Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

1JNY
DownloadVisualize
BU of 1jny by Molmil
Crystal structure of Sulfolobus solfataricus elongation factor 1 alpha in complex with GDP
Descriptor: Elongation factor 1-alpha, GUANOSINE-5'-DIPHOSPHATE
Authors:Vitagliano, L, Masullo, M, Sica, F, Zagari, A, Bocchini, V.
Deposit date:2001-07-26
Release date:2002-01-23
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The crystal structure of Sulfolobus solfataricus elongation factor 1alpha in complex with GDP reveals novel features in nucleotide binding and exchange.
EMBO J., 20, 2001
1JOV
DownloadVisualize
BU of 1jov by Molmil
Crystal Structure Analysis of HI1317
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, HI1317, SULFATE ION
Authors:Bonander, N, Tordova, M, Howard, A.J, Eisenstein, E, Gilliland, G, Structure 2 Function Project (S2F)
Deposit date:2001-07-31
Release date:2003-06-24
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Crystal 1.57-A Crystal Structure of HI1317
TO BE PUBLISHED
4IE1
DownloadVisualize
BU of 4ie1 by Molmil
Crystal structure of human Arginase-1 complexed with inhibitor 1h
Descriptor: Arginase-1, MANGANESE (II) ION, [(5R)-5-amino-5-carboxy-8-hydroxyoctyl](trihydroxy)borate(1-)
Authors:Cousido-Siah, A, Mitschler, A, Ruiz, F.X, Beckett, P, Van Zandt, M.C, Ji, M.K, Whitehouse, D, Ryder, T, Jagdmann, E, Andreoli, M, Mazur, A, Padmanilayam, M, Schroeter, H, Golebiowski, A, Podjarny, A.
Deposit date:2012-12-13
Release date:2013-03-20
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.0006 Å)
Cite:2-Substituted-2-amino-6-boronohexanoic acids as arginase inhibitors.
Bioorg.Med.Chem.Lett., 23, 2013
2RG2
DownloadVisualize
BU of 2rg2 by Molmil
Crystal structure of variant R18L of conjugated bile acid hydrolase from Clostridium perfringens
Descriptor: 1,2-ETHANEDIOL, Choloylglycine hydrolase, GLYCEROL, ...
Authors:Rossmann, M, Saenger, W.
Deposit date:2007-10-02
Release date:2009-02-17
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural analysis of variants of conjugated bile acid hydrolase from Clostridium perfringens
To be Published
3GG8
DownloadVisualize
BU of 3gg8 by Molmil
Crystal structure of the Toxoplasma gondii Pyruvate Kinase N terminal truncated
Descriptor: GLYCEROL, Pyruvate kinase, SULFATE ION
Authors:Wernimont, A.K, Lew, J, Allali-Hassani, A, Vedadi, M, Bochkarev, A, Arrowsmith, C.H, Bountra, C, Weigelt, J, Edwards, A.M, Hills, T, Schapira, M, Hui, R, Pizarro, J.C, Structural Genomics Consortium (SGC)
Deposit date:2009-02-27
Release date:2009-05-26
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:The crystal structure of Toxoplasma gondii pyruvate kinase 1.
Plos One, 5, 2010
4J1K
DownloadVisualize
BU of 4j1k by Molmil
CRYSTAL STRUCTURE OF BACE-1 IN COMPLEX WITH 5-Cyano-pyridine-2-carboxylic acid [3-((4R,5R,6S)-2-amino-5-fluoro-4-methyl-6-trifluoromethyl-5,6-dihydro-4H-[1,3]oxazin-4-yl)-4-fluoro-phenyl]-amide
Descriptor: Beta-secretase 1, DIMETHYL SULFOXIDE, N-{3-[(4R,5R,6S)-2-amino-5-fluoro-4-methyl-6-(trifluoromethyl)-5,6-dihydro-4H-1,3-oxazin-4-yl]-4-fluorophenyl}-5-cyanopyridine-2-carboxamide, ...
Authors:Kuglstatter, A, Stihle, M.
