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6V8I
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Composite atomic model of the Staphylococcus aureus phage 80alpha baseplate
Descriptor: Distal Tail Protein, gp58, FE (III) ION, ...
Authors:Kizziah, J.L, Dokland, T.
Deposit date:2019-12-11
Release date:2020-03-04
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structure of the host cell recognition and penetration machinery of a Staphylococcus aureus bacteriophage.
Plos Pathog., 16, 2020
7ZHY
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BU of 7zhy by Molmil
Leishmania donovani Glucose 6-Phosphate Dehydrogenase C138S mutant complexed with NADP(H)
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Glucose-6-phosphate 1-dehydrogenase, ...
Authors:Fritz-Wolf, K, Berneburg, I.
Deposit date:2022-04-07
Release date:2022-12-14
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Crystal structure of Leishmania donovani glucose 6-phosphate dehydrogenase reveals a unique N-terminal domain.
Commun Biol, 5, 2022
7SC5
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BU of 7sc5 by Molmil
Cytoplasmic tail deleted HIV Env trimer in nanodisc
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp120, ...
Authors:Yang, S, Walz, T.
Deposit date:2021-09-27
Release date:2022-11-09
Last modified:2023-02-22
Method:ELECTRON MICROSCOPY (3.88 Å)
Cite:Dynamic HIV-1 spike motion creates vulnerability for its membrane-bound tripod to antibody attack.
Nat Commun, 13, 2022
6VE7
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BU of 6ve7 by Molmil
The inner junction complex of Chlamydomonas reinhardtii doublet microtubule
Descriptor: Cilia- and flagella-associated protein 20, FAP276, FAP52, ...
Authors:Khalifa, A.A.Z, Ichikawa, M, Bui, K.H.
Deposit date:2019-12-30
Release date:2020-02-05
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:The inner junction complex of the cilia is an interaction hub that involves tubulin post-translational modifications.
Elife, 9, 2020
7SD3
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BU of 7sd3 by Molmil
Cytoplasmic tail deleted HIV-1 Env bound with three 4E10 Fabs
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4E10 Fab heavy chain, ...
Authors:Yang, S, Walz, T.
Deposit date:2021-09-29
Release date:2022-11-09
Last modified:2023-02-22
Method:ELECTRON MICROSCOPY (3.67 Å)
Cite:Dynamic HIV-1 spike motion creates vulnerability for its membrane-bound tripod to antibody attack.
Nat Commun, 13, 2022
6UOT
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BU of 6uot by Molmil
Cryo-EM structure of the PrgHK periplasmic ring from the Salmonella SPI-1 type III secretion needle complex solved at 3.3 angstrom resolution
Descriptor: Lipoprotein PrgK, Protein PrgH
Authors:Butan, C, Galan, J.
Deposit date:2019-10-15
Release date:2020-07-01
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:High-resolution view of the type III secretion export apparatus in situ reveals membrane remodeling and a secretion pathway.
Proc.Natl.Acad.Sci.USA, 116, 2019
7ZHU
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BU of 7zhu by Molmil
Leishmania donovani Glucose 6-Phosphate Dehydrogenase complexed with NADP(H)
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Glucose-6-phosphate 1-dehydrogenase, ...
Authors:Fritz-Wolf, K, Berneburg, I.
Deposit date:2022-04-07
Release date:2022-12-14
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of Leishmania donovani glucose 6-phosphate dehydrogenase reveals a unique N-terminal domain.
Commun Biol, 5, 2022
7RTF
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BU of 7rtf by Molmil
SthK R120A Closed State
Descriptor: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, SthK
Authors:Gao, X, Nimigean, C.
Deposit date:2021-08-13
Release date:2022-11-23
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Gating intermediates reveal inhibitory role of the voltage sensor in a cyclic nucleotide-modulated ion channel.
Nat Commun, 13, 2022
7RTJ
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BU of 7rtj by Molmil
SthK Y26F Activated State
Descriptor: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, SthK
Authors:Gao, X, Nimigean, C.
Deposit date:2021-08-13
Release date:2022-11-23
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Gating intermediates reveal inhibitory role of the voltage sensor in a cyclic nucleotide-modulated ion channel.
