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PDB: 873 results

5A9G
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BU of 5a9g by Molmil
Manganese Superoxide Dismutase from Sphingobacterium sp. T2
Descriptor: MANGANESE (II) ION, MANGANESE SUPEROXIDE DISMUTASE
Authors:Rashid, G.M.M, Taylor, C.R, Liu, Y, Zhang, X, Rea, D, Fulop, V, Bugg, T.D.H.
Deposit date:2015-07-21
Release date:2015-08-05
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Identification of Manganese Superoxide Dismutase from Sphingobacterium Sp. T2 as a Novel Bacterial Enzyme for Lignin Oxidation.
Acs Chem.Biol., 10, 2015
8II0
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BU of 8ii0 by Molmil
FACTOR INHIBITING HIF-1 ALPHA in complex with (5-(3-(3-chlorophenyl)isoxazol-5-yl)-3-hydroxypicolinoyl)glycine
Descriptor: 2-[[5-[3-(3-chlorophenyl)-1,2-oxazol-5-yl]-3-oxidanyl-pyridin-2-yl]carbonylamino]ethanoic acid, GLYCEROL, Hypoxia-inducible factor 1-alpha inhibitor, ...
Authors:Nakashima, Y, Corner, T, Zhang, X, Schofield, C.J.
Deposit date:2023-02-24
Release date:2024-02-28
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:A Small-Molecule Inhibitor of Factor Inhibiting HIF Binding to a Tyrosine-flip Pocket for the Treatment of Obesity.
Angew.Chem.Int.Ed.Engl., 2024
8IHZ
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BU of 8ihz by Molmil
FACTOR INHIBITING HIF-1 ALPHA in complex with (5-(1-(3-(4-chlorophenyl)propyl)-1H-1,2,3-triazol-4-yl)-3-hydroxypicolinoyl)glycine
Descriptor: 2-[[5-[1-[3-(4-chlorophenyl)propyl]-1,2,3-triazol-4-yl]-3-oxidanyl-pyridin-2-yl]carbonylamino]ethanoic acid, Hypoxia-inducible factor 1-alpha inhibitor, SULFATE ION, ...
Authors:Nakashima, Y, Corner, T, Zhang, X, Schofield, C.J.
Deposit date:2023-02-24
Release date:2024-02-28
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:A Small-Molecule Inhibitor of Factor Inhibiting HIF Binding to a Tyrosine-flip Pocket for the Treatment of Obesity.
Angew.Chem.Int.Ed.Engl., 2024
8EW2
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BU of 8ew2 by Molmil
Cryo-EM structure of Aldolase embedded in crystalline ice
Descriptor: Fructose-bisphosphate aldolase A
Authors:Shi, H, Wu, C, Zhang, X.
Deposit date:2022-10-21
Release date:2023-01-11
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Addressing compressive deformation of proteins embedded in crystalline ice.
Structure, 31, 2023
8F49
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BU of 8f49 by Molmil
1.8 angstrom structure of apoferritin embedded in crystalline ice
Descriptor: Ferritin heavy chain
Authors:Shi, H, Wu, C, Zhang, X.
Deposit date:2022-11-10
Release date:2023-01-11
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (1.8 Å)
Cite:Addressing compressive deformation of proteins embedded in crystalline ice.
Structure, 31, 2023
8F7Y
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BU of 8f7y by Molmil
Structure of Coxsackievirus A10 frozen at -183 degree embedded in crystalline ice
Descriptor: Genome polyprotein
Authors:Shi, H, Wu, C, Zhang, X.
Deposit date:2022-11-21
Release date:2023-01-11
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Addressing compressive deformation of proteins embedded in crystalline ice.
Structure, 31, 2023
8EW0
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BU of 8ew0 by Molmil
Cryo-EM structure of glutamate dehydrogenase frozen at various temperature
Descriptor: Glutamate dehydrogenase 1, mitochondrial
Authors:Shi, H, Wu, C, Zhang, X.
Deposit date:2022-10-21
Release date:2023-01-11
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Addressing compressive deformation of proteins embedded in crystalline ice.
Structure, 31, 2023
3EHQ
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BU of 3ehq by Molmil
Crystal Structure of Human Osteoclast Stimulating Factor
Descriptor: 1,2-ETHANEDIOL, Osteoclast-stimulating factor 1
Authors:Tong, S, Zhou, H, Gao, Y, Zhu, Z, Zhang, X, Teng, M, Niu, L.
Deposit date:2008-09-14
Release date:2009-08-04
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Crystal structure of human osteoclast stimulating factor
Proteins, 75, 2009
2GZY
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BU of 2gzy by Molmil
solution structures of the reduced form of thioredoxin from Bacillus subtilis
Descriptor: Thioredoxin
Authors:Xu, H, Zhang, X, Chen, J, Jin, C.
