Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6HXL
DownloadVisualize
BU of 6hxl by Molmil
Structure of the citryl-CoA lyase core module of human ATP citrate lyase in complex with citrate and CoASH (space group P21)
Descriptor: 1,2-ETHANEDIOL, ATP-citrate synthase, CITRATE ANION, ...
Authors:Verstraete, K, Verschueren, K.
Deposit date:2018-10-17
Release date:2019-04-10
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structure of ATP citrate lyase and the origin of citrate synthase in the Krebs cycle.
Nature, 568, 2019
6HXP
DownloadVisualize
BU of 6hxp by Molmil
Structure of citryl-CoA lyase from Hydrogenobacter thermophilus
Descriptor: COENZYME A, Citryl-CoA lyase, SULFATE ION
Authors:Verstraete, K, Verschueren, K.
Deposit date:2018-10-17
Release date:2019-04-10
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structure of ATP citrate lyase and the origin of citrate synthase in the Krebs cycle.
Nature, 568, 2019
6HXN
DownloadVisualize
BU of 6hxn by Molmil
Structure of the citryl-CoA lyase core module of Chlorobium limicola ATP citrate lyase (space group P3121)
Descriptor: ATP-citrate lyase alpha-subunit, COENZYME A, SULFATE ION
Authors:Verstraete, K, Verschueren, K.
Deposit date:2018-10-17
Release date:2019-04-10
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of ATP citrate lyase and the origin of citrate synthase in the Krebs cycle.
Nature, 568, 2019
8DV1
DownloadVisualize
BU of 8dv1 by Molmil
SARS-CoV-2 Wuhan-hu-1-Spike-RBD bound to linker variant of affinity matured ACE2 mimetic CVD432
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2,Immunoglobulin gamma-1 heavy chain fusion,Immunoglobulin gamma-1 heavy chain, Spike glycoprotein
Authors:QCRG Structural Biology Consortium, Remesh, S.G, Merz, G.E, Brilot, A.F, Chio, U, Verba, K.A.
Deposit date:2022-07-27
Release date:2022-08-31
Last modified:2023-03-15
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Computational pipeline provides mechanistic understanding of Omicron variant of concern neutralizing engineered ACE2 receptor traps.
Structure, 31, 2023
8DV2
DownloadVisualize
BU of 8dv2 by Molmil
SARS-CoV-2 Wuhan-hu-1-Spike-RBD bound to computationally engineered ACE2 mimetic CVD293
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2,Immunoglobulin gamma-1 heavy chain fusion, Spike glycoprotein
Authors:QCRG Structural Biology Consortium, Remesh, S.G, Merz, G.E, Brilot, A.F, Chio, U, Verba, K.A.
Deposit date:2022-07-27
Release date:2022-08-31
Last modified:2023-03-15
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Computational pipeline provides mechanistic understanding of Omicron variant of concern neutralizing engineered ACE2 receptor traps.
Structure, 31, 2023
7RBV
DownloadVisualize
BU of 7rbv by Molmil
SARS-CoV-2 Spike in complex with PVI.V6-14 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, PVI.V6-14 Fab heavy chain, ...
Authors:Altomare, C.G, Bajic, G.
Deposit date:2021-07-06
Release date:2022-05-04
Last modified:2022-07-06
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structure of a Vaccine-Induced, Germline-Encoded Human Antibody Defines a Neutralizing Epitope on the SARS-CoV-2 Spike N-Terminal Domain.
Mbio, 13, 2022
7RBU
DownloadVisualize
BU of 7rbu by Molmil
SARS-CoV-2 Spike in complex with PVI.V6-14 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, PVI.V6-14 Fab heavy chain, ...
Authors:Altomare, C.G, Bajic, G.
Deposit date:2021-07-06
Release date:2022-05-04
Last modified:2022-07-06
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structure of a Vaccine-Induced, Germline-Encoded Human Antibody Defines a Neutralizing Epitope on the SARS-CoV-2 Spike N-Terminal Domain.
Mbio, 13, 2022
6HXJ
DownloadVisualize
BU of 6hxj by Molmil
Structure of ATP citrate lyase from Chlorobium limicola in complex with citrate and coenzyme A.
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ATP-citrate lyase alpha-subunit, ATP-citrate lyase beta-subunit, ...
Authors:Verstraete, K, Verschueren, K.
Deposit date:2018-10-17
Release date:2019-04-10
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Structure of ATP citrate lyase and the origin of citrate synthase in the Krebs cycle.
Nature, 568, 2019
7KSB
DownloadVisualize
BU of 7ksb by Molmil
Crystal structure on Act c 10.0101
Descriptor: Non-specific lipid-transfer protein 1, SULFATE ION
Authors:Pote, S, O'Malley, A, Gawlicka-Chruszcz, A, Giangrieco, I, Ciardiello, M.A, Chruszcz, M.
