PDB: 82129 resultsInfo pagesStatus searchChemie searchBIRD

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8IPK	The structure of human mitochondrial methyltransferase METTL15 with SAM Descriptor: 12S rRNA N4-methylcytidine (m4C) methyltransferase, GLYCEROL, S-ADENOSYLMETHIONINE Authors: Lv, M.Q, Zhou, W.W. Deposit date: 2023-03-14 Release date: 2024-01-03 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural insights into the specific recognition of mitochondrial ribosome-binding factor hsRBFA and 12 S rRNA by methyltransferase METTL15. Cell Discov, 10, 2024
8IPC	The recombinant NZ-1 Fab complexed with the PDZ tandem fragment of A. aeolicus S2P homolog with the PA14 tag inserted between the residues 181 and 184 Descriptor: Putative zinc metalloprotease aq_1964, The recombinantly-expressed heavy chain of the monoclonal antibody NZ-1, The recombinantly-expressed light chain of the monoclonal antibody NZ-1 Authors: Adachi, Y, Nogi, T. Deposit date: 2023-03-14 Release date: 2024-01-31 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Recombinant production of antibody antigen-binding fragments with an N-terminal human growth hormone tag in mammalian cells. Protein Expr.Purif., 208-209, 2023
8IPB	Wheat 80S ribosome pausing on AUG-Stop with cycloheximide Descriptor: 18S ribosomal RNA, 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione, 40S ribosomal protein eL8, ... Authors: Yokoyama, T, Tanaka, M, Saito, H, Nishimoto, M, Tsuda, K, Sotta, N, Shigematsu, H, Shirouzu, M, Iwasaki, S, Ito, T, Fujiwara, T. Deposit date: 2023-03-14 Release date: 2024-02-21 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Boric acid intercepts 80S ribosome migration from AUG-stop by stabilizing eRF1. Nat.Chem.Biol., 20, 2024
8IPA	Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide Descriptor: 18S ribosomal RNA, 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione, 40S ribosomal protein eL8, ... Authors: Yokoyama, T, Tanaka, M, Saito, H, Nishimoto, M, Tsuda, K, Sotta, N, Shigematsu, H, Shirouzu, M, Iwasaki, S, Ito, T, Fujiwara, T. Deposit date: 2023-03-14 Release date: 2024-02-21 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Boric acid intercepts 80S ribosome migration from AUG-stop by stabilizing eRF1. Nat.Chem.Biol., 20, 2024
8IP9	Wheat 40S ribosome in complex with a tRNAi Descriptor: 18S ribosomal RNA, 40S ribosomal protein S23, 40S ribosomal protein eS1, ... Authors: Yokoyama, T, Tanaka, M, Saito, H, Nishimoto, M, Tsuda, K, Sotta, N, Shigematsu, H, Shirouzu, M, Iwasaki, S, Ito, T, Fujiwara, T. Deposit date: 2023-03-14 Release date: 2024-02-21 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (3 Å) Cite: Boric acid intercepts 80S ribosome migration from AUG-stop by stabilizing eRF1. Nat.Chem.Biol., 20, 2024
8IP8	Wheat 80S ribosome stalled on AUG-Stop boron dependently Descriptor: 18S ribosomal RNA, 40S ribosomal protein eL8, 40S ribosomal protein eS1, ... Authors: Yokoyama, T, Tanaka, M, Saito, H, Nishimoto, M, Tsuda, K, Sotta, N, Shigematsu, H, Shirouzu, M, Iwasaki, S, Ito, T, Fujiwara, T. Deposit date: 2023-03-14 Release date: 2024-02-21 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Boric acid intercepts 80S ribosome migration from AUG-stop by stabilizing eRF1. Nat.Chem.Biol., 20, 2024
8IP2	Escherichia coli OpgG mutant-D361N with beta-1,2-glucan Descriptor: Glucans biosynthesis protein G, beta-D-glucopyranose-(1-2)-beta-D-glucopyranose-(1-2)-beta-D-glucopyranose-(1-2)-beta-D-glucopyranose-(1-2)-beta-D-glucopyranose-(1-2)-beta-D-glucopyranose-(1-2)-beta-D-glucopyranose-(1-2)-beta-D-glucopyranose-(1-2)-beta-D-glucopyranose-(1-2)-beta-D-glucopyranose-(1-2)-beta-D-glucopyranose-(1-2)-beta-D-glucopyranose-(1-2)-beta-D-glucopyranose-(1-2)-beta-D-glucopyranose-(1-2)-beta-D-glucopyranose-(1-2)-beta-D-glucopyranose Authors: Motouchi, S, Nakajima, M. Deposit date: 2023-03-13 Release date: 2024-03-13 Last modified: 2024-07-10 Method: X-RAY DIFFRACTION (1.81 Å) Cite: Identification of enzymatic functions of osmo-regulated periplasmic glucan biosynthesis proteins from Escherichia coli reveals a novel glycoside hydrolase family Commun Biol, 6, 2023