Deposit date:2013-02-01
Release date:2013-05-01
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:beta-Secretase (BACE1) Inhibitors with High In Vivo Efficacy Suitable for Clinical Evaluation in Alzheimer s Disease
J.Med.Chem., 56, 2013
3TDF
DownloadVisualize
BU of 3tdf by Molmil
Crystal structure of the complex of Dihydrodipicolinate synthase from Acinetobacter baumannii with 2-Ketobutanoic acid at 1.99 A resolution
Descriptor: 2-KETOBUTYRIC ACID, Dihydrodipicolinate synthase
Authors:Kumar, M, Kaushik, S, Sinha, M, Kaur, P, Tewari, R, Sharma, S, Singh, T.P.
Deposit date:2011-08-11
Release date:2011-08-31
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Crystal structure of the complex of Dihydrodipicolinate synthase from Acinetobacter baumannii with 2-Ketobutanoic acid at 1.99 A resolution
To be Published
2YSE
DownloadVisualize
BU of 2yse by Molmil
Solution structure of the second WW domain from the human membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1. MAGI-1
Descriptor: Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1
Authors:Ohnishi, S, Sato, M, Koshiba, S, Harada, T, Watanabe, S, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-03
Release date:2007-10-09
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the second WW domain from the human membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1. MAGI-1
To be Published
7JJO
DownloadVisualize
BU of 7jjo by Molmil
Structural Basis of the Activation of Heterotrimeric Gs-protein by Isoproterenol-bound Beta1-Adrenergic Receptor
Descriptor: Beta1-Adrenergic Receptor, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Su, M, Zhu, L, Zhang, Y, Paknejad, N, Dey, R, Huang, J, Lee, M.Y, Williams, D, Jordan, K.D, Eng, E.T, Ernst, O.P, Meyerson, J.R, Hite, R.K, Walz, T, Liu, W, Huang, X.Y.
Deposit date:2020-07-27
Release date:2020-09-02
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Structural Basis of the Activation of Heterotrimeric Gs-Protein by Isoproterenol-Bound beta 1 -Adrenergic Receptor.
Mol.Cell, 80, 2020
4DXA
DownloadVisualize
BU of 4dxa by Molmil
Co-crystal structure of Rap1 in complex with KRIT1
Descriptor: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE, Krev interaction trapped protein 1, MAGNESIUM ION, ...
Authors:Li, X, Zhang, R, Boggon, T.J.
Deposit date:2012-02-27
Release date:2012-05-16
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural Basis for Small G Protein Effector Interaction of Ras-related Protein 1 (Rap1) and Adaptor Protein Krev Interaction Trapped 1 (KRIT1).
J.Biol.Chem., 287, 2012
2ZSM
DownloadVisualize
BU of 2zsm by Molmil
Crystal structure of glutamate-1-semialdehyde 2,1-aminomutase from Aeropyrum pernix, hexagonal form
Descriptor: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, CHLORIDE ION, Glutamate-1-semialdehyde 2,1-aminomutase
Authors:Mizutani, H, Kunishima, N.
Deposit date:2008-09-17
Release date:2008-10-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of glutamate-1-semialdehyde 2,1-aminomutase from Aeropyrum pernix
To be Published
1MTV
DownloadVisualize
BU of 1mtv by Molmil
FACTOR XA SPECIFIC INHIBITOR IN COMPLEX WITH BOVINE TRYPSIN
Descriptor: (+)-2-[4-[(-1-ACETIMIDOYL-4-PIPERIDINYL)OXY]-3-(7-AMIDINO-2-NAPHTHYL)PROPIONIC ACID, CALCIUM ION, TRYPSIN
Authors:Stubbs, M.T.
Deposit date:1997-05-16
Release date:1997-11-12
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of factor Xa specific inhibitors in complex with trypsin: structural grounds for inhibition of factor Xa and selectivity against thrombin.
FEBS Lett., 375, 1995
4DGA
DownloadVisualize
BU of 4dga by Molmil
TRIMCyp cyclophilin domain from Macaca mulatta: HIV-1 CA(O-loop) complex
Descriptor: TRIMCyp, capsid protein
Authors:Caines, M.E.C, Bichel, K, Price, A.J, McEwan, W.A, James, L.C.
Deposit date:2012-01-25
Release date:2012-02-08
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Diverse HIV viruses are targeted by a conformationally dynamic antiviral.
Nat.Struct.Mol.Biol., 19, 2012
2JX1
DownloadVisualize
BU of 2jx1 by Molmil
Structure of the fifth zinc finger of Myelin Transcription Factor 1 in complex with RARE DNA
Descriptor: DNA (5'-D(*DAP*DCP*DCP*DGP*DAP*DAP*DAP*DGP*DTP*DTP*DCP*DAP*DC)-3'), DNA (5'-D(*DGP*DTP*DGP*DAP*DAP*DCP*DTP*DTP*DTP*DCP*DGP*DGP*DT)-3'), Myelin transcription factor 1
Authors:Gamsjaeger, R, Swanton, M.K, Kobus, F.J, Lehtomaki, E, Lowry, J.A, Kwan, A.H, Matthews, J.M, Mackay, J.P.
Deposit date:2007-11-01
Release date:2007-12-11
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structure of the fifth zinc finger of Myelin Transcription Factor 1 in complex with RARE DNA
To be Published
3TCO
DownloadVisualize
BU of 3tco by Molmil
Crystallographic and spectroscopic characterization of Sulfolobus solfataricus TrxA1 provide insights into the determinants of thioredoxin fold stability
Descriptor: 1,2-ETHANEDIOL, Thioredoxin (TrxA-1)
Authors:Esposito, L, Ruggiero, A, Masullo, M, Ruocco, M.R, Lamberti, A, Arcari, P, Zagari, A, Vitagliano, L.
Deposit date:2011-08-09
Release date:2011-11-30
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystallographic and spectroscopic characterizations of Sulfolobus solfataricus TrxA1 provide insights into the determinants of thioredoxin fold stability.
J.Struct.Biol., 177, 2012
3OOY
DownloadVisualize
BU of 3ooy by Molmil
Crystal structure of human Transketolase (TKT)
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CALCIUM ION, ...
Authors:Krojer, T, Krysztofinska, E, Guo, K, Pilka, E, Kochan, G, Chaikuad, A, Vollmar, M, von Delft, F, Bountra, C, Arrowsmith, C.H, Weigelt, J, Edwards, A, Kavanagh, K, Oppermann, U, Structural Genomics Consortium (SGC)
Deposit date:2010-08-31
Release date:2010-11-17
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure of human Transketolase (TKT)
To be Published
4IMD
DownloadVisualize
BU of 4imd by Molmil
Crystal Structure of Pasteurella multocida N-Acetyl-D-Neuraminic acid lyase trapped with pyruvate covalently bound through a Schiff base to Lys164
Descriptor: 1,2-ETHANEDIOL, N-acetylneuraminate lyase, PHOSPHATE ION
Authors:Fisher, A.J, Huynh, N.
Deposit date:2013-01-02
Release date:2013-11-06
Last modified:2025-03-26
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Basis for Substrate Specificity and Mechanism of N-Acetyl-d-neuraminic Acid Lyase from Pasteurella multocida.
Biochemistry, 52, 2013
1T1I
DownloadVisualize
BU of 1t1i by Molmil
High Resolution Crystal Structure of Mutant W129A of Kumamolisin, a Sedolisin Type Proteinase (previously called Kumamolysin or KSCP)
Descriptor: CALCIUM ION, SULFATE ION, kumamolisin
Authors:Comellas-Bigler, M, Maskos, K, Huber, R, Oyama, H, Oda, K, Bode, W.
Deposit date:2004-04-16
Release date:2004-08-03
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:1.2 a crystal structure of the serine carboxyl proteinase pro-kumamolisin: structure of an intact pro-subtilase
Structure, 12, 2004
2YKI
DownloadVisualize
BU of 2yki by Molmil
Tricyclic series of Hsp90 inhibitors
Descriptor: 1-H-PYRROLO[2,3-B]PYRIDINE-4-CARBOXYLIC ACID [4-(3H-IMIDAZO[4,5-C]PYRIDIN-2-YL)-9H-FLUOREN-9-YL]-AMIDE, HEAT SHOCK PROTEIN HSP 90-ALPHA
Authors:Dupuy, A, Vallee, F.
Deposit date:2011-05-27
Release date:2011-10-19
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Tricyclic Series of Heat Shock Protein 90 (Hsp90) Inhibitors Part I: Discovery of Tricyclic Imidazo[4,5-C]Pyridines as Potent Inhibitors of the Hsp90 Molecular Chaperone.