Deposit date:2020-11-21
Release date:2021-01-20
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural Characterization of Act c 10.0101 and Pun g 1.0101-Allergens from the Non-Specific Lipid Transfer Protein Family.
Molecules, 26, 2021
6HXO
DownloadVisualize
BU of 6hxo by Molmil
Structure of the citryl-CoA lyase core module of Chlorobium limicola ATP citrate lyase (space group P21)
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ATP-citrate lyase alpha-subunit, CITRATE ANION
Authors:Verstraete, K, Verschueren, K.
Deposit date:2018-10-17
Release date:2019-04-10
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure of ATP citrate lyase and the origin of citrate synthase in the Krebs cycle.
Nature, 568, 2019
7PHU
DownloadVisualize
BU of 7phu by Molmil
PfRH5 bound to monoclonal antibody R5.015 and R5.016 Fab fragments
Descriptor: Monoclonal antibody R5.015 heavy chain, Monoclonal antibody R5.015 light chain, Monoclonal antibody R5.016 heavy chain, ...
Authors:Ragotte, R.J, Higgins, M.K.
Deposit date:2021-08-18
Release date:2022-02-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Heterotypic interactions drive antibody synergy against a malaria vaccine candidate.
Nat Commun, 13, 2022
7PI3
DownloadVisualize
BU of 7pi3 by Molmil
PfCyRPA bound to Fab fragments from monoclonal antibodies Cy.003, Cy.004 and Cy.007
Descriptor: CALCIUM ION, Cysteine-rich protective antigen, Monoclonal antibody Cy.003 heavy chain, ...
Authors:Ragotte, R.J, Higgins, M.K.
Deposit date:2021-08-19
Release date:2022-02-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.269 Å)
Cite:Heterotypic interactions drive antibody synergy against a malaria vaccine candidate.
Nat Commun, 13, 2022
7PHW
DownloadVisualize
BU of 7phw by Molmil
PfCyRPA bound to monoclonal antibody Cy.004 Fab fragment
Descriptor: CALCIUM ION, Cysteine-rich protective antigen, Monoclonal antibody Cy.004 heavy chain, ...
Authors:Ragotte, R.J, Higgins, M.K.
Deposit date:2021-08-18
Release date:2022-02-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.793 Å)
Cite:Heterotypic interactions drive antibody synergy against a malaria vaccine candidate.
Nat Commun, 13, 2022
7PI7
DownloadVisualize
BU of 7pi7 by Molmil
PfCyRPA bound to monoclonal antibody Cy.002 Fab fragment
Descriptor: Cysteine-rich protective antigen, Monoclonal antibody Cy.002 heavy chain, Monoclonal antibody Cy.002 light chain
Authors:Ragotte, R.J, Higgins, M.K.
Deposit date:2021-08-19
Release date:2022-02-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Heterotypic interactions drive antibody synergy against a malaria vaccine candidate.
Nat Commun, 13, 2022
7PHV
DownloadVisualize
BU of 7phv by Molmil
PfCyRPA bound to monoclonal antibody Cy.007 Fab fragment
Descriptor: AMMONIUM ION, Cysteine-rich protective antigen, Monoclonal antibody Cy.007 heavy chain, ...
Authors:Ragotte, R.J, Higgins, M.K.
Deposit date:2021-08-18
Release date:2022-02-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.091 Å)
Cite:Heterotypic interactions drive antibody synergy against a malaria vaccine candidate.
Nat Commun, 13, 2022
7PI2
DownloadVisualize
BU of 7pi2 by Molmil
PfCyRPA bound to monoclonal antibody Cy.003 Fab fragment
Descriptor: Cysteine-rich protective antigen, Monoclonal antibody Cy.003 heavy chain, Monoclonal antibody Cy.003 light chain
Authors:Ragotte, R.J, Higgins, M.K.
Deposit date:2021-08-19
Release date:2022-02-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.14 Å)
Cite:Heterotypic interactions drive antibody synergy against a malaria vaccine candidate.
Nat Commun, 13, 2022
8HDU
DownloadVisualize
BU of 8hdu by Molmil
De novo design cavitated protein without predefined topology
Descriptor: De novo design cavitated protein
Authors:Hu, X, Xu, Y.
Deposit date:2022-11-06
Release date:2023-01-18
Last modified:2024-04-24
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:De novo design of cavity-containing proteins with a backbone-centered neural network energy function.
Structure, 32, 2024
8HDV
DownloadVisualize
BU of 8hdv by Molmil
De novo design cavitated protein without predefined topology
Descriptor: De novo design cavitated protein
Authors:Hu, X, Xu, Y.