Deposit date:2006-05-12
Release date:2007-02-13
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Conformational fluctuations coupled to the thiol-disulfide transfer between thioredoxin and arsenate reductase in Bacillus subtilis.
J.Biol.Chem., 282, 2007
4LT5
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BU of 4lt5 by Molmil
Structure of a Naegleria Tet-like dioxygenase in complex with 5-methylcytosine DNA
Descriptor: 1,2-ETHANEDIOL, DNA, MANGANESE (II) ION, ...
Authors:Hashimoto, H, Pais, J.E, Zhang, X, Saleh, L, Fu, Z.Q, Dai, N, Correa, I.R, Roberts, R.J, Zheng, Y, Cheng, X.
Deposit date:2013-07-23
Release date:2013-12-18
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.893 Å)
Cite:Structure of a Naegleria Tet-like dioxygenase in complex with 5-methylcytosine DNA.
Nature, 506, 2014
2GZZ
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BU of 2gzz by Molmil
solution structures of the oxidized form of thioredoxin from Bacillus subtilis
Descriptor: thioredoxin
Authors:Xu, H, Zhang, X, Chen, J, Jin, C.
Deposit date:2006-05-12
Release date:2007-02-13
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:Conformational fluctuations coupled to the thiol-disulfide transfer between thioredoxin and arsenate reductase in Bacillus subtilis.
J.Biol.Chem., 282, 2007
4M9E
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BU of 4m9e by Molmil
Structure of Klf4 zinc finger DNA binding domain in complex with methylated DNA
Descriptor: ACETATE ION, DNA (5'-D(*GP*AP*GP*GP*(5CM)P*GP*TP*GP*GP*C)-3'), DNA (5'-D(*GP*CP*CP*AP*(5CM)P*GP*CP*CP*TP*C)-3'), ...
Authors:Liu, Y, Olanrewaju, Y.O, Blumenthal, R.M, Zhang, X, Cheng, X.
Deposit date:2013-08-14
Release date:2014-02-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.851 Å)
Cite:Structural basis for Klf4 recognition of methylated DNA.
Nucleic Acids Res., 42, 2014
5E6P
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BU of 5e6p by Molmil
PlexinB2 cytoplasmic region/PDZ-RhoGEF PDZ domain complex
Descriptor: Plexin-B2, Rho guanine nucleotide exchange factor 11
Authors:Pascoe, H.G, Zhang, X.
Deposit date:2015-10-10
Release date:2015-11-18
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.215 Å)
Cite:Secondary PDZ domain-binding site on class B plexins enhances the affinity for PDZ-RhoGEF.
Proc.Natl.Acad.Sci.USA, 112, 2015
3GT8
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BU of 3gt8 by Molmil
Crystal structure of the inactive EGFR kinase domain in complex with AMP-PNP
Descriptor: Epidermal growth factor receptor, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Jura, N, Endres, N.F, Engel, K, Deindl, S, Das, R, Lamers, M.H, Wemmer, D.E, Zhang, X, Kuriyan, J.
Deposit date:2009-03-27
Release date:2009-07-21
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.955 Å)
Cite:Mechanism for activation of the EGF receptor catalytic domain by the juxtamembrane segment.
Cell(Cambridge,Mass.), 137, 2009
8F4L
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BU of 8f4l by Molmil
Structure of human apoferritin embedded in crystalline ice
Descriptor: Ferritin heavy chain
Authors:Shi, H, Wu, C, Zhang, X.
Deposit date:2022-11-11
Release date:2024-06-19
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Addressing Compressive Deformation of Proteins Embedded in Crystalline Ice
To Be Published
2H3D
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BU of 2h3d by Molmil
Crystal Structure of Mouse Nicotinamide Phosphoribosyltransferase/Visfatin/Pre-B Cell Colony Enhancing Factor in Complex with Nicotinamide Mononuleotide
Descriptor: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, Nicotinamide phosphoribosyltransferase
Authors:Wang, T, Zhang, X, Bheda, P, Revollo, J.R, Imai, S.I, Wolberger, C.
Deposit date:2006-05-22
Release date:2006-06-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of Nampt/PBEF/visfatin, a mammalian NAD(+) biosynthetic enzyme.
Nat.Struct.Mol.Biol., 13, 2006
5BOE
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BU of 5boe by Molmil
Crystal structure of Staphylococcus aureus enolase in complex with PEP
Descriptor: Enolase, GLYCEROL, MAGNESIUM ION, ...
Authors:Wang, C.L, Wu, Y.F, Han, L, Wu, M.H, Zhang, X, Zang, J.Y.