J.Med.Chem., 54, 2011
4R4B
DownloadVisualize
BU of 4r4b by Molmil
Crystal structure of the anti-hiv-1 antibody 2.2c
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, FAB 2.2C HEAVY CHAIN, FAB 2.2C LIGHT CHAIN, ...
Authors:McLellan, J.S, Acharya, P, Huang, C.-C, Robinson, J, Kwong, P.D.
Deposit date:2014-08-19
Release date:2014-09-10
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (2.199 Å)
Cite:Structural Definition of an Antibody-Dependent Cellular Cytotoxicity Response Implicated in Reduced Risk for HIV-1 Infection.
J.Virol., 88, 2014
4M1X
DownloadVisualize
BU of 4m1x by Molmil
Tetrameric ring structure of 201phi2-1p060 from Pseudomonas phage 201phi2-1
Descriptor: DI(HYDROXYETHYL)ETHER, uncharacterized protein 201phi2-1p060
Authors:Partridge, J.R, Zehr, E.A, Agard, D.A.
Deposit date:2013-08-04
Release date:2014-08-06
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Tetrameric ring structure of 201phi2-1p060 from Pseudomonas phage 201phi2-1
To be Published
3O4P
DownloadVisualize
BU of 3o4p by Molmil
DFPase at 0.85 Angstrom resolution (H atoms included)
Descriptor: 1,2-DIMETHOXYETHANE, 1,2-ETHANEDIOL, 1-ETHOXY-2-(2-METHOXYETHOXY)ETHANE, ...
Authors:Liebschner, D, Elias, M, Koepke, J, Lecomte, C, Guillot, B, Jelsch, C, Chabriere, E.
Deposit date:2010-07-27
Release date:2011-08-17
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (0.85 Å)
Cite:Hydrogen atoms in protein structures: high-resolution X-ray diffraction structure of the DFPase.
BMC Res Notes, 6, 2013
3NYT
DownloadVisualize
BU of 3nyt by Molmil
X-ray crystal structure of the WlbE (WpbE) aminotransferase from pseudomonas aeruginosa, mutation K185A, in complex with the PLP external aldimine adduct with UDP-3-amino-2-N-acetyl-glucuronic acid, at 1.3 angstrom resolution
Descriptor: (2S,3S,4R,5R,6R)-5-(acetylamino)-6-{[(R)-{[(S)-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}-3-hydroxy-4-{[(1E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}tetrahydro-2H-pyran-2-carboxylic acid (non-preferred name), Aminotransferase WbpE, SODIUM ION
Authors:Holden, H.M, Thoden, J.B.
Deposit date:2010-07-15
Release date:2010-07-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.301 Å)
Cite:Structural investigation on WlaRG from Campylobacter jejuni: A sugar aminotransferase.
Protein Sci., 26, 2017
2B92
DownloadVisualize
BU of 2b92 by Molmil
Crystal-structure of the N-terminal Large GTPase Domain of human Guanylate Binding protein 1 (hGBP1) in complex with GDP/AlF3
Descriptor: ALUMINUM FLUORIDE, GUANOSINE-5'-DIPHOSPHATE, Interferon-induced guanylate-binding protein 1, ...
Authors:Ghosh, A, Praefcke, G.J.K, Renault, L, Wittinghofer, A, Herrmann, C.
Deposit date:2005-10-10
Release date:2006-03-07
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:How guanylate-binding proteins achieve assembly-stimulated processive cleavage of GTP to GMP.
Nature, 440, 2006
3GY5
DownloadVisualize
BU of 3gy5 by Molmil
A comparative study on the inhibition of bovine beta-trypsin by bis-benzamidines diminazene and pentamidine by X-ray crystallography and ITC
Descriptor: 1,2-ETHANEDIOL, BERENIL, CALCIUM ION, ...
Authors:Perilo, C.S, Pereira, M.T, Santoro, M.M, Nagem, R.A.P.
Deposit date:2009-04-03
Release date:2010-03-23
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Structural binding evidence of the trypanocidal drugs Berenil and Pentacarinate active principles to a serine protease model.
Int.J.Biol.Macromol., 46, 2010

242842

PDB entries from 2025-10-08

PDB statisticsPDBj update infoContact PDBjnumon