Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6V0V
DownloadVisualize
BU of 6v0v by Molmil
Cryo-EM structure of mouse WT RAG1/2 NFC complex (DNA0)
Descriptor: CALCIUM ION, DNA (30-MER), V(D)J recombination-activating protein 1, ...
Authors:Chen, X, Yang, W, Gellert, M.
Deposit date:2019-11-19
Release date:2020-01-29
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.61 Å)
Cite:Cutting antiparallel DNA strands in a single active site.
Nat.Struct.Mol.Biol., 27, 2020
6PLY
DownloadVisualize
BU of 6ply by Molmil
CryoEM structure of zebra fish alpha-1 glycine receptor bound with GABA in SMA, open state
Descriptor: GAMMA-AMINO-BUTANOIC ACID, Glycine receptor subunit alphaZ1, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Yu, J, Zhu, H, Gouaux, E.
Deposit date:2019-07-01
Release date:2021-01-06
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Mechanism of gating and partial agonist action in the glycine receptor.
Cell, 184, 2021
7MM5
DownloadVisualize
BU of 7mm5 by Molmil
Crystal structure of HCV NS3/4A protease in complex with NR02-60
Descriptor: (1R)-1-cyclopentyl-2,2,2-trifluoroethyl {(2R,4R,6S,12Z,13aS,14aR,16aS)-2-[(7-methoxy-3-methylquinoxalin-2-yl)oxy]-14a-[(1-methylcyclopropane-1-sulfonyl)carbamoyl]-5,16-dioxo-1,2,3,5,6,7,8,9,10,11,13a,14,14a,15,16,16a-hexadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-yl}carbamate, 1,2-ETHANEDIOL, NS3/4a protease, ...
Authors:Zephyr, J, Schiffer, C.A.
Deposit date:2021-04-29
Release date:2022-03-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Deciphering the Molecular Mechanism of HCV Protease Inhibitor Fluorination as a General Approach to Avoid Drug Resistance.
J.Mol.Biol., 434, 2022
6ZU0
DownloadVisualize
BU of 6zu0 by Molmil
Crystal structure of citrate synthase (GltA) from Pseudomonas aeruginosa
Descriptor: Citrate synthase
Authors:Wijaya, A.J, Brear, P, Dolan, S.K, Welch, M.
Deposit date:2020-07-21
Release date:2021-07-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.397 Å)
Cite:Crystal structure of citrate synthase (GltA) from Pseudomonas aeruginosa
To Be Published
6V1A
DownloadVisualize
BU of 6v1a by Molmil
immune receptor complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fibrinogen beta 74cit69-81, GLYCEROL, ...
Authors:Lim, J.J, Rossjohn, J.
Deposit date:2019-11-20
Release date:2020-11-25
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:The shared susceptibility epitope of HLA-DR4 binds citrullinated self-antigens and the TCR.
Sci Immunol, 6, 2021
8EBB
DownloadVisualize
BU of 8ebb by Molmil
Crystal structure of SIX6 from Fusarium oxysporum f. sp. lycopersici
Descriptor: D(-)-TARTARIC ACID, Secreted in xylem Six6
Authors:Yu, D.S, Ericsson, D.J, Williams, S.J.
Deposit date:2022-08-30
Release date:2023-06-21
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:The structural repertoire of Fusarium oxysporum f. sp. lycopersici effectors revealed by experimental and computational studies.
Elife, 12, 2024
7MMG
DownloadVisualize
BU of 7mmg by Molmil
Crystal structure of HCV NS3/4A D168A protease in complex with NR02-58
Descriptor: 1-(trifluoromethyl)cyclobutyl {(2R,4S,6S,12Z,13aS,14aR,16aS)-2-[(7-methoxy-3-methylquinoxalin-2-yl)oxy]-14a-[(1-methylcyclopropane-1-sulfonyl)carbamoyl]-5,16-dioxo-1,2,3,5,6,7,8,9,10,11,13a,14,14a,15,16,16a-hexadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-6-yl}carbamate, ARGININE, NS3/4A protease, ...
Authors:Zephyr, J, Schiffer, C.A.
Deposit date:2021-04-29
Release date:2022-03-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Deciphering the Molecular Mechanism of HCV Protease Inhibitor Fluorination as a General Approach to Avoid Drug Resistance.
J.Mol.Biol., 434, 2022
6ZRW
DownloadVisualize
BU of 6zrw by Molmil
Crystal structure of the fungal lectin CML1
Descriptor: ACETATE ION, GLYCEROL, Mucin-binding lectin 1, ...
Authors:Bleuler-Martinez, S, Olieric, V, Sharpe, M, Capitani, G, Aebi, M, Kuenzler, M.
Deposit date:2020-07-15
Release date:2021-07-28
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structure-function relationship of a novel fucoside-binding fruiting body lectin from Coprinopsis cinerea exhibiting nematotoxic activity.
Glycobiology, 32, 2022
6M2T
DownloadVisualize
BU of 6m2t by Molmil
The crystal structure of benzoate coenzyme A ligase double mutant (H333A/I334A) in complex with 2-methyl-thiazole-5 carboxylate-AMP
Descriptor: 2-methyl-1,3-thiazole-5-carboxylic acid, ADENOSINE MONOPHOSPHATE, Benzoate-coenzyme A ligase
Authors:Li, T.L, Adhikari, K.
Deposit date:2020-02-29
Release date:2021-03-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:The crystal structure of benzoate coenzyme A ligase double mutant (H333A/I334A) in complex with 2-methyl-thiazole-5 carboxylate-AMP
To Be Published
6PEJ
DownloadVisualize
BU of 6pej by Molmil
Structure of sorbitol dehydrogenase from Sinorhizobium meliloti 1021 bound to sorbitol
Descriptor: Sorbitol dehydrogenase (L-iditol 2-dehydrogenase), sorbitol
Authors:Bailey-Elkin, B.A, Kohlmeier, M.G, Oresnik, I.J, Mark, B.L.
Deposit date:2019-06-20
Release date:2020-06-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:Characterization of the sorbitol dehydrogenase SmoS from Sinorhizobium meliloti 1021
Acta Crystallogr.,Sect.D, 77, 2021
6PEU
DownloadVisualize
BU of 6peu by Molmil
Structure of YcaO enzyme from Methanocaldococcus jannaschii in complex with peptide
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GLY-ARG-LEU-GLY-PHE-TYR-GLY-TYR-ASP-LEU-GLN-ASP, MAGNESIUM ION, ...
Authors:Dong, S.-H, Nair, S.K.
Deposit date:2019-06-20
Release date:2019-11-06
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Mechanistic Basis for Ribosomal Peptide Backbone Modifications.
Acs Cent.Sci., 5, 2019
7MQ1
DownloadVisualize
BU of 7mq1 by Molmil
C9A Streptococcus pneumoniae CstR in the reduced state, space group C2
Descriptor: CHLORIDE ION, Copper-sensing transcriptional repressor csoR, GLYCEROL, ...
Authors:Fakhoury, J.N, Gonzalez-Gutierrez, G, Giedroc, D.P.
Deposit date:2021-05-05
Release date:2022-03-09
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Functional asymmetry and chemical reactivity of CsoR family persulfide sensors.
Nucleic Acids Res., 49, 2021
6LTC
DownloadVisualize
BU of 6ltc by Molmil
Crystal Structure of Nonribosomal peptide synthetases (NRPS), FmoA3 (S1046A)-alpha-methyl-L-serine-AMP bound form
Descriptor: ADENOSINE MONOPHOSPHATE, CHLORIDE ION, Nonribosomal peptide synthetase, ...
Authors:Senda, T, Harada, A.
Deposit date:2020-01-22
Release date:2021-03-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural and Functional Analyses of the Tridomain-Nonribosomal Peptide Synthetase FmoA3 for 4-Methyloxazoline Ring Formation.
Angew.Chem.Int.Ed.Engl., 60, 2021
6ZX9
DownloadVisualize
BU of 6zx9 by Molmil
Crystal structure of SIV Vpr,fused to T4 lysozyme, isolated from moustached monkey, bound to human DDB1 and human DCAF1 (amino acid residues 1046-1396)
Descriptor: DDB1- and CUL4-associated factor 1, DNA damage-binding protein 1, GLYCEROL, ...
Authors:Schwefel, D, Banchenko, S.
Deposit date:2020-07-29
Release date:2021-07-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.519729 Å)
Cite:Structural insights into Cullin4-RING ubiquitin ligase remodelling by Vpr from simian immunodeficiency viruses.
Plos Pathog., 17, 2021
6UR5
DownloadVisualize
BU of 6ur5 by Molmil
Resurfaced influenza hemagglutinin in complex with a broadly neutralizing antibody
Descriptor: Antibody heavy chain, Antibody light chain, GLYCEROL, ...
Authors:Bajic, G, Schmidt, A.G.
Deposit date:2019-10-22
Release date:2020-06-10
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (4 Å)
Cite:Structure-Guided Molecular Grafting of a Complex Broadly Neutralizing Viral Epitope.
Acs Infect Dis., 6, 2020
8E08
DownloadVisualize
BU of 8e08 by Molmil
Crystal structure of HPSE P6 in complex with tetraose pentosan inhibitor
Descriptor: 2,3,4-tri-O-sulfo-beta-D-xylopyranose-(1-4)-2,3-di-O-sulfo-beta-D-xylopyranose-(1-4)-2,3-di-O-sulfo-beta-D-xylopyranose-(1-4)-2,3-di-O-sulfo-beta-D-xylopyranose, ACETATE ION, Heparanase 50 kDa subunit, ...
Authors:Whitefield, C, Jackson, C.J.
Deposit date:2022-08-08
Release date:2023-07-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Complex Inhibitory Mechanism of Glycomimetics with Heparanase.
