PDB: 72678 resultsInfo pagesStatus searchChemie searchBIRD

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5HW4	Crystal structure of Escherichia coli 16S rRNA methyltransferase RsmI in complex with AdoMet Descriptor: Ribosomal RNA small subunit methyltransferase I, S-ADENOSYLMETHIONINE Authors: Zhao, M, Zhang, H, Dong, Y, Gong, Y. Deposit date: 2016-01-28 Release date: 2016-10-19 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.211 Å) Cite: Structural Insights into the Methylation of C1402 in 16S rRNA by Methyltransferase RsmI Plos One, 11, 2016
6KUV	Structure of influenza D virus polymerase bound to cRNA promoter in class 2 Descriptor: 3'-cRNA, 5'-cRNA, Polymerase 3, ... Authors: Peng, Q, Peng, R, Qi, J, Gao, G.F, Shi, Y. Deposit date: 2019-09-02 Release date: 2019-10-02 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Structural insight into RNA synthesis by influenza D polymerase. Nat Microbiol, 4, 2019
3DEG	Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNP Descriptor: 30S RNA helix 14, 30S RNA helix 8, 30S ribosomal protein S12, ... Authors: Connell, S.R, Topf, M, Qin, Y, Wilson, D.N, Mielke, T, Fucini, P, Nierhaus, K.H, Spahn, C.M.T. Deposit date: 2008-06-10 Release date: 2008-08-19 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (10.9 Å) Cite: A new tRNA intermediate revealed on the ribosome during EF4-mediated back-translocation Nat.Struct.Mol.Biol., 15, 2008
5D99	3DW4 redetermined by direct methods starting from random phase angles Descriptor: GLYCEROL, RNA (27-MER) hairpin from sarcin-ricin domain of E. coli 23S rRNA Authors: Mooers, B.H.M. Deposit date: 2015-08-18 Release date: 2016-04-13 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (0.97 Å) Cite: Direct-methods structure determination of a trypanosome RNA-editing substrate fragment with translational pseudosymmetry. Acta Crystallogr D Struct Biol, 72, 2016
7Q0J	RNA polymerase elongation complex in more-swiveled conformation Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Zhu, C, Guo, X, Weixlbaumer, A. Deposit date: 2021-10-15 Release date: 2022-03-23 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: Transcription factors modulate RNA polymerase conformational equilibrium. Nat Commun, 13, 2022
5D0A	Crystal structure of epoxyqueuosine reductase with cleaved RNA stem loop Descriptor: COBALAMIN, Epoxyqueuosine reductase, GLYCEROL, ... Authors: Dowling, D.P, Miles, Z.D, Kohrer, C, Bandarian, V, Drennan, C.L. Deposit date: 2015-08-03 Release date: 2016-09-28 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Molecular basis of cobalamin-dependent RNA modification. Nucleic Acids Res., 44, 2016
6KUK	Structure of influenza D virus polymerase bound to vRNA promoter in mode A conformation (class A1) Descriptor: 3'-vRNA, 5'-vRNA, Polymerase 3, ... Authors: Peng, Q, Peng, R, Qi, J, Gao, G.F, Shi, Y. Deposit date: 2019-09-02 Release date: 2019-10-02 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Structural insight into RNA synthesis by influenza D polymerase. Nat Microbiol, 4, 2019
6KUR	Structure of influenza D virus polymerase bound to vRNA promoter in Mode B conformation (Class B1) Descriptor: 3'-vRNA, 5'-vRNA, Polymerase 3, ... Authors: Peng, Q, Peng, R, Qi, J, Gao, G.F, Shi, Y. Deposit date: 2019-09-02 Release date: 2019-10-02 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Structural insight into RNA synthesis by influenza D polymerase. Nat Microbiol, 4, 2019
6KUU	Structure of influenza D virus polymerase bound to vRNA promoter in Mode B conformation (Class B3) Descriptor: 3'-vRNA, 5'-vRNA, Polymerase 3, ... Authors: Peng, Q, Peng, R, Qi, J, Gao, G.F, Shi, Y. Deposit date: 2019-09-02 Release date: 2019-12-11 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (4 Å) Cite: Structure of influenza D virus polymerase bound to vRNA promoter in Mode B conformation (Class B3) To Be Published
1RC7	Crystal structure of RNase III Mutant E110K from Aquifex Aeolicus complexed with ds-RNA at 2.15 Angstrom Resolution Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-R(*GP*GP*CP*GP*CP*GP*CP*GP*CP*C)-3', Ribonuclease III Authors: Blaszczyk, J, Gan, J, Ji, X. Deposit date: 2003-11-03 Release date: 2004-03-30 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Noncatalytic Assembly of Ribonuclease III with Double-Stranded RNA. Structure, 12, 2004
7DD3	Cryo-EM structure of the pre-mRNA-loaded DEAH-box ATPase/helicase Prp2 in complex with Spp2 Descriptor: PRP2 isoform 1, Pre-mRNA-splicing factor SPP2, pre-mRNA Authors: Bai, R, Wan, R, Yan, C, Qi, J, Zhang, P, Lei, J, Shi, Y. Deposit date: 2020-10-27 Release date: 2021-01-06 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Mechanism of spliceosome remodeling by the ATPase/helicase Prp2 and its coactivator Spp2. Science, 371, 2021
6KUT	Structure of influenza D virus polymerase bound to vRNA promoter in Mode B conformation (Class B2) Descriptor: 3'-vRNA, 5'-vRNA, Polymerase 3, ... Authors: Peng, Q, Peng, R, Qi, J, Gao, G.F, Shi, Y. Deposit date: 2019-09-02 Release date: 2019-10-02 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Structural insight into RNA synthesis by influenza D polymerase. Nat Microbiol, 4, 2019