Nat Commun, 13, 2022
6UWT
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BU of 6uwt by Molmil
Clostridium difficile binary toxin translocase CDTb tetradecamer in symmetric conformation
Descriptor: ADP-ribosyltransferase binding component, CALCIUM ION
Authors:Xu, X, Pozharski, E, des Georges, A.
Deposit date:2019-11-05
Release date:2020-01-22
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structure of the cell-binding component of theClostridium difficilebinary toxin reveals a di-heptamer macromolecular assembly.
Proc.Natl.Acad.Sci.USA, 117, 2020
7ZZQ
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BU of 7zzq by Molmil
BcsH-BcsD 'beads-on-a-string' filament, local refine
Descriptor: BcsH fragment, Cellulose biosynthesis protein
Authors:Krasteva, P.V, Abidi, W, Decossas, M.
Deposit date:2022-05-26
Release date:2022-12-28
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Bacterial crystalline cellulose secretion via a supramolecular BcsHD scaffold.
Sci Adv, 8, 2022
7ZYV
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BU of 7zyv by Molmil
Cryo-EM structure of catalytically active Spinacia oleracea cytochrome b6f in complex with endogenous plastoquinones at 2.13 A resolution
Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE, BETA-CAROTENE, ...
Authors:Sarewicz, M, Szwalec, M, Pintscher, S, Indyka, P, Rawski, M, Pietras, R, Mielecki, B, Koziej, L, Jaciuk, M, Glatt, S, Osyczka, A.
Deposit date:2022-05-25
Release date:2023-01-25
Method:ELECTRON MICROSCOPY (2.13 Å)
Cite:High-resolution cryo-EM structures of plant cytochrome b 6 f at work.
Sci Adv, 9, 2023
7SKC
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BU of 7skc by Molmil
Solution structure of spider toxin Ssp1a
Descriptor: Ssp1a toxin
Authors:Wilson, D.T, Daly, N.L, Dongol, Y, Lewis, R.J.
Deposit date:2021-10-20
Release date:2022-02-02
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Voltage-Gated Sodium Channel Modulation by a New Spider Toxin Ssp1a Isolated From an Australian Theraphosid.
Front Pharmacol, 12, 2021
7ZRV
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BU of 7zrv by Molmil
cryo-EM structure of omicron spike in complex with de novo designed binder, full map
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein,Envelope glycoprotein, ...
Authors:Pablo, G, Sarah, W, Alexandra, V.H, Anthony, M, Andreas, S, Zander, H, Dongchun, N, Shuguang, T, Freyr, S, Casper, G, Priscilla, T, Alexandra, T, Stephane, R, Sandrine, G, Jane, M, Aaron, P, Zepeng, X, Yan, C, Pu, H, George, G, Elisa, O, Beat, F, Didier, T, Henning, S, Michael, B, Bruno, E.C.
Deposit date:2022-05-05
Release date:2023-03-08
Last modified:2023-05-24
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:De novo design of protein interactions with learned surface fingerprints.
Nature, 617, 2023
7SOB
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BU of 7sob by Molmil
SARS-CoV-2 S B.1.617.1 kappa variant + S309 + S2L20 Global Refinement
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, S2L20 Fab heavy chain, S2L20 Fab light chain, ...
Authors:McCallum, M, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2021-10-29
Release date:2021-11-17
Last modified:2022-01-05
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Molecular basis of immune evasion by the Delta and Kappa SARS-CoV-2 variants.
Science, 374, 2021
7SO9
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BU of 7so9 by Molmil
SARS-CoV-2 S B.1.617.2 delta variant + S2M11 + S2L20 Global Refinement
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, S2L20 Fab heavy chain, S2L20 Fab light chain, ...
Authors:McCallum, M, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2021-10-29
Release date:2021-11-17
Last modified:2022-01-05
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Molecular basis of immune evasion by the Delta and Kappa SARS-CoV-2 variants.
Science, 374, 2021
7SOE
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BU of 7soe by Molmil
SARS-CoV-2 S B.1.617.1 kappa variant + S2X303 Global Refinement
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, S2X303 Fab heavy chain, ...
