-10-25
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.361 Å)
Cite:Preferential induction of cross-group influenza A hemagglutinin stem-specific memory B cells after H7N9 immunization in humans.
Sci Immunol, 2, 2017
3V0A
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BU of 3v0a by Molmil
2.7 angstrom crystal structure of BoNT/Ai in complex with NTNHA
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, BoNT/A, CALCIUM ION, ...
Authors:Gu, S, Rumpel, S, Zhou, J, Strotmeier, J, Bigalke, H, Perry, K, Shoemaker, C.B, Rummel, A, Jin, R.
Deposit date:2011-12-07
Release date:2012-03-14
Method:X-RAY DIFFRACTION (2.703 Å)
Cite:Botulinum neurotoxin is shielded by NTNHA in an interlocked complex.
Science, 335, 2012
7U0Y
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BU of 7u0y by Molmil
Crystal structure of Pepper RNA aptamer in complex with HBC599 ligand and Fab BL3-6
Descriptor: 4-[(Z)-1-cyano-2-{6-[(2-hydroxyethyl)(methyl)amino]-1-benzothiophen-2-yl}ethenyl]benzonitrile, Fab BL3-6 heavy chain, Fab BL3-6 light chain, ...
Authors:Rees, H.C, Piccirilli, J.A.
Deposit date:2022-02-19
Release date:2022-08-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:Structural Basis for Fluorescence Activation by Pepper RNA.
Acs Chem.Biol., 17, 2022
7ORB
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BU of 7orb by Molmil
Crystal structure of the L452R mutant receptor binding domain of SARS-CoV-2 Spike glycoprotein in complex with COVOX-75 and COVOX-253 Fabs
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Zhou, D, Ren, J, Stuart, D.I.
Deposit date:2021-06-04
Release date:2021-07-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Reduced neutralization of SARS-CoV-2 B.1.617 by vaccine and convalescent serum.
Cell, 184, 2021
7OR9
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BU of 7or9 by Molmil
Crystal structure of the receptor binding domain of SARS-CoV-2 Spike glycoprotein in complex with COVOX-222 and COVOX-278 Fabs
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, COVOX-222 Fab heavy chain, ...
Authors:Zhou, D, Ren, J, Stuart, D.I.
Deposit date:2021-06-04
Release date:2021-07-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Reduced neutralization of SARS-CoV-2 B.1.617 by vaccine and convalescent serum.
Cell, 184, 2021
7ORA
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BU of 7ora by Molmil
Crystal structure of the T478K mutant receptor binding domain of SARS-CoV-2 Spike glycoprotein in complex with COVOX-45 and COVOX-253 Fabs
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, COVOX-253 Fab heavy chain, ...
Authors:Zhou, D, Ren, J, Stuart, D.I.
Deposit date:2021-06-04
Release date:2021-07-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Reduced neutralization of SARS-CoV-2 B.1.617 by vaccine and convalescent serum.
Cell, 184, 2021
7JKM
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BU of 7jkm by Molmil
REGN1 Human Fab in complex with anti-Kappa VHH domain
Descriptor: REGN1 Antibody Heavy Chain, REGN1 Antibody Light Chain, anti-Kappa VHH domain nanobody
Authors:Dennis, T.N, de la Cruz, M, Williams, J.C.
Deposit date:2020-07-28
Release date:2021-08-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Verification of a Fab binding nanobody for crystallization studies
To Be Published
5EII
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BU of 5eii by Molmil
Structural determination of an protein complex of a Fab with increased solubility
Descriptor: Fab Heavy Chain, Fab Light Chain, Histone chaperone ASF1
Authors:Bailey, L.J, Kossiakoff, A.A, Chaperone-Enabled Studies of Epigenetic Regulation Enzymes (CEBS)
Deposit date:2015-10-29
Release date:2016-11-09
Last modified:2019-12-18
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:Structural determination of an protein complex of a Fab with increased solubility
To Be Published
7KGV
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BU of 7kgv by Molmil
Crystal structure of sodium-coupled neutral amino acid transporter SLC38A9 in the N-terminal plugged form
Descriptor: Monoclonal antibody Fab heavy chain, Monoclonal antibody Fab light chain, Sodium-coupled neutral amino acid transporter 9
Authors:Lei, H, Mu, X, Hattne, J, Gonen, T.