8IP1	Escherichia coli OpgD mutant-D388N with beta-1,2-glucan Descriptor: DI(HYDROXYETHYL)ETHER, Glucans biosynthesis protein D, TRIETHYLENE GLYCOL, ... Authors: Motouchi, S, Nakajima, M. Deposit date: 2023-03-13 Release date: 2024-03-13 Last modified: 2024-07-10 Method: X-RAY DIFFRACTION (2.06 Å) Cite: Identification of enzymatic functions of osmo-regulated periplasmic glucan biosynthesis proteins from Escherichia coli reveals a novel glycoside hydrolase family Commun Biol, 6, 2023
8IOZ	Crystal structure of transaminase Descriptor: Branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase Authors: Li, Q, Zhu, Y.M, Gao, J, Wei, H.L, Han, X, Liu, W.D, Sun, Y.X. Deposit date: 2023-03-13 Release date: 2024-01-24 Method: X-RAY DIFFRACTION (2.33 Å) Cite: structure of aminotransferase To Be Published
8IOX	Escherichia coli OpgD mutant-D388N Descriptor: Glucans biosynthesis protein D, alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose Authors: Motouchi, S, Nakajima, M. Deposit date: 2023-03-13 Release date: 2024-03-13 Last modified: 2024-07-10 Method: X-RAY DIFFRACTION (2.95 Å) Cite: Identification of enzymatic functions of osmo-regulated periplasmic glucan biosynthesis proteins from Escherichia coli reveals a novel glycoside hydrolase family Commun Biol, 6, 2023
8IOW	Cryo-EM structure of the sarilumab Fab/IL-6R complex Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of Sarilumab Fab, Interleukin-6 receptor subunit alpha, ... Authors: She, J, Chen, L, Wang, M.X. Deposit date: 2023-03-13 Release date: 2024-03-20 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Cryo-EM structure of the sarilumab Fab/IL-6R complex To Be Published
8IOV	Structure of SARS-CoV-2 XBB.1 spike RBD in complex with ACE2 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ... Authors: Anraku, Y, Kita, S, Yajima, H, Sasaki, J, Sasaki-Tabata, K, Maenaka, K, Hashiguchi, T. Deposit date: 2023-03-13 Release date: 2023-05-24 Last modified: 2023-07-19 Method: ELECTRON MICROSCOPY (3.29 Å) Cite: Virological characteristics of the SARS-CoV-2 XBB variant derived from recombination of two Omicron subvariants. Nat Commun, 14, 2023
8IOU	Structure of SARS-CoV-2 XBB.1 spike glycoprotein in complex with ACE2 (1-up state) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ... Authors: Anraku, Y, Kita, S, Yajima, H, Sasaki, J, Sasaki-Tabata, K, Maenaka, K, Hashiguchi, T. Deposit date: 2023-03-13 Release date: 2023-05-24 Last modified: 2023-07-19 Method: ELECTRON MICROSCOPY (3.18 Å) Cite: Virological characteristics of the SARS-CoV-2 XBB variant derived from recombination of two Omicron subvariants. Nat Commun, 14, 2023
8IOT	Structure of the SARS-CoV-2 XBB.1 spike glycoprotein (closed-2 state) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein Authors: Anraku, Y, Kita, S, Yajima, H, Sasaki, J, Sasaki-Tabata, K, Maenaka, K, Hashiguchi, T. Deposit date: 2023-03-13 Release date: 2023-05-24 Last modified: 2023-07-19 Method: ELECTRON MICROSCOPY (2.51 Å) Cite: Virological characteristics of the SARS-CoV-2 XBB variant derived from recombination of two Omicron subvariants. Nat Commun, 14, 2023
8IOS	Structure of the SARS-CoV-2 XBB.1 spike glycoprotein (closed-1 state) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein Authors: Anraku, Y, Kita, S, Yajima, H, Sasaki, J, Sasaki-Tabata, K, Maenaka, K, Hashiguchi, T. Deposit date: 2023-03-13 Release date: 2023-05-24 Last modified: 2023-07-19 Method: ELECTRON MICROSCOPY (2.5 Å) Cite: Virological characteristics of the SARS-CoV-2 XBB variant derived from recombination of two Omicron subvariants. Nat Commun, 14, 2023
8IOM	Crystal structure of the carboxy-terminal channel-forming domain of Colicin Ib Descriptor: Colicin 1B Authors: Yang, J, Hu, N.J. Deposit date: 2023-03-12 Release date: 2023-04-05 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (3 Å) Cite: Structure of colicin Ib Channel domain at 3.0 Angstroms resolution To Be Published