Biochemistry, 62, 2023
7MQS
DownloadVisualize
BU of 7mqs by Molmil
The insulin receptor ectodomain in complex with three venom hybrid insulin molecules - asymmetric conformation
Descriptor: Insulin A chain, Insulin B chain, Isoform Short of Insulin receptor
Authors:Blakely, A.D, Xiong, X, Kim, J.H, Menting, J, Schafer, I.B, Schubert, H.L, Agrawal, R, Gutmann, T, Delaine, C, Zhang, Y, Artik, G.O, Merriman, A, Eckert, D, Lawrence, M.C, Coskun, U, Fisher, S.J, Forbes, B.E, Safavi-Hemami, H, Hill, C.P, Chou, D.H.C.
Deposit date:2021-05-06
Release date:2022-03-16
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Symmetric and asymmetric receptor conformation continuum induced by a new insulin.
Nat.Chem.Biol., 18, 2022
6M3S
DownloadVisualize
BU of 6m3s by Molmil
Dimeric isocitrate dehydrogenase from Xanthomonas campestris pv. campestris 8004
Descriptor: GLYCEROL, ISOCITRATE CALCIUM COMPLEX, Isocitrate dehydrogenase, ...
Authors:Zhu, G.P.
Deposit date:2020-03-04
Release date:2021-03-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Dimeric isocitrate dehydrogenase from Xanthomonas campestris pv. campestris 8004
To Be Published
8DMU
DownloadVisualize
BU of 8dmu by Molmil
Crystal structure of macrodomain CG3568 from Drosophila melanogaster in complex with ADP-ribose
Descriptor: CG3568, CHLORIDE ION, NICKEL (II) ION, ...
Authors:Zhang, Z, Das, C.
Deposit date:2022-07-08
Release date:2023-07-12
Last modified:2024-07-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Legionella metaeffector MavL reverses ubiquitin ADP-ribosylation via a conserved arginine-specific macrodomain.
Nat Commun, 15, 2024
6PMB
DownloadVisualize
BU of 6pmb by Molmil
TRK-A IN COMPLEX WITH LIGAND 1a
Descriptor: 2-[5,7-dimethyl-2-(pyridin-3-yl)[1,2,4]triazolo[1,5-a]pyrimidin-6-yl]-N-[3-(trifluoromethyl)phenyl]acetamide, High affinity nerve growth factor receptor
Authors:Subramanian, G, Brown, D.G.
Deposit date:2019-07-01
Release date:2020-02-26
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Synthetic inhibitor leads of human tropomyosin receptor kinase A ( h TrkA).
Rsc Med Chem, 11, 2020
6V1X
DownloadVisualize
BU of 6v1x by Molmil
Cryo-EM Structure of the Hyperpolarization-Activated Potassium Channel KAT1: Tetramer
Descriptor: (2S)-1-(nonanoyloxy)-3-(phosphonooxy)propan-2-yl tetradecanoate, (3beta,5beta,14beta,17alpha)-cholestan-3-ol, Potassium channel KAT1
Authors:Clark, M.D, Contreras, G.F, Shen, R, Perozo, E.
Deposit date:2019-11-21
Release date:2020-06-03
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Electromechanical coupling in the hyperpolarization-activated K + channel KAT1.
Nature, 583, 2020
8E1P
DownloadVisualize
BU of 8e1p by Molmil
Crystal structure of BG505 SOSIP.v4.1-GT1.2 trimer in complex with gl-PGV20 and PGT124 Fabs
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BG505-SOSIP.v4.1-GT1.2gp120, ...
Authors:Sarkar, A, Kumar, S, Wilson, I.A.
Deposit date:2022-08-11
Release date:2023-06-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.82 Å)
Cite:Germline-targeting HIV-1 Env vaccination induces VRC01-class antibodies with rare insertions.
Cell Rep Med, 4, 2023
6PML
DownloadVisualize
BU of 6pml by Molmil
Crystal Structure of EcDsbA in complex benzyl ether 23
Descriptor: COPPER (II) ION, DI(HYDROXYETHYL)ETHER, Thiol:disulfide interchange protein DsbA, ...
Authors:Ilyichova, O.V, Scanlon, M.J.
Deposit date:2019-07-02
Release date:2019-11-06
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Fragment-Based Development of a Benzofuran Hit as a New Class of Escherichia coli DsbA Inhibitors.
Molecules, 24, 2019
7M09
DownloadVisualize
BU of 7m09 by Molmil
Pre-catalytic quaternary complex of DNA Polymerase Lambda with blunt-ended DSB substrate and incoming dUMPNPP
Descriptor: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, CALCIUM ION, CHLORIDE ION, ...
Authors:Kaminski, A.M, Bebenek, K, Pedersen, L.C, Kunkel, T.A.
Deposit date:2021-03-10
Release date:2022-03-16
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Analysis of diverse double-strand break synapsis with Pol lambda reveals basis for unique substrate specificity in nonhomologous end-joining.
Nat Commun, 13, 2022
6M4I
DownloadVisualize
BU of 6m4i by Molmil
Structure of CENP-E motor domain at 1.9 angstrom resolution
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Centromere-associated protein E, MAGNESIUM ION
Authors:Shibuya, A, Yokoyama, H.
Deposit date:2020-03-07
Release date:2021-03-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure and comparison of the motor domain ofcentromere-associated protein E
Acta Crystallogr.,Sect.D, 77, 2021

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon