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PDB: 1515 results

7NBB
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BU of 7nbb by Molmil
Branched Lys48- and Lys63-linked tri-ubiquitin (K48-K63-Ub3) in complex with synthetic nanobody NbSL3
Descriptor: CHLORIDE ION, GLYCEROL, MAGNESIUM ION, ...
Authors:Lange, S.M, Kulathu, Y.
Deposit date:2021-01-26
Release date:2022-08-10
Last modified:2024-07-31
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:VCP/p97-associated proteins are binders and debranching enzymes of K48-K63-branched ubiquitin chains.
Nat.Struct.Mol.Biol., 2024
7M4O
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BU of 7m4o by Molmil
Crystal structure of phosphorylated RBR E3 ligase RNF216 in complex with K63-linked di-ubiquitin
Descriptor: 2-(2-METHOXYETHOXY)ETHANOL, E3 ubiquitin-protein ligase RNF216, GLYCEROL, ...
Authors:Cotton, T.R, Lechtenberg, B.C.
Deposit date:2021-03-21
Release date:2022-01-05
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Structural basis of K63-ubiquitin chain formation by the Gordon-Holmes syndrome RBR E3 ubiquitin ligase RNF216.
Mol.Cell, 82, 2022
7M4M
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BU of 7m4m by Molmil
Crystal structure of RBR E3 ligase RNF216 with ubiquitin
Descriptor: E3 ubiquitin-protein ligase RNF216, GLYCEROL, Ubiquitin, ...
Authors:Cotton, T.R, Lechtenberg, B.C.
Deposit date:2021-03-21
Release date:2022-01-05
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Structural basis of K63-ubiquitin chain formation by the Gordon-Holmes syndrome RBR E3 ubiquitin ligase RNF216.
Mol.Cell, 82, 2022
7M4N
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BU of 7m4n by Molmil
Crystal structure of RBR E3 ligase RNF216 in complex with K63-linked di-ubiquitin
Descriptor: E3 ubiquitin-protein ligase RNF216, GLYCEROL, SULFATE ION, ...
Authors:Cotton, T.R, Lechtenberg, B.C.
Deposit date:2021-03-21
Release date:2022-01-05
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:Structural basis of K63-ubiquitin chain formation by the Gordon-Holmes syndrome RBR E3 ubiquitin ligase RNF216.
Mol.Cell, 82, 2022
1YIW
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BU of 1yiw by Molmil
X-ray Crystal Structure of a Chemically Synthesized Ubiquitin
Descriptor: CADMIUM ION, CHLORIDE ION, Ubiquitin
Authors:Bang, D, Makhatadze, G.I, Tereshko, V, Kossiakoff, A.A, Kent, S.B.
Deposit date:2005-01-13
Release date:2005-06-14
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:X-ray Crystal Structure of a Chemically Synthesized [D-Gln35]Ubiquitin
Angew.Chem.Int.Ed.Engl., 44, 2005
1V5T
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BU of 1v5t by Molmil
Solution Structure of the Ubiquitin-like Domain from Mouse Hypothetical 8430435I17Rik Protein
Descriptor: 8430435I17Rik Protein
Authors:Zhao, C, Kigawa, T, Tochio, N, Koshiba, S, Inoue, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-11-25
Release date:2004-05-25
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution Structure of the Ubiquitin-like Domain from Mouse Hypothetical 8430435I17Rik Protein
To be Published
1V86
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BU of 1v86 by Molmil
Solution structure of the ubiquitin domain from mouse D7Wsu128e protein
Descriptor: DNA segment, Chr 7, Wayne State University 128, ...
Authors:Tomizawa, T, Kigawa, T, Koshiba, S, Inoue, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-12-29
Release date:2004-06-29
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of the ubiquitin domain from mouse D7Wsu128e protein
To be Published
1XQQ
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BU of 1xqq by Molmil
Simultaneous determination of protein structure and dynamics
Descriptor: ubiquitin
Authors:Lindorff-Larsen, K, Best, R.B, DePristo, M.A, Vendruscolo, M, Dobson, C.M.
Deposit date:2004-10-13
Release date:2005-02-08
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Simultaneous determination of protein structure and dynamics
Nature, 433, 2005
1YQB
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BU of 1yqb by Molmil
Human Ubiquilin 3
Descriptor: Ubiquilin 3
Authors:Walker, J.R, Xue, S, Avvakumov, G.V, Newman, E.M, Mackenzie, F, Sundstrom, M, Arrowsmith, C, Edwards, A, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2005-02-01
Release date:2005-02-08
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Ubiquitin-like domain of Human Ubiquilin 3
To be Published
1Z2M
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BU of 1z2m by Molmil
Crystal Structure of ISG15, the Interferon-Induced Ubiquitin Cross Reactive Protein
Descriptor: OSMIUM 4+ ION, interferon, alpha-inducible protein (clone IFI-15K)
Authors:Narasimhan, J, Wang, M, Fu, Z, Klein, J.M, Haas, A.L, Kim, J.J.
Deposit date:2005-03-08
Release date:2005-05-24
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of the Interferon-induced Ubiquitin-like Protein ISG15.
J.Biol.Chem., 280, 2005
1V5O
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BU of 1v5o by Molmil
Solution Structure of the Ubiquitin-like Domain from Mouse Hypothetical 1700011N24Rik Protein
Descriptor: 1700011N24Rik protein
Authors:Zhao, C, Kigawa, T, Tomizawa, T, Koshiba, S, Inoue, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-11-25
Release date:2004-05-25
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution Structure of the Ubiquitin-like Domain from Mouse Hypothetical 1700011N24Rik Protein
To be Published
1ZKH
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BU of 1zkh by Molmil
Solution structure of a human ubiquitin-like domain in SF3A1
Descriptor: Splicing factor 3 subunit 1
Authors:Lukin, J.A, Dhe-Paganon, S, Guido, V, Lemak, A, Avvakumov, G.V, Xue, S, Newman, E.M, Mackenzie, F, Sundstrom, M, Edwards, A, Arrowsmith, C.H, Structural Genomics Consortium (SGC)
Deposit date:2005-05-02
Release date:2005-05-10
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of a human ubiquitin-like domain in SF3A1
To be Published
2FCQ
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BU of 2fcq by Molmil
X-ray Crystal Structure of a Chemically Synthesized Ubiquitin with a Cubic Space Group
Descriptor: CADMIUM ION, Ubiquitin
Authors:Bang, D, Gribenko, A.V, Tereshko, V, Kossiakoff, A.A, Kent, S.B, Makhatadze, G.I.
Deposit date:2005-12-12
Release date:2006-01-31
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Dissecting the energetics of protein alpha-helix C-cap termination through chemical protein synthesis.
Nat.Chem.Biol., 2, 2006
2FAZ
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BU of 2faz by Molmil
Ubiquitin-Like Domain of Human Nuclear Zinc Finger Protein NP95
Descriptor: Ubiquitin-like containing PHD and RING finger domains protein 1
Authors:Walker, J.R, Wybenga-Groot, L, Doherty, R.S, Finerty Jr, P.J, Newman, E, Mackenzie, F.M, Weigelt, J, Sundstrom, M, Arrowsmith, C, Edwards, A, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2005-12-08
Release date:2005-12-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Ubiquitin-Like Domain of Human Nuclear Zinc Finger Protein NP95
To be Published
2GBR
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BU of 2gbr by Molmil
Crystal Structure of the 35-36 MoaD Insertion Mutant of Ubiquitin
Descriptor: CADMIUM ION, Ubiquitin
Authors:Ferraro, D.M, Ferraro, D.J, Ramaswamy, S, Robertson, A.D.
Deposit date:2006-03-10
Release date:2006-05-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of Ubiquitin Insertion Mutants Support Site-specific Reflex Response to Insertions Hypothesis.
J.Mol.Biol., 359, 2006
2GBK
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BU of 2gbk by Molmil
Crystal Structure of the 9-10 MoaD Insertion Mutant of Ubiquitin
Descriptor: Ubiquitin
Authors:Ferraro, D.M, Ferraro, D.J, Ramaswamy, S, Robertson, A.D.
Deposit date:2006-03-10
Release date:2006-05-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structures of Ubiquitin Insertion Mutants Support Site-specific Reflex Response to Insertions Hypothesis.
J.Mol.Biol., 359, 2006
2HJ8
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BU of 2hj8 by Molmil
Solution NMR structure of the C-terminal domain of the interferon alpha-inducible ISG15 protein from Homo sapiens. Northeast Structural Genomics target HR2873B
Descriptor: Interferon-induced 17 kDa protein
Authors:Aramini, J.M, Ho, C.K, Yin, C, Cunningham, K, Janjua, H, Ma, L.-C, Xiao, R, Acton, T.B, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2006-06-30
Release date:2006-08-01
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution NMR structure of the C-terminal domain of the interferon alpha-inducible ISG15 protein from Homo sapiens. Northeast Structural Genomics target HR2873B.