Authors:McCallum, M, Veesler, D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2021-10-29
Release date:2021-11-17
Last modified:2022-06-08
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Molecular basis of immune evasion by the Delta and Kappa SARS-CoV-2 variants.
Science, 374, 2021
6V91
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BU of 6v91 by Molmil
Crystal structure of Stringent starvation protein A (BTH_I2974) from Burkholderia thailandensis
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, FORMIC ACID, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2019-12-12
Release date:2020-01-15
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of Stringent starvation protein A (BTH_I2974) from Burkholderia thailandensis
to be published
7STW
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BU of 7stw by Molmil
Structure of DPSL (DNA Protection in Starved Cells - Like) from Pyrococcus furiosus
Descriptor: DNA protection during starvation protein, FE (III) ION, ZINC ION
Authors:Gauvin, C.C, Waghwani, H.K, Douglas, T, Lawrence, C.M.
Deposit date:2021-11-15
Release date:2021-12-01
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.37 Å)
Cite:Structure of DPSL (DNA Protection in Starved Cells - Like) from Pyrococcus furiosus
To be published
6VFT
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BU of 6vft by Molmil
Crystal structure of human delta protocadherin 17 EC1-EC4
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Harrison, O.J, Brasch, J, Shapiro, L.
Deposit date:2020-01-06
Release date:2020-03-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.71 Å)
Cite:Family-wide Structural and Biophysical Analysis of Binding Interactions among Non-clustered delta-Protocadherins.
Cell Rep, 30, 2020
7SN3
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BU of 7sn3 by Molmil
Structure of human SARS-CoV-2 spike glycoprotein trimer bound by neutralizing antibody C1C-A3 Fab (variable region)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Pan, J, Abraham, J, Shankar, S.
Deposit date:2021-10-27
Release date:2021-12-08
Last modified:2022-02-02
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural basis for continued antibody evasion by the SARS-CoV-2 receptor binding domain.
Science, 375, 2022
6UP6
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BU of 6up6 by Molmil
Endophilin B1 helical scaffold
Descriptor: Endophilin-B1
Authors:Bhatt, V.S, Sundborger-Lunna, A.C.
Deposit date:2019-10-16
Release date:2020-06-24
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Amphipathic Motifs Regulate N-BAR Protein Endophilin B1 Auto-inhibition and Drive Membrane Remodeling.
Structure, 29, 2021
6US9
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BU of 6us9 by Molmil
Influenza A M2 proton channel wild type TM domain bound to R-rimantadine
Descriptor: CHLORIDE ION, Matrix protein 2, RIMANTADINE
Authors:Thomaston, J.L, DeGrado, W.F.
Deposit date:2019-10-25
Release date:2020-10-28
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Rimantadine Binds to and Inhibits the Influenza A M2 Proton Channel without Enantiomeric Specificity.
Biochemistry, 2021
7ZNJ
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BU of 7znj by Molmil
Structure of an ALYREF-exon junction complex hexamer
Descriptor: Eukaryotic initiation factor 4A-III, N-terminally processed, MAGNESIUM ION, ...
Authors:Pacheco-Fiallos, F.B, Vorlaender, M.K, Plaschka, C.
Deposit date:2022-04-21
Release date:2023-04-12
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:mRNA recognition and packaging by the human transcription-export complex.
Nature, 616, 2023
7SY7
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BU of 7sy7 by Molmil
Cryo-EM structure of the SARS-CoV-2 D614G,N501Y,E484K,K417T mutant spike protein ectodomain bound to human ACE2 ectodomain (global refinement)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ...
Authors:Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Zhou, S, Tuttle, K.S, Kim, A, Li, W, Dimitrov, D.S, Subramaniam, S.
Deposit date:2021-11-24
Release date:2021-12-29
Method:ELECTRON MICROSCOPY (2.81 Å)
Cite:Structural analysis of receptor binding domain mutations in SARS-CoV-2 variants of concern that modulate ACE2 and antibody binding.
Cell Rep, 37, 2021

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PDB entries from 2024-08-28

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