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PDB: 342 results

5TF2
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BU of 5tf2 by Molmil
CRYSTAL STRUCTURE OF THE WD40 DOMAIN OF THE HUMAN PROLACTIN REGULATORY ELEMENT-BINDING PROTEIN
Descriptor: Prolactin regulatory element-binding protein, UNKNOWN ATOM OR ION
Authors:Walker, J.R, Zhang, Q, Dong, A, Wernimont, A, Li, Y, He, H, Tempel, W, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Chen, Z, Tong, Y, Structural Genomics Consortium (SGC)
Deposit date:2016-09-23
Release date:2016-11-23
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:CRYSTAL STRUCTURE OF THE WD40 DOMAIN OF THE HUMAN PROLACTIN REGULATORY ELEMENT-BINDING PROTEIN (CASP target)
To be published
5X0R
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BU of 5x0r by Molmil
Crystal Structure of PXR LBD Complexed with SJB7
Descriptor: 4-[(4-tert-butylphenyl)sulfonyl]-1-(2,4-dimethoxy-5-methylphenyl)-5-methyl-1H-1,2,3-triazole, Nuclear receptor coactivator 1, Nuclear receptor subfamily 1 group I member 2
Authors:Lv, L, Lin, W, Chai, S.C, Zhang, Q, Chen, T.
Deposit date:2017-01-23
Release date:2017-10-04
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.665 Å)
Cite:SPA70 is a potent antagonist of human pregnane X receptor.
Nat Commun, 8, 2017
5WCH
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BU of 5wch by Molmil
Crystal structure of the catalytic domain of human USP9X
Descriptor: Probable ubiquitin carboxyl-terminal hydrolase FAF-X, UNKNOWN ATOM OR ION, ZINC ION
Authors:Dong, A, Zhang, Q, Walker, J.R, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Tong, Y, Structural Genomics Consortium (SGC)
Deposit date:2017-06-30
Release date:2018-07-04
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure and activity-based labeling reveal the mechanisms for linkage-specific substrate recognition by deubiquitinase USP9X.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
7XF3
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BU of 7xf3 by Molmil
The structure of HLA-B*1501/BM58-66AF9
Descriptor: 9-mer peptide from Matrix protein 1, Beta-2-microglobulin, MHC class I antigen
Authors:Zhao, Y.Z, Xiao, W.L, Wu, Y.N, Fan, W.F, Yue, C, Zhang, Q.X, Zhang, D.N, Yuan, X.J, Yao, S.J, Liu, S, Li, M, Wang, P.Y, Zhang, H.J, Zhang, J, Zhao, M, Zheng, X.Q, Liu, W.J, Gao, G.F, Liu, W.L.
Deposit date:2022-03-31
Release date:2023-02-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Parallel T Cell Immunogenic Regions in Influenza B and A Viruses with Distinct Nuclear Export Signal Functions: The Balance between Viral Life Cycle and Immune Escape.
J Immunol., 210, 2023
7C81
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E30 F-particle in complex with 6C5
Descriptor: Heavy chain, Light chain, SPHINGOSINE, ...
Authors:Wang, K, Zheng, B, Zhang, L, Cui, L, Su, X, Zhang, Q, Guo, Y, Zhu, L, Zhu, F, Rao, Z, Wang, X.
Deposit date:2020-05-28
Release date:2020-07-29
Last modified:2020-09-16
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Serotype specific epitopes identified by neutralizing antibodies underpin immunogenic differences in Enterovirus B.
Nat Commun, 11, 2020
7C80
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BU of 7c80 by Molmil
E30 F-particle in complex with 4B10
Descriptor: Heavy chain, Light chain, SPHINGOSINE, ...
Authors:Wang, K, Zheng, B, Zhang, L, Cui, L, Su, X, Zhang, Q, Guo, Y, Zhu, L, Zhu, F, Rao, Z, Wang, X.
Deposit date:2020-05-28
Release date:2020-07-29
Last modified:2020-09-16
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Serotype specific epitopes identified by neutralizing antibodies underpin immunogenic differences in Enterovirus B.
Nat Commun, 11, 2020
8ZLE
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BU of 8zle by Molmil
hAE3NTD2TMD with PT5,CLR, and Y01
Descriptor: CHOLESTEROL, CHOLESTEROL HEMISUCCINATE, [(2R)-1-octadecanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phospho ryl]oxy-propan-2-yl] (8Z)-icosa-5,8,11,14-tetraenoate, ...
Authors:Jian, L, Zhang, Q, Yao, D, Wang, Q, Xia, Y, Qin, A, Cao, Y.
Deposit date:2024-05-19
Release date:2024-07-31
Last modified:2024-08-07
Method:ELECTRON MICROSCOPY (3.35 Å)
Cite:The structural insight into the functional modulation of human anion exchanger 3.
Nat Commun, 15, 2024
8I8A
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BU of 8i8a by Molmil
Cryo-EM structure of the major capsid protein VP39 of Autographa californica multiple nucleopolyhedrovirus (AcMNPV)
Descriptor: Major viral capsid protein
Authors:Jia, X, Zhang, Q.
