Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 173 件

6VGZ
DownloadVisualize
BU of 6vgz by Molmil
2.25 A resolution structure of MERS 3CL protease in complex with inhibitor 6d
分子名称: N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-N~2~-({[trans-4-(propan-2-yl)cyclohexyl]oxy}carbonyl)-L-leucinamide, Orf1a protein
著者Lovell, S, Battaile, K.P, Kashipathy, M.M, Rathnayake, A.D, Zheng, J, Kim, Y, Nguyen, H.N, Chang, K.O, Groutas, W.C.
登録日2020-01-09
公開日2020-08-12
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献3C-like protease inhibitors block coronavirus replication in vitro and improve survival in MERS-CoV-infected mice.
Sci Transl Med, 12, 2020
6W2A
DownloadVisualize
BU of 6w2a by Molmil
1.65 A resolution structure of SARS-CoV 3CL protease in complex with inhibitor 7j
分子名称: (1S,2S)-2-[(N-{[(4,4-difluorocyclohexyl)methoxy]carbonyl}-L-leucyl)amino]-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid, Replicase polyprotein 1a, [4,4-bis(fluoranyl)cyclohexyl]methyl ~{N}-[(2~{S})-1-[[(1~{R},2~{S})-1-[bis(oxidanyl)-oxidanylidene-$l^{5}-sulfanyl]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]carbamate
著者Kashipathy, M.M, Lovell, S, Battaile, K.P, Rathnayake, A.D, Zheng, J, Kim, Y, Nguyen, H.N, Chang, K.O, Groutas, W.C.
登録日2020-03-05
公開日2020-08-12
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献3C-like protease inhibitors block coronavirus replication in vitro and improve survival in MERS-CoV-infected mice.
Sci Transl Med, 12, 2020
5AYW
DownloadVisualize
BU of 5ayw by Molmil
Structure of a membrane complex
分子名称: Outer membrane protein assembly factor BamA, Outer membrane protein assembly factor BamB, Outer membrane protein assembly factor BamC, ...
著者Huang, Y, Han, L, Zheng, J.
登録日2015-09-14
公開日2016-02-24
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (3.555 Å)
主引用文献Structure of the BAM complex and its implications for biogenesis of outer-membrane proteins
Nat.Struct.Mol.Biol., 23, 2016
3CIO
DownloadVisualize
BU of 3cio by Molmil
The kinase domain of Escherichia coli tyrosine kinase ETK
分子名称: CHLORIDE ION, Tyrosine-protein kinase etk
著者Lee, D.C, Zheng, J, Jia, Z.
登録日2008-03-11
公開日2008-06-03
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure of Escherichia coli tyrosine kinase Etk reveals a novel activation mechanism.
Embo J., 27, 2008
2KAW
DownloadVisualize
BU of 2kaw by Molmil
NMR structure of the mDvl1 PDZ domain in complex with its inhibitor
分子名称: Segment polarity protein dishevelled homolog DVL-1, [(1Z)-5-fluoro-2-methyl-1-{4-[methylsulfinyl]benzylidene}-1H-inden-3-yl]acetic acid
著者Lee, H.J, Shao, Y, Wang, N.X, Shi, D.L, Zheng, J.J.
登録日2008-11-17
公開日2009-09-15
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Sulindac inhibits canonical Wnt signaling by blocking the PDZ domain of the protein Dishevelled.
Angew.Chem.Int.Ed.Engl., 48, 2009
2HRJ
DownloadVisualize
BU of 2hrj by Molmil
NMR solution structure of the F2 subdomain of talin
分子名称: Talin-1
著者Liu, G, Arroyo, M.M, Zheng, J.
登録日2006-07-20
公開日2008-04-29
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structural characterization of the talin F2 FERM subdomain with Coenzyme A and PI(4,5)P2
To be Published
6JXR
DownloadVisualize
BU of 6jxr by Molmil
Structure of human T cell receptor-CD3 complex
分子名称: T cell receptor alpha variable 12-3,Possible J 11 gene segment,T cell receptor alpha constant, T cell receptor beta variable 6-5,M1-specific T cell receptor beta chain,T cell receptor beta constant 2, T-cell surface glycoprotein CD3 delta chain, ...
著者Dong, D, Zheng, L, Lin, J, Zhu, Y, Li, N, Zhang, B, Xie, S, Zheng, J, Wang, Y, Gao, N, Huang, Z.
登録日2019-04-24
公開日2019-09-11
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structural basis of assembly of the human T cell receptor-CD3 complex.
Nature, 573, 2019
3Q9I
DownloadVisualize
BU of 3q9i by Molmil
LVFFA segment from Alzheimer's Amyloid-Beta displayed on 42-membered macrocycle scaffold, bromide derivative
分子名称: CHLORIDE ION, Cyclic pseudo-peptide LV(4BF)FA(ORN)(HAO)LK(ORN), GLYCEROL, ...
著者Liu, C, Sawaya, M.R, Eisenberg, D, Nowick, J.S, Cheng, P, Zheng, J.