Deposit date:2015-05-27
Release date:2015-12-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Octameric structure of Staphylococcus aureus enolase in complex with phosphoenolpyruvate
Acta Crystallogr.,Sect.D, 71, 2015
2K2V
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BU of 2k2v by Molmil
Anabaena CcbP in the calcium-bound form
Descriptor: Alr1010 protein, CALCIUM ION
Authors:Hu, Y, Zhang, X, Jin, C.
Deposit date:2008-04-13
Release date:2009-04-21
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Anabaena CcbP in the calcium-bound form
To be Published
3UT7
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BU of 3ut7 by Molmil
Structural view of a non Pfam singleton and crystal packing analysis
Descriptor: Putative uncharacterized protein, SULFATE ION
Authors:Cheng, C, Shaw, N, Zhang, X, Zhang, M, Ding, W, Wang, B.C, Liu, Z.J.
Deposit date:2011-11-25
Release date:2012-03-28
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Structural view of a non pfam singleton and crystal packing analysis.
Plos One, 7, 2012
3UT8
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BU of 3ut8 by Molmil
Structural view of a non Pfam singleton and crystal packing analysis
Descriptor: IODIDE ION, Putative uncharacterized protein
Authors:Cheng, C, Shaw, N, Zhang, X, Zhang, M, Ding, W, Wang, B.C, Liu, Z.J.
Deposit date:2011-11-25
Release date:2012-03-28
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.168 Å)
Cite:Structural view of a non pfam singleton and crystal packing analysis.
Plos One, 7, 2012
3UT4
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BU of 3ut4 by Molmil
Structural view of a non Pfam singleton and crystal packing analysis
Descriptor: Putative uncharacterized protein
Authors:Cheng, C, Shaw, N, Zhang, X, Zhang, M, Ding, W, Wang, B.C, Liu, Z.J.
Deposit date:2011-11-25
Release date:2012-03-28
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Structural view of a non pfam singleton and crystal packing analysis.
Plos One, 7, 2012
2L37
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BU of 2l37 by Molmil
3D solution structure of arginine/glutamate-rich polypeptide Luffin P1 from the seeds of sponge gourd (Luffa cylindrical)
Descriptor: Ribosome-inactivating protein luffin P1
Authors:Ng, Y.M, Yang, Y, Sze, K.H, Zhang, X, Zheng, Y.T, Shaw, P.C.
Deposit date:2010-09-08
Release date:2011-01-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural characterization and anti-HIV-1 activities of arginine/glutamate-rich polypeptide Luffin P1 from the seeds of sponge gourd (Luffa cylindrical).
J.Struct.Biol., 2010
8FLK
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BU of 8flk by Molmil
Cryo-EM structure of STING oligomer bound to cGAMP and NVS-STG2
Descriptor: 4-({[4-(2-tert-butyl-5,5-dimethyl-1,3-dioxan-2-yl)phenyl]methyl}amino)-3-methoxybenzoic acid, Stimulator of interferon genes protein, cGAMP
Authors:Li, J, Canham, S.M, Zhang, X, Bai, X, Feng, Y.
Deposit date:2022-12-21
Release date:2023-11-01
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Activation of human STING by a molecular glue-like compound.
Nat.Chem.Biol., 20, 2024
8FLM
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BU of 8flm by Molmil
Cryo-EM structure of STING oligomer bound to cGAMP, NVS-STG2 and C53
Descriptor: 1-[(2-chloro-6-fluorophenyl)methyl]-3,3-dimethyl-2-oxo-N-[(2,4,6-trifluorophenyl)methyl]-2,3-dihydro-1H-indole-6-carboxamide, 4-({[4-(2-tert-butyl-5,5-dimethyl-1,3-dioxan-2-yl)phenyl]methyl}amino)-3-methoxybenzoic acid, Stimulator of interferon genes protein, ...
Authors:Li, J, Canham, S.M, Zhang, X, Bai, X, Feng, Y.
Deposit date:2022-12-21
Release date:2023-11-01
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Activation of human STING by a molecular glue-like compound.
Nat.Chem.Biol., 20, 2024
8H3G
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BU of 8h3g by Molmil
Crystal Structure of SARS-CoV-2 Main Protease (Mpro) E166V Mutant in Complex with Inhibitor Enstrelvir
Descriptor: 3C-like proteinase nsp5, 6-[(6-chloranyl-2-methyl-indazol-5-yl)amino]-3-[(1-methyl-1,2,4-triazol-3-yl)methyl]-1-[[2,4,5-tris(fluoranyl)phenyl]methyl]-1,3,5-triazine-2,4-dione, GLYCEROL
Authors:Wang, H, Lin, M, Duan, Y, Zhang, X, Zhou, H, Bian, Q, Liu, X, Rao, Z, Yang, H.
Deposit date:2022-10-08
Release date:2023-10-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Molecular mechanisms of SARS-CoV-2 resistance to nirmatrelvir.
Nature, 622, 2023

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PDB entries from 2024-07-17

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