8IOJ	The Rubisco assembly intermidiate of Rubisco large subunit (RbcL) and Arabidopsis thaliana Rubisco accumulation factor 1 (AtRaf1) Descriptor: Ribulose bisphosphate carboxylase large chain, Rubisco accumulation factor 1.2, chloroplastic Authors: Wang, R, Song, H, Zhang, W, Wang, N, Zhang, S, Shao, R. Deposit date: 2023-03-11 Release date: 2023-11-01 Last modified: 2023-12-20 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Structural insights into the functions of Raf1 and Bsd2 in hexadecameric Rubisco assembly. Mol Plant, 16, 2023
8IOI	Crystal Structure of PadR- family transcriptional regulator Rv1176c from Mycobacterium tuberculosis H37Rv. Descriptor: CHLORIDE ION, GLYCEROL, HEXAETHYLENE GLYCOL, ... Authors: Yadav, V, Zohib, M, Pal, R.K, Biswal, B.K, Arora, A. Deposit date: 2023-03-11 Release date: 2024-03-13 Method: X-RAY DIFFRACTION (2.94 Å) Cite: Structural and biophysical characterization of PadR family protein Rv1176c of Mycobacterium tuberculosis H37Rv. Int.J.Biol.Macromol., 263, 2024
8IOF	Crystal structure of N-methyl-Cis-4-hydroxy-D-proline dehydratase in Clostridium sp. FS41 Descriptor: (2R,4R)-1-methyl-4-hydroxyl-pyrrolidine-2-carboxylic acid, Benzylsuccinate synthase alpha subunit Authors: Jiang, L, Zhang, Y. Deposit date: 2023-03-11 Release date: 2024-03-27 Method: X-RAY DIFFRACTION (2.33 Å) Cite: Crystal structure of N-methyl-Cis-4-hydroxy-D-proline dehydratase in Clostridium sp. FS41 To Be Published
8IOD	Cryo-EM structure of the PG-901-bound human melanocortin receptor 5 (MC5R)-Gs complex Descriptor: CALCIUM ION, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1,HiBiT, ... Authors: Feng, W.B, Zhou, Q.T, Chen, X.Y, Dai, A.T, Cai, X.Q, Liu, X, Zhao, F.H, Chen, Y, Ye, C.Y, Xu, Y.N, Cong, Z.T, Li, H, Lin, S, Yang, D.H, Wang, M.W. Deposit date: 2023-03-10 Release date: 2023-09-20 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (2.59 Å) Cite: Structural insights into ligand recognition and subtype selectivity of the human melanocortin-3 and melanocortin-5 receptors. Cell Discov, 9, 2023
8IOC	Cryo-EM structure of the gamma-MSH-bound human melanocortin receptor 3 (MC3R)-Gs complex Descriptor: CALCIUM ION, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1,HiBiT, ... Authors: Feng, W.B, Zhou, Q.T, Chen, X.Y, Dai, A.T, Cai, X.Q, Liu, X, Zhao, F.H, Chen, Y, Ye, C.Y, Xu, Y.N, Cong, Z.T, Li, H, Lin, S. Deposit date: 2023-03-10 Release date: 2023-09-20 Method: ELECTRON MICROSCOPY (2.86 Å) Cite: Structural insights into ligand recognition and subtype selectivity of the human melanocortin-3 and melanocortin-5 receptors. Cell Discov, 9, 2023
8IO2	The Rubisco assembly intermidate of Arabidopsis thaliana Rubisco accumulation factor 1 (AtRaf1) and Rubisco large subunit (RbcL) Descriptor: Ribulose bisphosphate carboxylase large chain, Rubisco accumulation factor 1.2, chloroplastic Authors: Wang, R, Song, H, Zhang, W, Wang, N, Zhang, S, Shao, R. Deposit date: 2023-03-10 Release date: 2023-11-01 Last modified: 2023-12-20 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structural insights into the functions of Raf1 and Bsd2 in hexadecameric Rubisco assembly. Mol Plant, 16, 2023
8INW	Crystal Structure of SARS-CoV-2 Main Protease (Mpro) K90R Mutant in Complex with Inhibitor nirmatrelvir Descriptor: (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide, 3C-like proteinase Authors: Lin, M, Liu, X. Deposit date: 2023-03-10 Release date: 2024-03-13 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) K90R Mutant in Complex with Inhibitor nirmatrelvir To Be Published
8INV	Crystal structure of UGT74AN3-UDP-BUF Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Glycosyltransferase, URIDINE-5'-DIPHOSPHATE, ... Authors: Long, F, Huang, W. Deposit date: 2023-03-10 Release date: 2024-01-24 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Substrate Promiscuity, Crystal Structure, and Application of a Plant UDP-Glycosyltransferase UGT74AN3 Acs Catalysis, 14, 2024
8INU	Crystal Structure of SARS-CoV-2 Main Protease (Mpro) G15S Mutant in Complex with Inhibitor nirmatrelvir Descriptor: (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide, 3C-like proteinase Authors: Lin, M, Liu, X. Deposit date: 2023-03-10 Release date: 2024-03-13 Method: X-RAY DIFFRACTION (1.69 Å) Cite: Crystal Structure of SARS-CoV-2 Main Protease (Mpro) G15S Mutant To Be Published

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