2OBG
Crystal Structure of Monobody MBP-74/Maltose Binding Protein Fusion Complex
Summary for 2OBG
| Entry DOI | 10.2210/pdb2obg/pdb |
| Descriptor | Maltose Binding periplasmic Protein and Monobody MBP-74 Fusion protein (2 entities in total) |
| Functional Keywords | domain swapping, binding protein, antibody mimic, binary interface, de novo protein, protein binding |
| Biological source | Escherichia coli, synthetic construct (,) |
| Cellular location | Periplasm: P0AEX9 |
| Total number of polymer chains | 1 |
| Total formula weight | 50543.74 |
| Authors | Gilbreth, R.N.,Tereshko, V.,Koide, S. (deposition date: 2006-12-19, release date: 2007-03-27, Last modification date: 2023-12-27) |
| Primary citation | Koide, A.,Gilbreth, R.N.,Esaki, K.,Tereshko, V.,Koide, S. High-affinity single-domain binding proteins with a binary-code interface. Proc.Natl.Acad.Sci.Usa, 104:6632-6637, 2007 Cited by PubMed Abstract: High degrees of sequence and conformation complexity found in natural protein interaction interfaces are generally considered essential for achieving tight and specific interactions. However, it has been demonstrated that specific antibodies can be built by using an interface with a binary code consisting of only Tyr and Ser. This surprising result might be attributed to yet undefined properties of the antibody scaffold that uniquely enhance its capacity for target binding. In this work we tested the generality of the binary-code interface by engineering binding proteins based on a single-domain scaffold. We show that Tyr/Ser binary-code interfaces consisting of only 15-20 positions within a fibronectin type III domain (FN3; 95 residues) are capable of producing specific binding proteins (termed "monobodies") with a low-nanomolar K(d). A 2.35-A x-ray crystal structure of a monobody in complex with its target, maltose-binding protein, and mutation analysis revealed dominant contributions of Tyr residues to binding as well as striking molecular mimicry of a maltose-binding protein substrate, beta-cyclodextrin, by the Tyr/Ser binary interface. This work suggests that an interaction interface with low chemical diversity but with significant conformational diversity is generally sufficient for tight and specific molecular recognition, providing fundamental insights into factors governing protein-protein interactions. PubMed: 17420456DOI: 10.1073/pnas.0700149104 PDB entries with the same primary citation |
| Experimental method | X-RAY DIFFRACTION (2.35 Å) |
Structure validation
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