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PDB: 1676 results

3WP6
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The complex structure of CDBFV E109A with xylotriose
Descriptor: CDBFV, beta-D-xylopyranose-(1-4)-beta-D-xylopyranose, beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose
Authors:Cheng, Y.S, Chen, C.C, Huang, C.H, Huang, T.Y, Ko, T.P, Huang, J.W, Wu, T.H, Liu, J.R, Guo, R.T.
Deposit date:2014-01-09
Release date:2014-03-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Structural analysis of a glycoside hydrolase family 11 xylanase from Neocallimastix patriciarum: insights into the molecular basis of a thermophilic enzyme.
J.Biol.Chem., 289, 2014
3WP4
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The crystal structure of native CDBFV from Neocallimastix patriciarum
Descriptor: CDBFV, SULFATE ION
Authors:Cheng, Y.S, Chen, C.C, Huang, C.H, Huang, T.Y, Ko, T.P, Huang, J.W, Wu, T.H, Liu, J.R, Guo, R.T.
Deposit date:2014-01-09
Release date:2014-03-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:Structural analysis of a glycoside hydrolase family 11 xylanase from Neocallimastix patriciarum: insights into the molecular basis of a thermophilic enzyme.
J.Biol.Chem., 289, 2014
2IKQ
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BU of 2ikq by Molmil
Crystal structure of mouse Sts-1 PGM domain in complex with phosphate
Descriptor: PHOSPHATE ION, Suppressor of T-cell receptor signaling 1
Authors:Chen, Y, Nassar, N.
Deposit date:2006-10-02
Release date:2007-08-14
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.609 Å)
Cite:A Phosphatase Activity of Sts-1 Contributes to the Suppression of TCR Signaling
Mol.Cell, 27, 2007
4IK4
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BU of 4ik4 by Molmil
High resolution structure of GCaMP3 at pH 5.0
Descriptor: CALCIUM ION, RCaMP, Green fluorescent protein
Authors:Chen, Y, Song, X, Miao, L, Zhu, Y, Ji, G.
Deposit date:2012-12-25
Release date:2014-02-05
Last modified:2017-06-21
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Structural insight into enhanced calcium indicator GCaMP3 and GCaMPJ to promote further improvement.
Protein Cell, 4, 2013
4IK3
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BU of 4ik3 by Molmil
High resolution structure of GCaMP3 at pH 8.5
Descriptor: CALCIUM ION, RCaMP, Green fluorescent protein
Authors:Chen, Y, Song, X, Miao, L, Zhu, Y, Ji, G.
Deposit date:2012-12-25
Release date:2014-01-29
Last modified:2017-06-21
Method:X-RAY DIFFRACTION (2.007 Å)
Cite:Structural insight into enhanced calcium indicator GCaMP3 and GCaMPJ to promote further improvement.
Protein Cell, 4, 2013
4IK9
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High resolution structure of GCaMP3 dimer form 2 at pH 7.5
Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, RCaMP, ...
Authors:Chen, Y, Song, X, Miao, L, Zhu, Y, Ji, G.
Deposit date:2012-12-25
Release date:2014-01-29
Last modified:2017-06-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural insight into enhanced calcium indicator GCaMP3 and GCaMPJ to promote further improvement.
Protein Cell, 4, 2013
4IK8
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BU of 4ik8 by Molmil
High resolution structure of GCaMP3 dimer form 1 at pH 7.5
Descriptor: CALCIUM ION, RCaMP, Green fluorescent protein
Authors:Chen, Y, Song, X, Miao, L, Zhu, Y, Ji, G.
Deposit date:2012-12-25
Release date:2014-02-05
Last modified:2017-06-21
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural insight into enhanced calcium indicator GCaMP3 and GCaMPJ to promote further improvement.
Protein Cell, 4, 2013
4IK5
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BU of 4ik5 by Molmil
High resolution structure of Delta-REST-GCaMP3
Descriptor: CALCIUM ION, RCaMP, Green fluorescent protein
Authors:Chen, Y, Song, X, Miao, L, Zhu, Y, Ji, G.
Deposit date:2012-12-25
Release date:2014-01-29
Last modified:2017-06-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural insight into enhanced calcium indicator GCaMP3 and GCaMPJ to promote further improvement.
Protein Cell, 4, 2013
4IK1
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BU of 4ik1 by Molmil
High resolution structure of GCaMPJ at pH 8.5
Descriptor: CALCIUM ION, RCaMP, Green fluorescent protein
Authors:Chen, Y, Song, X, Miao, L, Zhu, Y, Ji, G.
Deposit date:2012-12-25
Release date:2014-02-05
Last modified:2017-06-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural insight into enhanced calcium indicator GCaMP3 and GCaMPJ to promote further improvement.