6KUJ	Structure of influenza D virus polymerase bound to cRNA promoter in class 1 Descriptor: 3'-cRNA promoter, 5'-cRNA promoter, Polymerase 3, ... Authors: Peng, Q, Peng, R, Qi, J, Gao, G.F, Shi, Y. Deposit date: 2019-09-02 Release date: 2019-10-02 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structure of influenza D virus polymerase bound to cRNA promoter in Mode A conformation NAT NANOTECHNOL, 2019
8FN6	Cryo-EM structure of RNase-untreated RESC-A in trypanosomal RNA editing Descriptor: ADENOSINE-5'-TRIPHOSPHATE, RNA-editing substrate-binding complex protein 1 (RESC1), RNA-editing substrate-binding complex protein 2 (RESC2), ... Authors: Liu, S, Wang, H, Li, X, Zhang, F, Lee, J.K.J, Li, Z, Yu, C, Zhao, X, Hu, J.J, Suematsu, T, Alvarez-Cabrera, A.L, Liu, Q, Zhang, L, Huang, L, Aphasizheva, I, Aphasizhev, R, Zhou, Z.H. Deposit date: 2022-12-27 Release date: 2023-07-19 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Structural basis of gRNA stabilization and mRNA recognition in trypanosomal RNA editing. Science, 381, 2023
7JT1	70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound (+9-III) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Carbone, C.E, Korostelev, A.A. Deposit date: 2020-08-16 Release date: 2020-11-11 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: ArfB can displace mRNA to rescue stalled ribosomes Nat Commun, 11, 2020
7JSS	ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Carbone, C.E, Korostelev, A.A. Deposit date: 2020-08-15 Release date: 2020-11-11 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: ArfB can displace mRNA to rescue stalled ribosomes. Nat Commun, 11, 2020
7JT3	Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Carbone, C.E, Korostelev, A.A. Deposit date: 2020-08-17 Release date: 2020-11-11 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: ArfB can displace mRNA to rescue stalled ribosomes Nat Commun, 11, 2020
7JSZ	ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Carbone, C.E, Korostelev, A.A. Deposit date: 2020-08-16 Release date: 2020-11-11 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: ArfB can displace mRNA to rescue stalled ribosomes. Nat Commun, 11, 2020
4KZZ	Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A Descriptor: 18S Ribosomal RNA, 40S Ribosomal Protein RACK1, 40S Ribosomal Protein S10, ... Authors: Lomakin, I.B, Steitz, T.A. Deposit date: 2013-05-30 Release date: 2013-07-24 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (7.0305 Å) Cite: The initiation of mammalian protein synthesis and mRNA scanning mechanism. Nature, 500, 2013
5M9Z	Second zinc-binding domain from yeast Pcf11 Descriptor: Protein PCF11, ZINC ION Authors: Mackereth, C. Deposit date: 2016-11-02 Release date: 2017-08-02 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Distinct roles of Pcf11 zinc-binding domains in pre-mRNA 3'-end processing. Nucleic Acids Res., 45, 2017
7JT2	70S ribosome stalled on long mRNA with ArfB bound in the A site Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Carbone, C.E, Korostelev, A.A. Deposit date: 2020-08-16 Release date: 2020-11-11 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: ArfB can displace mRNA to rescue stalled ribosomes Nat Commun, 11, 2020
7JSW	ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Carbone, C.E, Korostelev, A.A. Deposit date: 2020-08-16 Release date: 2020-11-11 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: ArfB can displace mRNA to rescue stalled ribosomes. Nat Commun, 11, 2020
2D0C	Crystal structure of Bst-RNase HIII in complex with Mn2+ Descriptor: MANGANESE (II) ION, ribonuclease HIII Authors: Chon, H, Matsumura, H, Koga, Y, Takano, K, Kanaya, S. Deposit date: 2005-07-31 Release date: 2006-07-18 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Crystal structure and structure-based mutational analyses of RNase HIII from Bacillus stearothermophilus: a new type 2 RNase H with TBP-like substrate-binding domain at the N terminus J.Mol.Biol., 356, 2006
5BZU	Crystal structure of the RNA-binding domain of yeast Puf5p bound to AAT2 RNA Descriptor: Suppressor protein MPT5, UGUAAUA Authors: Qiu, C, Hall, T.M.T. Deposit date: 2015-06-11 Release date: 2015-09-23 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.501 Å) Cite: RNA regulatory networks diversified through curvature of the PUF protein scaffold. Nat Commun, 6, 2015
2D0B	Crystal structure of Bst-RNase HIII in complex with Mg2+ Descriptor: MAGNESIUM ION, ribonuclease HIII Authors: Chon, H, Matsumura, H, Koga, Y, Takano, K, Kanaya, S. Deposit date: 2005-07-31 Release date: 2006-07-18 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal structure and structure-based mutational analyses of RNase HIII from Bacillus stearothermophilus: a new type 2 RNase H with TBP-like substrate-binding domain at the N terminus J.Mol.Biol., 356, 2006

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