Deposit date:2023-02-03
Release date:2023-12-13
Method:ELECTRON MICROSCOPY (3.21 Å)
Cite:Architecture of the baculovirus nucleocapsid revealed by cryo-EM.
Nat Commun, 14, 2023
8I8C
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BU of 8i8c by Molmil
Plug structure of the Autographa californica multiple nucleopolyhedrovirus (AcMNPV)
Descriptor: Occlusion-derived virus envelope/capsid protein, P40
Authors:Jia, X, Gao, Y, Zhang, Q.
Deposit date:2023-02-03
Release date:2023-12-13
Method:ELECTRON MICROSCOPY (4.93 Å)
Cite:Architecture of the baculovirus nucleocapsid revealed by cryo-EM.
Nat Commun, 14, 2023
8I8B
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BU of 8i8b by Molmil
Outer shell and inner layer structures of Autographa californica multiple nucleopolyhedrovirus (AcMNPV)
Descriptor: 38K, AcOrf-109 peptide, Early 49 Daa protein, ...
Authors:Jia, X, Gao, Y, Zhang, Q.
Deposit date:2023-02-03
Release date:2023-12-13
Method:ELECTRON MICROSCOPY (4.31 Å)
Cite:Architecture of the baculovirus nucleocapsid revealed by cryo-EM.
Nat Commun, 14, 2023
8Y8K
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BU of 8y8k by Molmil
The structure of hAE3
Descriptor: Anion exchange protein 3
Authors:Jian, L, Zhang, Q, Yao, D, Wang, Q, Xia, Y, Qin, A, Cao, Y.
Deposit date:2024-02-06
Release date:2024-07-31
Last modified:2024-08-07
Method:ELECTRON MICROSCOPY (2.89 Å)
Cite:The structural insight into the functional modulation of human anion exchanger 3.
Nat Commun, 15, 2024
8Y85
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BU of 8y85 by Molmil
Human AE3 with NaHCO3- and DIDS
Descriptor: 2,2'-ethane-1,2-diylbis{5-[(sulfanylmethyl)amino]benzenesulfonic acid}, Anion exchange protein 3, BICARBONATE ION
Authors:Jian, L, Zhang, Q, Yao, D, Wang, Q, Xia, Y, Qin, A, Cao, Y.
Deposit date:2024-02-05
Release date:2024-07-31
Last modified:2024-08-07
Method:ELECTRON MICROSCOPY (2.73 Å)
Cite:The structural insight into the functional modulation of human anion exchanger 3.
Nat Commun, 15, 2024
8Y86
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BU of 8y86 by Molmil
Human AE3 with NaHCO3-
Descriptor: Anion exchange protein 3, BICARBONATE ION
Authors:Jian, L, Zhang, Q, Yao, D, Cao, Y.
Deposit date:2024-02-06
Release date:2024-07-31
Last modified:2024-08-07
Method:ELECTRON MICROSCOPY (2.75 Å)
Cite:The structural insight into the functional modulation of human anion exchanger 3.
Nat Commun, 15, 2024
8JON
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BU of 8jon by Molmil
Structure of a synthetic circadian clock protein KaiC mutant of cyanobacteria Synechococcus elongatus PCC 7942
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Circadian clock oscillator protein KaiC, ...
Authors:Jia, X, Zhang, Q, Li, S, Guo, J.
Deposit date:2023-06-07
Release date:2024-06-12
Method:ELECTRON MICROSCOPY (2.51 Å)
Cite:Adaptation of ancient cyanobacterial clock to the day length ~ 0.95 Ga ago
To Be Published
7D54
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BU of 7d54 by Molmil
Crstal structure MsGATase with Gln
Descriptor: GLUTAMINE, Glutamine amidotransferase class-I
Authors:Chen, Y, Zhang, Q, Bartlam, M.
Deposit date:2020-09-24
Release date:2021-10-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure and mechanism of the gamma-glutamyl-gamma-aminobutyrate hydrolase SpuA from Pseudomonas aeruginosa.
Acta Crystallogr D Struct Biol, 77, 2021
7D4R
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BU of 7d4r by Molmil
SpuA native structure
Descriptor: MAGNESIUM ION, Probable glutamine amidotransferase
Authors:Chen, Y, Zhang, Q, Bartlam, M.
Deposit date:2020-09-24
Release date:2021-10-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure and mechanism of the gamma-glutamyl-gamma-aminobutyrate hydrolase SpuA from Pseudomonas aeruginosa.
Acta Crystallogr D Struct Biol, 77, 2021
7D53
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BU of 7d53 by Molmil
SpuA mutant - H221N with Glu
Descriptor: GLUTAMIC ACID, MAGNESIUM ION, Probable glutamine amidotransferase
Authors:Chen, Y, Zhang, Q, Bartlam, M.
Deposit date:2020-09-24
Release date:2021-10-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure and mechanism of the gamma-glutamyl-gamma-aminobutyrate hydrolase SpuA from Pseudomonas aeruginosa.
Acta Crystallogr D Struct Biol, 77, 2021
7D50
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BU of 7d50 by Molmil
SpuA mutant - H221N with glutamyl-thioester
Descriptor: MAGNESIUM ION, Probable glutamine amidotransferase
Authors:Chen, Y, Zhang, Q, Bartlam, M.
Deposit date:2020-09-24
Release date:2021-10-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structure and mechanism of the gamma-glutamyl-gamma-aminobutyrate hydrolase SpuA from Pseudomonas aeruginosa.
Acta Crystallogr D Struct Biol, 77, 2021
8W9W
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BU of 8w9w by Molmil
The cryo-EM structure of human sphingomyelin synthase-related protein in complex with ceramide/phosphoethanolamine
Descriptor: PHOSPHORIC ACID MONO-(2-AMINO-ETHYL) ESTER, Sphingomyelin synthase-related protein 1, ~{N}-[(~{Z},2~{S},3~{R})-1,3-bis(oxidanyl)heptadec-4-en-2-yl]dodecanamide
Authors:Hu, K, Zhang, Q, Chen, Y, Yao, D, Zhou, L, Cao, Y.
Deposit date:2023-09-06
Release date:2024-02-28
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.74 Å)
Cite:Cryo-EM structure of human sphingomyelin synthase and its mechanistic implications for sphingomyelin synthesis.
Nat.Struct.Mol.Biol., 31, 2024
8W9Y
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BU of 8w9y by Molmil
The cryo-EM structure of human sphingomyelin synthase-related protein
Descriptor: Sphingomyelin synthase-related protein 1
Authors:Hu, K, Zhang, Q, Chen, Y, Yao, D, Zhou, L, Cao, Y.
Deposit date:2023-09-06
Release date:2024-02-28
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Cryo-EM structure of human sphingomyelin synthase and its mechanistic implications for sphingomyelin synthesis.
Nat.Struct.Mol.Biol., 31, 2024
4NYL
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BU of 4nyl by Molmil
Crystal structure of adalimumab FAB fragment
Descriptor: Adalimumab Heavy Chain, Adalimumab Light Chain
Authors:Fan, L.J, Lv, L.L, Zhang, Q.J, Chen, C.L.
Deposit date:2013-12-10
Release date:2014-12-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of adalimumab FAB fragment
To be Published
7FJB
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BU of 7fjb by Molmil
KpAckA (PduW) with AMPPNP, sodium acetate complex structure
Descriptor: ACETATE ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Probable propionate kinase, ...
Authors:Wenyue, W, Zhang, Q, Bartlam, M.
Deposit date:2021-08-03
Release date:2022-08-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:KpAckA (PduW) with AMPPNP, sodium acetate complex structure
To Be Published
7DVQ
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BU of 7dvq by Molmil
Cryo-EM Structure of the Activated Human Minor Spliceosome (minor Bact Complex)
Descriptor: 116 kDa U5 small nuclear ribonucleoprotein component, 5'-O-[(S)-hydroxy{[(R)-hydroxy{[(S)-hydroxy(methoxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine, Armadillo repeat-containing protein 7, ...
Authors:Bai, R, Wan, R, Wang, L, Xu, K, Zhang, Q, Lei, J, Shi, Y.
Deposit date:2021-01-14
Release date:2021-03-31
Method:ELECTRON MICROSCOPY (2.89 Å)
Cite:Structure of the activated human minor spliceosome.
Science, 371, 2021
7VH8
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BU of 7vh8 by Molmil
Crystal structure of SARS-CoV-2 main protease in complex with protease inhibitor PF-07321332
Descriptor: (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide, 3C-like proteinase, DIMETHYL SULFOXIDE
Authors:Zhao, Y, Zhang, Q, Yang, H, Rao, Z.
Deposit date:2021-09-21
Release date:2021-11-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Crystal structure of SARS-CoV-2 main protease in complex with protease inhibitor PF-07321332.
Protein Cell, 13, 2022
8GPD
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BU of 8gpd by Molmil
Crystal structure of NDM-1 at pH5.5 (Succinate) in complex with hydrolyzed penicillin V
Descriptor: (2R,4S)-5,5-dimethyl-2-[(1R)-2-oxidanyl-2-oxidanylidene-1-(2-phenoxyethanoylamino)ethyl]-1,3-thiazolidine-4-carboxylic acid, Metallo beta lactamase NDM-1, POTASSIUM ION, ...
Authors:Shi, X, Dai, Y, Zhang, Q, Liu, W.
Deposit date:2022-08-26
Release date:2023-08-30
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Interplay between the beta-lactam side chain and an active-site mobile loop of NDM-1 in penicillin hydrolysis as a potential target for mechanism-based inhibitor design.
Int.J.Biol.Macromol., 262, 2024

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PDB entries from 2024-09-18

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