Deposit date:2022-11-06
Release date:2023-01-18
Last modified:2024-04-24
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:De novo design of cavity-containing proteins with a backbone-centered neural network energy function.
Structure, 32, 2024
5AP9
DownloadVisualize
BU of 5ap9 by Molmil
Controlled lid-opening in Thermomyces lanuginosus lipase - a switch for activity and binding
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Skjold-Joergensen, J, Vind, J, Moroz, O.V, Blagova, E.V, Bhatia, V.K, Svendsen, A, Wilson, K.S, Bjerrum, M.J.
Deposit date:2015-09-15
Release date:2016-09-28
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Controlled lid-opening in Thermomyces lanuginosus lipase- An engineered switch for studying lipase function.
Biochim. Biophys. Acta, 1865, 2017
6KSH
DownloadVisualize
BU of 6ksh by Molmil
Crystal structure of pyruvate kinase (PYK) from Plasmodium falciparum in complex with oxalate and ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, OXALATE ION, ...
Authors:Zhong, W, Cai, Q, Li, K, Lescar, J, Dedon, P.C.
Deposit date:2019-08-23
Release date:2020-08-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Pyruvate kinase from Plasmodium falciparum: Structural and kinetic insights into the allosteric mechanism.
Biochem.Biophys.Res.Commun., 532, 2020
7AA5
DownloadVisualize
BU of 7aa5 by Molmil
Human TRPV4 structure in presence of 4a-PDD
Descriptor: CALCIUM ION, Transient receptor potential cation channel subfamily V member 4,Green fluorescent protein
Authors:Botte, M, Ulrich, A.K.G, Adaixo, R, Gnutt, D, Brockmann, A, Bucher, D, Chami, M, Bocquet, M, Ebbinghaus-Kintscher, U, Puetter, V, Becker, A, Egner, U, Stahlberg, H, Hennig, M, Holton, S.J.
Deposit date:2020-09-03
Release date:2021-08-18
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (4.18 Å)
Cite:Cryo-EM structural studies of the agonist complexed human TRPV4 ion-channel reveals novel structural rearrangements resulting in an open-conformation
To Be Published
7PTV
DownloadVisualize
BU of 7ptv by Molmil
Structure of the Mimivirus genomic fibre asymmetric unit
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Putative glucose-methanol-choline oxidoreductase protein
Authors:Villalta, A, Schmitt, A, Estrozi, L.F, Quemin, E.R.J, Alempic, J.M, Lartigue, A, Prazak, V, Belmudes, L, Vasishtan, D, Colmant, A.M.G, Honore, F.A, Coute, Y, Grunewald, K, Abergel, C.
Deposit date:2021-09-27
Release date:2022-08-10
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:The giant mimivirus 1.2 Mb genome is elegantly organized into a 30 nm diameter helical protein shield.
Elife, 11, 2022
5CBX
DownloadVisualize
BU of 5cbx by Molmil
AncGR DNA Binding Domain - (+)GRE Complex
Descriptor: AncGR DNA Binding Domain, DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*GP*AP*GP*TP*GP*TP*TP*CP*TP*G)-3'), DNA (5'-D(*TP*CP*AP*GP*AP*AP*CP*AP*CP*TP*CP*TP*GP*TP*TP*CP*TP*G)-3'), ...
Authors:Hudson, W.H, Ortlund, E.A.
Deposit date:2015-07-01
Release date:2015-12-23
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Distal substitutions drive divergent DNA specificity among paralogous transcription factors through subdivision of conformational space.
Proc.Natl.Acad.Sci.USA, 113, 2016
5CC1
DownloadVisualize
BU of 5cc1 by Molmil
S425G Glucocorticoid receptor DNA binding domain - (+)GRE complex
Descriptor: DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*GP*AP*GP*TP*GP*TP*TP*CP*TP*G)-3'), DNA (5'-D(*TP*CP*AP*GP*AP*AP*CP*AP*CP*TP*CP*TP*GP*TP*TP*CP*TP*G)-3'), Glucocorticoid receptor, ...
Authors:Hudson, W.H, Weikum, E.A, Ortlund, E.A.
Deposit date:2015-07-01
Release date:2015-12-23
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.302 Å)
Cite:Distal substitutions drive divergent DNA specificity among paralogous transcription factors through subdivision of conformational space.
Proc.Natl.Acad.Sci.USA, 113, 2016
8EKD
DownloadVisualize
BU of 8ekd by Molmil
Cryo-EM map of SARS-CoV-2 Omicron BA.2 spike in complex with 2130-1-0114-112
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fab LLNL-199 HC, Fab LLNL-199 LC, ...
Authors:Binshtein, E, Crowe, J.E.
Deposit date:2022-09-20
Release date:2024-02-21
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Computationally restoring the potency of a clinical antibody against Omicron.
Nature, 629, 2024

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon