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6AAU	Solution Structure for m62A helix 45 in 3' end of 12S rRNA Descriptor: RNA (24-mer) Authors: Liu, X, Wu, P. Deposit date: 2018-07-19 Release date: 2019-06-05 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structural insights into dimethylation of 12S rRNA by TFB1M: indispensable role in translation of mitochondrial genes and mitochondrial function. Nucleic Acids Res., 47, 2019
3QSU	Structure of Staphylococcus aureus Hfq in complex with A7 RNA Descriptor: RNA (5'-R(P*AP*AP*AP*AP*AP*AP*A)-3'), RNA chaperone Hfq, ZINC ION Authors: Brennan, R, Horstmann, N, Link, T.M. Deposit date: 2011-02-21 Release date: 2012-09-12 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural mechanism of Staphylococcus aureus Hfq binding to an RNA A-tract. Nucleic Acids Res., 40, 2012
6AAS	Solution Structure for helix 45 in 3' end of 12S rRNA Descriptor: RNA (28-MER) Authors: Liu, X, Wu, P. Deposit date: 2018-07-19 Release date: 2019-06-05 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structural insights into dimethylation of 12S rRNA by TFB1M: indispensable role in translation of mitochondrial genes and mitochondrial function. Nucleic Acids Res., 47, 2019
7AE1	Cryo-EM structure of human RNA Polymerase III elongation complex 1 Descriptor: DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, DNA-directed RNA polymerase III subunit RPC2, ... Authors: Girbig, M, Misiaszek, A.D, Vorlaender, M.K, Mueller, C.W. Deposit date: 2020-09-17 Release date: 2021-02-03 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Cryo-EM structures of human RNA polymerase III in its unbound and transcribing states. Nat.Struct.Mol.Biol., 28, 2021
7AE3	Cryo-EM structure of human RNA Polymerase III elongation complex 3 Descriptor: DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, DNA-directed RNA polymerase III subunit RPC2, ... Authors: Girbig, M, Misiaszek, A.D, Vorlaender, M.K, Mueller, C.W. Deposit date: 2020-09-17 Release date: 2021-02-03 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Cryo-EM structures of human RNA polymerase III in its unbound and transcribing states. Nat.Struct.Mol.Biol., 28, 2021
7AEA	Cryo-EM structure of human RNA Polymerase III elongation complex 2 Descriptor: DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, DNA-directed RNA polymerase III subunit RPC2, ... Authors: Girbig, M, Misiaszek, A.D, Vorlaender, M.K, Mueller, C.W. Deposit date: 2020-09-17 Release date: 2021-02-03 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Cryo-EM structures of human RNA polymerase III in its unbound and transcribing states. Nat.Struct.Mol.Biol., 28, 2021
7AOE	Schizosaccharomyces pombe RNA polymerase I (elongation complex) Descriptor: DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit rpa1, DNA-directed RNA polymerase I subunit rpa14, ... Authors: Heiss, F, Daiss, J, Becker, P, Engel, C. Deposit date: 2020-10-14 Release date: 2021-02-24 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Conserved strategies of RNA polymerase I hibernation and activation. Nat Commun, 12, 2021
8BCD	Human Brr2 Helicase Region in complex with C-tail deleted Jab1 and compound 50 Descriptor: Pre-mRNA-processing-splicing factor 8, U5 small nuclear ribonucleoprotein 200 kDa helicase, phenylsulfonylcarbamodithioic acid Authors: Vester, K, Loll, B, Wahl, M.C. Deposit date: 2022-10-15 Release date: 2023-03-08 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Conformation-dependent ligand hot spots in the spliceosomal RNA helicase BRR2. Acta Crystallogr D Struct Biol, 79, 2023
4JAK	Crystal structure of tRNA (Um34/Cm34) methyltransferase TrmL from Escherichia coli Descriptor: tRNA (cytidine(34)-2'-O)-methyltransferase Authors: Liu, R.J, Zhou, M, Wang, E.D. Deposit date: 2013-02-18 Release date: 2013-07-31 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2 Å) Cite: The tRNA recognition mechanism of the minimalist SPOUT methyltransferase, TrmL Nucleic Acids Res., 41, 2013
3P1Y	Crystal structure of the chimeric Archaeoglobus fulgidus RNA splicing endonuclease with the broadest substrate specificity Descriptor: tRNA-splicing endonuclease Authors: Hirata, A. Deposit date: 2010-10-01 Release date: 2011-08-10 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Cleavage of intron from the standard or non-standard position of the precursor tRNA by the splicing endonuclease of Aeropyrum pernix, a hyper-thermophilic Crenarchaeon, involves a novel RNA recognition site in the Crenarchaea specific loop Nucleic Acids Res., 39, 2011
2LBS	Solution structure of double-stranded RNA binding domain of S. cerevisiae RNase III (Rnt1p) in complex with AAGU tetraloop hairpin Descriptor: RNA (32-MER), Ribonuclease 3 Authors: Wang, Z, Hartman, E, Roy, K, Chanfreau, G, Feigon, J. Deposit date: 2011-04-06 Release date: 2011-08-31 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structure of a Yeast RNase III dsRBD Complex with a Noncanonical RNA Substrate Provides New Insights into Binding Specificity of dsRBDs. Structure, 19, 2011
361D	CRYSTAL STRUCTURE OF DOMAIN E OF THERMUS FLAVUS 5S RRNA: A HELICAL RNA-STRUCTURE INCLUDING A TETRALOOP Descriptor: RNA (5'-R(*CP*UP*GP*GP*GP*CP*GP*GP*GP*CP*GP*AP*CP*CP*GP*CP*C P*UP*GP*G)-3') Authors: Perbandt, M, Nolte, A, Lorenz, S, Erdmann, V.A, Betzel, C. Deposit date: 1997-11-10 Release date: 1998-07-01 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (3 Å) Cite: Crystal structure of domain E of Thermus flavus 5S rRNA: a helical RNA structure including a hairpin loop. FEBS Lett., 429, 1998
5AY4	Crystal structure of RNA duplex containing C-C base pairs obtained in the presence of Hg(II) Descriptor: RNA (5'-R(*GP*GP*AP*CP*UP*(CBR)P*GP*AP*CP*UP*CP*C)-3'), SODIUM ION Authors: Kondo, J, Tada, Y, Dairaku, T, Saneyoshi, H, Okamoto, I, Tanaka, Y, Ono, A. Deposit date: 2015-08-06 Release date: 2015-10-21 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.7 Å) Cite: High-Resolution Crystal Structure of a Silver(I)-RNA Hybrid Duplex Containing Watson-Crick-like CSilver(I)C Metallo-Base Pairs Angew.Chem.Int.Ed.Engl., 54, 2015
2K7E	NMR structure of the human tRNALys3 bound to the HIV genome Loop I Descriptor: RNA (5'-R(*CP*UP*(SUR)P*UP*UP*AP*AP*(PSU)P*CP*UP*GP*C)-3'), RNA (5'-R(*GP*CP*GP*GP*UP*GP*UP*AP*AP*AP*AP*G)-3') Authors: Bilbille, Y, Vendeix, F.P.A, Guenther, R, Malkiewicz, A, Ariza, X, Vilarrasa, J, Agris, P. Deposit date: 2008-08-09 Release date: 2008-10-07 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: The structure of the human tRNALys3 anticodon bound to the HIV genome is stabilized by modified nucleosides and adjacent mismatch base pairs. Nucleic Acids Res., 37, 2009
5AY2	Crystal structure of RNA duplex containing C-Ag(I)-C base pairs Descriptor: RNA (5'-R(*GP*GP*AP*CP*UP*(CBR)P*GP*AP*CP*UP*CP*C)-3'), SILVER ION Authors: Kondo, J, Tada, Y, Dairaku, T, Saneyoshi, H, Okamoto, I, Tanaka, Y, Ono, A. Deposit date: 2015-08-06 Release date: 2015-10-21 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.3 Å) Cite: High-Resolution Crystal Structure of a Silver(I)-RNA Hybrid Duplex Containing Watson-Crick-like CSilver(I)C Metallo-Base Pairs Angew.Chem.Int.Ed.Engl., 54, 2015
5AY3	Crystal structure of RNA duplex containing C-C base pairs Descriptor: RNA (5'-R(*GP*GP*AP*CP*UP*(CBR)P*GP*A*CP*UP*CP*C)-3') Authors: Kondo, J, Tada, Y, Dairaku, T, Saneyoshi, H, Okamoto, I, Tanaka, Y, Ono, A. Deposit date: 2015-08-06 Release date: 2015-10-21 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.2 Å) Cite: High-Resolution Crystal Structure of a Silver(I)-RNA Hybrid Duplex Containing Watson-Crick-like CSilver(I)C Metallo-Base Pairs Angew.Chem.Int.Ed.Engl., 54, 2015
2LDT	The 912-888 alternate conformation for helix 27 of E.coli 16S rRNA Descriptor: RNA (31-MER) Authors: Spano, M.N, Walter, N.G. Deposit date: 2011-06-02 Release date: 2011-09-07 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Solution structure of an alternate conformation of helix27 from Escherichia coli16S rRNA. Biopolymers, 95, 2011
6HMI	Solution structure of the RNA duplex formed by the 5'-end of U1snRNA and the 5'-splice site of SMN2 exon7 Descriptor: RNA (5'-R(*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3'), RNA (5'-R(*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3') Authors: Campagne, S, Allain, F.H. Deposit date: 2018-09-12 Release date: 2019-08-14 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: Structural basis of a small molecule targeting RNA for a specific splicing correction. Nat.Chem.Biol., 15, 2019
1R9S	RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MATCHED NUCLEOTIDE Descriptor: DNA strand, DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerase II 14.2 kDa polypeptide, ... Authors: Westover, K.D, Bushnell, D.A, Kornberg, R.D. Deposit date: 2003-10-30 Release date: 2004-11-16 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (4.25 Å) Cite: Structural basis of transcription: nucleotide selection by rotation in the RNA polymerase II active center. Cell(Cambridge,Mass.), 119, 2004
353D	CRYSTAL STRUCTURE OF DOMAIN A OF THERMUS FLAVUS 5S RRNA AND THE CONTRIBUTION OF WATER MOLECULES TO ITS STRUCTURE Descriptor: RNA (5'-R(*AP*UP*CP*CP*CP*CP*CP*GP*UP*GP*CP*C)-3'), RNA (5'-R(*GP*GP*UP*GP*CP*GP*GP*GP*GP*GP*AP*U)-3') Authors: Betzel, C, Lorenz, S, Furste, J.P, Bald, R, Zhang, M, Schneider, T.R, Wilson, K.S, Erdmann, V.A. Deposit date: 1997-09-29 Release date: 1997-11-10 Last modified: 2023-08-02 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal structure of domain A of Thermus flavus 5S rRNA and the contribution of water molecules to its structure. FEBS Lett., 351, 1994
1R9T	RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDE Descriptor: ADENOSINE-5'-TRIPHOSPHATE, DNA nontemplate strand, DNA template strand, ... Authors: Westover, K.D, Bushnell, D.A, Kornberg, R.D. Deposit date: 2003-10-30 Release date: 2004-11-16 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Structural basis of transcription: nucleotide selection by rotation in the RNA polymerase II active center. Cell(Cambridge,Mass.), 119, 2004
1SFO	RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX Descriptor: DNA STRAND, DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerase II 14.2 kDa polypeptide, ... Authors: Westover, K.D, Bushnell, D.A, Kornberg, R.D. Deposit date: 2004-02-20 Release date: 2004-03-02 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (3.61 Å) Cite: Structural Basis of Transcription: Separation of RNA from DNA by RNA Polymerase II Science, 303, 2004
1YTU	Structural basis for 5'-end-specific recognition of the guide RNA strand by the A. fulgidus PIWI protein Descriptor: 5'-R(P*AP*GP*AP*CP*AP*G)-3', 5'-R(P*UP*GP*UP*C)-3', MAGNESIUM ION, ... Authors: Ma, J.B, Yuan, Y.R, Meister, G, Pei, Y, Tuschl, T, Patel, D.J. Deposit date: 2005-02-11 Release date: 2005-04-05 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural basis for 5'-end-specific recognition of guide RNA by the A. fulgidus Piwi protein. Nature, 434, 2005
2B6G	RNA recognition by the Vts1 SAM domain Descriptor: 5'-R(*GP*GP*AP*GP*GP*CP*UP*CP*UP*GP*GP*CP*AP*GP*CP*UP*UP*UP*C)-3', Vts1p Authors: Donaldson, L.W, Johnson, P.E. Deposit date: 2005-10-01 Release date: 2006-01-24 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: RNA recognition by the Vts1p SAM domain Nat.Struct.Mol.Biol., 13, 2006
2ZZN	The complex structure of aTrm5 and tRNACys Descriptor: MAGNESIUM ION, RNA (71-MER), S-ADENOSYLMETHIONINE, ... Authors: Goto-Ito, S, Ito, T, Yokoyama, S. Deposit date: 2009-02-19 Release date: 2009-09-15 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.95 Å) Cite: Tertiary structure checkpoint at anticodon loop modification in tRNA functional maturation. Nat.Struct.Mol.Biol., 16, 2009

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