Deposit date:2020-10-19
Release date:2020-12-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:A conformational change in the N terminus of SLC38A9 signals mTORC1 activation.
Structure, 29, 2021
2OBG
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BU of 2obg by Molmil
Crystal Structure of Monobody MBP-74/Maltose Binding Protein Fusion Complex
Descriptor: Maltose Binding periplasmic Protein and Monobody MBP-74 Fusion protein
Authors:Gilbreth, R.N, Tereshko, V, Koide, S.
Deposit date:2006-12-19
Release date:2007-03-27
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:High-affinity single-domain binding proteins with a binary-code interface.
Proc.Natl.Acad.Sci.Usa, 104, 2007
1F6A
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BU of 1f6a by Molmil
Structure of the human ige-fc bound to its high affinity receptor fc(epsilon)ri(alpha)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE, HIGH AFFINITY IMMUNOGLOBULIN EPSILON RECEPTOR ALPHA-SUBUNIT, ...
Authors:Garman, S.C, Wurzburg, B.A, Tarchevskaya, S.S, Kinet, J.P, Jardetzky, T.S.
Deposit date:2000-06-20
Release date:2000-07-20
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structure of the Fc fragment of human IgE bound to its high-affinity receptor Fc (epsilon) RI (alpha).
Nature, 406, 2000
4DK6
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BU of 4dk6 by Molmil
Structure of Editosome protein
Descriptor: RNA-editing complex protein MP81, single domain antibody VHH
Authors:Park, Y.-J, Hol, W.
Deposit date:2012-02-03
Release date:2012-07-04
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:The structure of the C-terminal domain of the largest editosome interaction protein and its role in promoting RNA binding by RNA-editing ligase L2.
Nucleic Acids Res., 40, 2012
8GHK
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BU of 8ghk by Molmil
CryoEM structure of Influenza A virus A/Melbourner/1/1946 (H1N1) hemagglutinin bound to GS10-X6-BE4 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GS10-X6-BE4 Fab Heavy chain, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2023-03-10
Release date:2024-06-26
Method:ELECTRON MICROSCOPY (3.47 Å)
Cite:Structural basis for the broad antigenicity of the computationally optimized influenza hemagglutinin X6.
Structure, 2024
7NEH
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BU of 7neh by Molmil
Crystal structure of the receptor binding domain of SARS-CoV-2 Spike glycoprotein in complex with COVOX-269 Fab
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ...
Authors:Zhou, D, Ren, J, Stuart, D.
Deposit date:2021-02-04
Release date:2021-03-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Reduced neutralization of SARS-CoV-2 B.1.1.7 variant by convalescent and vaccine sera.
Cell, 184, 2021
7WGT
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BU of 7wgt by Molmil
X-ray structure of thermostabilized Drosophila dopamine transporter with GABA transporter1-like substitutions in the binding site, in complex with NO711.
Descriptor: 1-(2-{[(diphenylmethylidene)amino]oxy}ethyl)-1,2,5,6-tetrahydropyridine-3-carboxylic acid, Antibody fragment (9D5) heavy chain, Antibody fragment (9D5) light chain, ...
Authors:Joseph, D, Penmatsa, A.
Deposit date:2021-12-28
Release date:2022-06-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural insights into GABA transport inhibition using an engineered neurotransmitter transporter.
Embo J., 41, 2022
7CVT
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BU of 7cvt by Molmil
Crystal structure of the C85A/L194A/H234C mutant CLC-ec1 with Fab fragment
Descriptor: CHLORIDE ION, H(+)/Cl(-) exchange transporter ClcA, antibody Fab fragment heavy chain, ...
Authors:Park, K, Mersch, K, Robertson, J, Lim, H.-H.
Deposit date:2020-08-27
Release date:2021-09-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Altering CLC stoichiometry by reducing non-polar side-chains at the dimerization interface.
J.Mol.Biol., 433, 2021
5NQX
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BU of 5nqx by Molmil
Structure of a fHbp(V1.1):PorA(P1.16) chimera. Fusion at fHbp position 294.
Descriptor: Factor H binding protein,Major outer membrane protein P.IA,Factor H binding protein
Authors:Johnson, S, Jongerius, I, Lea, S.M, Tang, C.M.