Protein Cell, 4, 2013
6IZH
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BU of 6izh by Molmil
Crystal structure of deaminase AmnE from Pseudomonas sp. AP-3
Descriptor: 2-aminomuconate deaminase, MAGNESIUM ION
Authors:Chen, Y.J, Chen, Y.P, Su, D.
Deposit date:2018-12-19
Release date:2019-01-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.754 Å)
Cite:A Unique Homo-Hexameric Structure of 2-Aminomuconate Deaminase in the BacteriumPseudomonas species AP-3.
Front Microbiol, 10, 2019
6IMJ
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BU of 6imj by Molmil
The crystal structure of Se-AsfvLIG:DNA complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CADMIUM ION, CHLORIDE ION, ...
Authors:Chen, Y.Q, Gan, J.H.
Deposit date:2018-10-23
Release date:2019-02-27
Method:X-RAY DIFFRACTION (2.554 Å)
Cite:Structure of the error-prone DNA ligase of African swine fever virus identifies critical active site residues.
Nat Commun, 10, 2019
6J67
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Crystal structure of the compound 34 in a complex with TRF2
Descriptor: 3FB-PHE-B8R-LEU-5XU-PRO, Telomeric repeat-binding factor 2
Authors:Chen, Y, Yang, Y, Lei, M.
Deposit date:2019-01-14
Release date:2019-02-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Cyclic Peptidic Mimetics of Apollo Peptides Targeting Telomeric Repeat Binding Factor 2 (TRF2) and Apollo Interaction.
ACS Med Chem Lett, 9, 2018
7OKX
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BU of 7okx by Molmil
Structure of active transcription elongation complex Pol II-DSIF (SPT5-KOW5)-ELL2-EAF1 (composite structure)
Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB1, ...
Authors:Chen, Y, Vos, S.M, Dienemann, C, Ninov, M, Urlaub, H, Cramer, P.
Deposit date:2021-05-18
Release date:2021-07-14
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Allosteric transcription stimulation by RNA polymerase II super elongation complex.
Mol.Cell, 81, 2021
7OL0
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BU of 7ol0 by Molmil
Structure of active transcription elongation complex Pol II-DSIF (SPT5-KOW5)
Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB1, ...
Authors:Chen, Y, Vos, S.M, Dienemann, C, Ninov, M, Urlaub, H, Cramer, P.
Deposit date:2021-05-18
Release date:2021-07-14
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Allosteric transcription stimulation by RNA polymerase II super elongation complex.
Mol.Cell, 81, 2021
7OKY
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BU of 7oky by Molmil
Structure of active transcription elongation complex Pol II-DSIF-ELL2-EAF1(composite structure)
Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB1, ...
Authors:Chen, Y, Vos, S.M, Dienemann, C, Ninov, M, Urlaub, H, Cramer, P.
Deposit date:2021-05-18
Release date:2021-07-14
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (4.14 Å)
Cite:Allosteric transcription stimulation by RNA polymerase II super elongation complex.
Mol.Cell, 81, 2021
7AX1
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BU of 7ax1 by Molmil
Crystal structure of the human CCR4-CAF1 complex
Descriptor: CCR4-NOT transcription complex subunit 6, CCR4-NOT transcription complex subunit 7, MAGNESIUM ION
Authors:Chen, Y, Khazina, E, Weichenrieder, O.
Deposit date:2020-11-09
Release date:2021-05-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Crystal structure and functional properties of the human CCR4-CAF1 deadenylase complex.
Nucleic Acids Res., 49, 2021
6IMK
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BU of 6imk by Molmil
The crystal structure of AsfvLIG:CG complex
Descriptor: DNA (5'-D(*CP*CP*AP*GP*TP*CP*CP*GP*AP*CP*CP*CP*GP*CP*AP*TP*CP*CP*CP*GP*GP*A)-3'), DNA (5'-D(*TP*CP*CP*GP*GP*GP*AP*TP*GP*CP*GP*G)-3'), DNA (5'-D(P*GP*TP*CP*GP*GP*AP*CP*TP*GP*G)-3'), ...
Authors:Chen, Y.Q, Gan, J.H.
Deposit date:2018-10-23
Release date:2019-02-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.502 Å)
Cite:Structure of the error-prone DNA ligase of African swine fever virus identifies critical active site residues.
Nat Commun, 10, 2019
6IMN
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BU of 6imn by Molmil
The crystal structure of AsfvLIG:CT2 complex
Descriptor: CHLORIDE ION, DNA (5'-D(*CP*CP*AP*GP*TP*CP*CP*GP*AP*CP*CP*CP*GP*CP*AP*TP*CP*CP*CP*GP*GP*A)-3'), DNA (5'-D(*TP*CP*CP*GP*GP*GP*AP*TP*GP*CP*GP*TP*GP*TP*CP*GP*GP*AP*CP*TP*GP*G)-3'), ...
Authors:Chen, Y.Q, Gan, J.H.
Deposit date:2018-10-23
Release date:2019-02-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of the error-prone DNA ligase of African swine fever virus identifies critical active site residues.
Nat Commun, 10, 2019
6IML
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BU of 6iml by Molmil
The crystal structure of AsfvLIG:CT1 complex
Descriptor: DNA (5'-D(*CP*CP*AP*GP*TP*CP*CP*GP*AP*CP*CP*CP*GP*CP*AP*TP*CP*CP*CP*GP*GP*A)-3'), DNA (5'-D(*TP*CP*CP*GP*GP*GP*AP*TP*GP*CP*GP*T)-3'), DNA (5'-D(P*GP*TP*CP*GP*GP*AP*CP*TP*GP*G)-3'), ...
Authors:Chen, Y.Q, Gan, J.H.
Deposit date:2018-10-23
Release date:2019-02-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structure of the error-prone DNA ligase of African swine fever virus identifies critical active site residues.
Nat Commun, 10, 2019
6DWS
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BU of 6dws by Molmil
Crystal structure of human GRP78 in complex with (2R,3R,4S,5R)-2-(6-amino-8-((2-chlorobenzyl)amino)-9H-purin-9-yl)-5-(hydroxymethyl)tetrahydrofuran-3,4-diol
Descriptor: 8-{[(2-chlorophenyl)methyl]amino}adenosine, Endoplasmic reticulum chaperone BiP, MAGNESIUM ION
Authors:Chen, Y, Antoshchenko, T, Smil, D, Zepeda, C, Huang, Y, Park, H.W.
Deposit date:2018-06-27
Release date:2019-07-03
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of human GRP78 in complex with (2R,3R,4S,5R)-2-(6-amino-8-((2-chlorobenzyl)amino)-9H-purin-9-yl)-5-(hydroxymethyl)tetrahydrofuran-3,4-diol
To Be Published
4U5J
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BU of 4u5j by Molmil
C-Src in complex with Ruxolitinib
Descriptor: (3R)-3-cyclopentyl-3-[4-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)-1H-pyrazol-1-yl]propanenitrile, Proto-oncogene tyrosine-protein kinase Src
Authors:Chen, Y, Duan, Y, Chen, L.
Deposit date:2014-07-25
Release date:2014-09-17
Last modified:2024-06-26
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:c-Src Binds to the Cancer Drug Ruxolitinib with an Active Conformation
Plos One, 9, 2014
6EBV
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BU of 6ebv by Molmil
Staphylococcus aureus Type II pantothenate kinase in complex with ADP and pantothenate analog Deoxy-N7-Pan
Descriptor: ADENOSINE-5'-DIPHOSPHATE, N-heptyl-N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alaninamide, Type II pantothenate kinase
Authors:Chen, Y, Antoshchenko, T, Strauss, E, Barnard, L, Huang, Y.H, Park, H.
Deposit date:2018-08-07
Release date:2019-08-07
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure-based identification of uncompetitive inhibitors for Staphylococcus aureus pantothenate kinase.
To Be Published
4CRW
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BU of 4crw by Molmil
Complex of human DDX6 (RECA-C) and CNOT1 (MIF4G)
Descriptor: CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 1, GLYCEROL, PROBABLE ATP-DEPENDENT RNA HELICASE DDX6
Authors:Chen, Y, Boland, A, Izaurralde, E, Weichenrieder, O.
Deposit date:2014-03-01
Release date:2014-05-07
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:A Ddx6-Cnot1 Complex and W-Binding Pockets in Cnot9 Reveal Direct Links between Mirna Target Recognition and Silencing
Mol.Cell, 54, 2014
4CRU
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BU of 4cru by Molmil
Complex of human CNOT9 and CNOT1 including one tryptophan
Descriptor: CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 1, CELL DIFFERENTIATION PROTEIN RCD1 HOMOLOG, GLYCEROL
Authors:Chen, Y, Boland, A, Izaurralde, E, Weichenrieder, O.
Deposit date:2014-03-01
Release date:2014-05-07
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:A Ddx6-Cnot1 Complex and W-Binding Pockets in Cnot9 Reveal Direct Links between Mirna Target Recognition and Silencing
Mol.Cell, 54, 2014
4C0E
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BU of 4c0e by Molmil
Structure of the NOT1 superfamily homology domain from Chaetomium thermophilum
Descriptor: NOT1
Authors:Chen, Y, Boland, A, Raisch, T, Jonas, S, Izaurralde, E, Weichenrieder, O.
Deposit date:2013-08-01
Release date:2013-10-09
Last modified:2013-11-20
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure and Assembly of the not Module of the Human Ccr4-not Complex
Nat.Struct.Mol.Biol., 20, 2013

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