登録日2011-01-07
公開日2011-06-08
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Characteristics of Amyloid-Related Oligomers Revealed by Crystal Structures of Macrocyclic beta-Sheet Mimics.
J.Am.Chem.Soc., 133, 2011
3Q9G
DownloadVisualize
BU of 3q9g by Molmil
VQIVY segment from Alzheimer's tau displayed on 42-membered macrocycle scaffold
分子名称: ACETIC ACID, Cyclic pseudo-peptide VQIV(4BF)(ORN)(HAO)KL(ORN), GLYCEROL
著者Liu, C, Sawaya, M.R, Eisenberg, D, Nowick, J.S, Cheng, P, Zheng, J.
登録日2011-01-07
公開日2011-06-08
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Characteristics of Amyloid-Related Oligomers Revealed by Crystal Structures of Macrocyclic beta-Sheet Mimics.
J.Am.Chem.Soc., 133, 2011
3Q9J
DownloadVisualize
BU of 3q9j by Molmil
AIIFL segment derived from Alzheimer's Amyloid-Beta displayed on 42-membered macrocycle scaffold
分子名称: CHLORIDE ION, Cyclic pseudo-peptide AIIFL(ORN)(HAO)YK(ORN), GLYCEROL, ...
著者Liu, C, Sawaya, M.R, Eisenberg, D, Nowick, J.S, Cheng, P, Zheng, J.
登録日2011-01-07
公開日2011-06-08
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Characteristics of Amyloid-Related Oligomers Revealed by Crystal Structures of Macrocyclic beta-Sheet Mimics.
J.Am.Chem.Soc., 133, 2011
3Q9H
DownloadVisualize
BU of 3q9h by Molmil
LVFFA segment from Alzheimer's Amyloid-Beta displayed on 42-membered macrocycle scaffold
分子名称: 1,4-BUTANEDIOL, Cyclic pseudo-peptide LVFFA(ORN)(HAO)LK(ORN), GLYCEROL, ...
著者Liu, C, Sawaya, M.R, Eisenberg, D, Nowick, J.S, Cheng, P, Zheng, J.
登録日2011-01-07
公開日2011-06-08
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Characteristics of Amyloid-Related Oligomers Revealed by Crystal Structures of Macrocyclic beta-Sheet Mimics.
J.Am.Chem.Soc., 133, 2011
2LK4
DownloadVisualize
BU of 2lk4 by Molmil
Structural and mechanistic insights into the interaction between PAT Pyk2 and Paxillin LD motif
分子名称: Protein-tyrosine kinase 2-beta
著者Vanarotti, M, Miller, D, Guibao, C, Zheng, J.
登録日2011-10-04
公開日2012-10-10
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structural and Mechanistic Insights into the Interaction between Pyk2 and Paxillin LD Motifs.
J.Mol.Biol., 426, 2014
6LB7
DownloadVisualize
BU of 6lb7 by Molmil
Crystal structure of the Ca2+-free and Ca2+-bound MICU1-MICU2 complex
分子名称: CALCIUM ION, Calcium uptake protein 1, mitochondrial, ...
著者Wu, W, Shen, Q, Zheng, J, Jia, Z.
登録日2019-11-13
公開日2020-07-15
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.101 Å)
主引用文献The structure of the MICU1-MICU2 complex unveils the regulation of the mitochondrial calcium uniporter.
Embo J., 39, 2020
6LB8
DownloadVisualize
BU of 6lb8 by Molmil
Crystal structure of the Ca2+-free T4L-MICU1-MICU2 complex
分子名称: Calcium uptake protein 2, mitochondrial, Endolysin,Calcium uptake protein 1
著者Wu, W, Shen, Q, Zheng, J, Jia, Z.
登録日2019-11-13
公開日2020-07-15
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.283 Å)
主引用文献The structure of the MICU1-MICU2 complex unveils the regulation of the mitochondrial calcium uniporter.
Embo J., 39, 2020
8H8C
DownloadVisualize
BU of 8h8c by Molmil
Type VI secretion system effector RhsP in its post-autoproteolysis and dimeric form
分子名称: C-terminal peptide from Putative Rhs-family protein, Putative Rhs-family protein
著者Tang, L, Dong, S.Q, Rasheed, N, Wu, H.W, Zhou, N.K, Li, H.D, Wang, M.L, Zheng, J, He, J, Chao, W.C.H.
登録日2022-10-22
公開日2023-01-18
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.36 Å)
主引用文献Vibrio parahaemolyticus prey targeting requires autoproteolysis-triggered dimerization of the type VI secretion system effector RhsP.
Cell Rep, 41, 2022
8H8B
DownloadVisualize
BU of 8h8b by Molmil
Type VI secretion system effector RhsP in its pre-autoproteolysis and monomeric form
分子名称: Putative Rhs-family protein
著者Tang, L, Dong, S.Q, Rasheed, N, Wu, H.W, Zhou, N.K, Li, H.D, Wang, M.L, Zheng, J, He, J, Chao, W.C.H.
登録日2022-10-22
公開日2023-01-18
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.16 Å)
主引用文献Vibrio parahaemolyticus prey targeting requires autoproteolysis-triggered dimerization of the type VI secretion system effector RhsP.
Cell Rep, 41, 2022
8H8A
DownloadVisualize
BU of 8h8a by Molmil
Type VI secretion system effector RhsP in its post-autoproteolysis and monomeric form
分子名称: C-terminal peptide from Putative Rhs-family protein, Putative Rhs-family protein
著者Tang, L, Dong, S.Q, Rasheed, N, Wu, H.W, Zhou, N.K, Li, H.D, Wang, M.L, Zheng, J, He, J, Chao, W.C.H.
登録日2022-10-22
公開日2023-01-18
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.25 Å)
主引用文献Vibrio parahaemolyticus prey targeting requires autoproteolysis-triggered dimerization of the type VI secretion system effector RhsP.
Cell Rep, 41, 2022
2MAH
DownloadVisualize
BU of 2mah by Molmil
Solution structure of Smoothened
分子名称: Protein smoothened
著者Rana, R, Lee, H, Zheng, J.J.
登録日2013-07-09
公開日2014-03-05
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Structural insights into the role of the Smoothened cysteine-rich domain in Hedgehog signalling.
Nat Commun, 4, 2013
8IA9
DownloadVisualize
BU of 8ia9 by Molmil
SpnK Methyltransferase from the Spinosyn Biosynthetic Pathway in Complex with Mg
分子名称: Demethylmacrocin O-methyltransferase, MAGNESIUM ION
著者Huang, S, Zheng, J.
登録日2023-02-08
公開日2023-09-27
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural and computational insights into the regioselectivity of SpnK involved in rhamnose methylation of spinosyn.
Int.J.Biol.Macromol., 253, 2023
8IAA
DownloadVisualize
BU of 8iaa by Molmil
SpnK Methyltransferase from the Spinosyn Biosynthetic Pathway in Complex with SAH
分子名称: Demethylmacrocin O-methyltransferase, MAGNESIUM ION, S-ADENOSYL-L-HOMOCYSTEINE
著者Huang, S, Zheng, J.
登録日2023-02-08
公開日2023-09-27
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural and computational insights into the regioselectivity of SpnK involved in rhamnose methylation of spinosyn.
Int.J.Biol.Macromol., 253, 2023
8HVR
DownloadVisualize
BU of 8hvr by Molmil
Cryo-EM structure of AfsR-dependent transcription activation complex with afsS promoter
分子名称: DNA (65-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
著者Wang, Y, Zheng, J.
登録日2022-12-27
公開日2023-12-27
最終更新日2024-04-03
実験手法ELECTRON MICROSCOPY (3.35 Å)
主引用文献Structural and functional characterization of AfsR, an SARP family transcriptional activator of antibiotic biosynthesis in Streptomyces.
Plos Biol., 22, 2024
2MX6
DownloadVisualize
BU of 2mx6 by Molmil
Complex structure of Dvl PDZ domain with ligand
分子名称: (PHQ)WV peptide, Segment polarity protein dishevelled homolog DVL-1
著者Zhang, X, Zheng, J.J.
登録日2014-12-15
公開日2015-12-30
最終更新日2024-10-30
実験手法SOLUTION NMR
主引用文献Protein-ligand interaction decoded by NMR chemical shift analysis
To be Published
2L6F
DownloadVisualize
BU of 2l6f by Molmil
NMR Solution structure of FAT domain of FAK complexed with LD2 and LD4 motifs of PAXILLIN
分子名称: Focal adhesion kinase 1, linker1, Paxillin, ...
著者Bertolucci, C.M, Guibao, C, Zhang, C, Zheng, J.
登録日2010-11-19
公開日2012-05-30
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献NMR Solution Structure of Fat Domain of Fak Complexed with Ld2 and Ld4 Motifs of Paxillin
To be Published
2L6H
DownloadVisualize
BU of 2l6h by Molmil
Fat domain of focal adhesion kinase tethered to LD4 motif of paxillin via GGS linker
分子名称: Focal adhesion kinase 1, linker, Paxillin
著者Bertolucci, C.M, Guibao, C, Zhang, C, Zheng, J.
登録日2010-11-19
公開日2012-05-30
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Fat Domain of Focal Adhesion Kinase Tethered to Ld4 Motif of Paxillin via GGS Linker
To be Published
6ISL
DownloadVisualize
BU of 6isl by Molmil
SnoaL-like cyclase XimE with its product xiamenmycin B
分子名称: (2R,3S)-2-methyl-2-(4-methylpent-3-enyl)-3-oxidanyl-3,4-dihydrochromene-6-carboxylic acid, XimE, SnoaL-like domain protein
著者He, B, Zhou, T, Bu, X, Weng, J, Xu, J, Lin, S, Zheng, J, Zhao, Y, Xu, M.
登録日2018-11-16
公開日2019-11-20
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Enzymatic Pyran Formation Involved in Xiamenmycin Biosynthesis
Acs Catalysis, 9, 2019

226707

件を2024-10-30に公開中

PDB statisticsPDBj update infoContact PDBjnumon