Deposit date:2017-04-21
Release date:2018-02-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.66 Å)
Cite:Structure-based design of chimeric antigens for multivalent protein vaccines.
Nat Commun, 9, 2018
5NQZ
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BU of 5nqz by Molmil
Structure of a fHbp(V1.1):PorA(P1.16) chimera. Fusion at fHbp position 309.
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Factor H binding protein,Major outer membrane protein P.IA,Factor H binding protein, ...
Authors:Johnson, S, Hollingshead, S, Lea, S.M, Tang, C.M.
Deposit date:2017-04-21
Release date:2018-02-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Structure-based design of chimeric antigens for multivalent protein vaccines.
Nat Commun, 9, 2018
7CVS
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BU of 7cvs by Molmil
Crystal structure of the C85A/L194A mutant CLC-ec1 with Fab fragment
Descriptor: CHLORIDE ION, H(+)/Cl(-) exchange transporter ClcA, antibody Fab fragment heavy chain, ...
Authors:Park, K, Mersch, K, Robertson, J, Lim, H.-H.
Deposit date:2020-08-27
Release date:2021-09-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Altering CLC stoichiometry by reducing non-polar side-chains at the dimerization interface.
J.Mol.Biol., 433, 2021
3SGE
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BU of 3sge by Molmil
Crystal structure of mAb 17.2 in complex with R13 peptide
Descriptor: CALCIUM ION, Heavy Chain, Light Chain, ...
Authors:Pizarro, J.C, Boulot, G, Hontebeyrie, M, Bentley, G.A.
Deposit date:2011-06-14
Release date:2011-11-09
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Crystal structure of the complex mAb 17.2 and the C-terminal region of Trypanosoma cruzi P2 Beta protein: implications in cross-reactivity
Plos Negl Trop Dis, 5, 2011
3C08
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BU of 3c08 by Molmil
Crystal structure the Fab fragment of matuzumab/EMD72000 (Fab72000)
Descriptor: Matuzumab Fab Heavy chain, Matuzumab Fab Light chain, SULFATE ION
Authors:Ferguson, K.M, Schmiedel, J, Knoechel, T.
Deposit date:2008-01-18
Release date:2008-04-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Matuzumab binding to EGFR prevents the conformational rearrangement required for dimerization.
Cancer Cell, 13, 2008
3QWQ
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BU of 3qwq by Molmil
Crystal structure of the extracellular domain of the epidermal growth factor receptor in complex with an adnectin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ADNECTIN, ...
Authors:Sheriff, S.
Deposit date:2011-02-28
Release date:2012-02-01
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structures of adnectin/protein complexes reveal an expanded binding footprint.
Structure, 20, 2012
3QWR
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BU of 3qwr by Molmil
Crystal structure of IL-23 in complex with an adnectin
Descriptor: ADNECTIN, Interleukin-12 subunit beta, Interleukin-23 subunit alpha, ...
Authors:Wei, A, Sheriff, S.
Deposit date:2011-02-28
Release date:2012-02-01
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Structures of adnectin/protein complexes reveal an expanded binding footprint.
Structure, 20, 2012
7K75
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BU of 7k75 by Molmil
Crystal structure of MAD2-6 IgA Fab in complex with PfCSP N-terminal peptide.
Descriptor: Heavy chain of MAD2-6 IgA Fab, Light chain of MAD2-6 IgA Fab, PfCSP N-terminal peptide P17
Authors:Pholcharee, T, Wilson, I.A.
Deposit date:2020-09-22
Release date:2021-06-23
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Functional human IgA targets a conserved site on malaria sporozoites.
Sci Transl Med, 13, 2021
7K76
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BU of 7k76 by Molmil
Crystal structure of MAD2-6 IgG Fab in complex with PfCSP N-terminal peptide.
Descriptor: Heavy chain of MAD2-6 IgG Fab, Light chain of MAD2-6 IgG Fab, PfCSP N-terminal peptide P17
Authors:Pholcharee, T, Wilson, I.A.
Deposit date:2020-09-22
Release date:2021-06-23
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Functional human IgA targets a conserved site on malaria sporozoites.
Sci Transl Med, 13, 2021

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