To be Published
2GBJ
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BU of 2gbj by Molmil
Crystal Structure of the 9-10 8 Glycine Insertion Mutant of Ubiquitin.
Descriptor: Ubiquitin
Authors:Ferraro, D.M, Ferraro, D.J, Ramaswamy, S, Robertson, A.D.
Deposit date:2006-03-10
Release date:2006-05-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structures of Ubiquitin Insertion Mutants Support Site-specific Reflex Response to Insertions Hypothesis.
J.Mol.Biol., 359, 2006
2GBN
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BU of 2gbn by Molmil
Crystal Structure of the 35-36 8 Glycine Insertion Mutant of Ubiquitin
Descriptor: Ubiquitin
Authors:Ferraro, D.M, Ferraro, D.J, Ramaswamy, S, Robertson, A.D.
Deposit date:2006-03-10
Release date:2006-05-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structures of Ubiquitin Insertion Mutants Support Site-specific Reflex Response to Insertions Hypothesis.
J.Mol.Biol., 359, 2006
2GBM
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BU of 2gbm by Molmil
Crystal Structure of the 35-36 8 Glycine Insertion Mutant of Ubiquitin
Descriptor: ARSENIC, Ubiquitin
Authors:Ferraro, D.M, Ferraro, D.J, Ramaswamy, S, Robertson, A.D.
Deposit date:2006-03-10
Release date:2006-05-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structures of Ubiquitin Insertion Mutants Support Site-specific Reflex Response to Insertions Hypothesis.
J.Mol.Biol., 359, 2006
2J7Q
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BU of 2j7q by Molmil
Crystal structure of the ubiquitin-specific protease encoded by murine cytomegalovirus tegument protein M48 in complex with a ubquitin-based suicide substrate
Descriptor: GLYCEROL, MAGNESIUM ION, MCMV TEGUMENT PROTEIN M48 ENCODED UBIQUITIN- SPECIFIC PROTEASE, ...
Authors:Schlieker, C, Weihofen, W.A, Frijns, E, Kattenhorn, L.M, Gaudet, R, Ploegh, H.L.
Deposit date:2006-10-16
Release date:2007-03-20
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of a Herpesvirus-Encoded Cysteine Protease Reveals a Unique Class of Deubiquitinating Enzymes
Mol.Cell, 25, 2007
2K25
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BU of 2k25 by Molmil
Automated NMR Structure of the UBB by FAPSY
Descriptor: UBB
Authors:Lee, W, Jung, J, Lee, W.
Deposit date:2008-03-24
Release date:2008-09-30
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The Automated Suite for Protein Structure by NMR Spectroscopy
To be Published
2K39
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BU of 2k39 by Molmil
Recognition dynamics up to microseconds revealed from RDC derived ubiquitin ensemble in solution
Descriptor: Ubiquitin
Authors:Lange, O.F, Lakomek, N.A, Fares, C, Schroder, G, Walter, K, Becker, S, Meiler, J, Grubmuller, H, Griesinger, C, de Groot, B.L.
Deposit date:2008-04-25
Release date:2008-06-24
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution.
Science, 320, 2008
2JZZ
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BU of 2jzz by Molmil
Solid-State NMR Structure of Microcrystalline Ubiquitin
Descriptor: Ubiquitin
Authors:Manolikas, T, Herrmann, T, Meier, B.H.
Deposit date:2008-01-22
Release date:2008-03-25
Last modified:2024-05-08
Method:SOLID-STATE NMR
Cite:Protein structure determination from 13C spin-diffusion solid-state NMR spectroscopy.
J.Am.Chem.Soc., 130, 2008
2JWZ
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BU of 2jwz by Molmil
Mutations in the hydrophobic core of ubiquitin differentially affect its recognition by receptor proteins
Descriptor: Ubiquitin
Authors:Haririnia, A, Verma, R, Purohit, N, Twarog, M, Deshaies, R, Bolon, D, Fushman, D.
Deposit date:2007-10-31
Release date:2008-01-08
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Mutations in the hydrophobic core of ubiquitin differentially affect its recognition by receptor proteins.
J.Mol.Biol., 375, 2008

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PDB entries from 2024-07-31

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