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PDB: 69 results

8XYN
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Structure of the engineered retro-aldolase RA95.5-8
Descriptor: 4-[dodecyl(dimethyl)-$l^{4}-azanyl]butanoic acid, retro-aldolase RA95.5-8
Authors:Kunthic, T, Yu, M.Z, Xiang, Z.
Deposit date:2024-01-20
Release date:2024-07-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:An Artificial Enzyme for Asymmetric Nitrocyclopropanation of alpha , beta-Unsaturated Aldehydes-Design and Evolution.
Angew.Chem.Int.Ed.Engl., 63, 2024
2FOI
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BU of 2foi by Molmil
Synthesis, Biological Activity, and X-Ray Crystal Structural Analysis of Diaryl Ether Inhibitors of Malarial Enoyl ACP Reductase.
Descriptor: 4-(2,4-DICHLOROPHENOXY)-2'-METHYLBIPHENYL-3-OL, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, enoyl-acyl carrier reductase
Authors:Freundlich, J.S, Shieh, H, Anderson, J.W, Kuo, M, Yu, M, Valderramos, J, Karagyozov, L, Tsai, H, Lucumi, E, Jacobs Jr, W.R, Schiehser, G.A, Jacobus, D.P, Fidock, D.A, Sacchettini, J.C.
Deposit date:2006-01-13
Release date:2007-01-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:X-ray Structural Analysis of Plasmodium falciparum Enoyl Acyl Carrier Protein Reductase as a Pathway toward the Optimization of Triclosan Antimalarial Efficacy.
J.Biol.Chem., 282, 2007
5AFR
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BU of 5afr by Molmil
N-terminal fragment of dynein heavy chain
Descriptor: DYNEIN HEAVY CHAIN, CYTOPLASMIC
Authors:Urnavicius, L, Zhang, K, Diamant, A.G, Motz, C, Schlager, M.A, Yu, M, Patel, N.A, Robinson, C.V, Carter, A.P.
Deposit date:2015-01-23
Release date:2015-02-18
Last modified:2018-04-25
Method:X-RAY DIFFRACTION (5 Å)
Cite:The Structure of the Dynactin Complex and its Interaction with Dynein.
Science, 347, 2015
2G5F
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BU of 2g5f by Molmil
The structure of MbtI from Mycobacterium Tuberculosis, the first enzyme in the synthesis of Mycobactin, reveals it to be a salicylate synthase
Descriptor: COG0147: Anthranilate/para-aminobenzoate synthases component I, GLYCEROL, IMIDAZOLE, ...
Authors:Harrison, A.J, Lott, J.S, Yu, M, Ramsay, R, Baker, E.N, TB Structural Genomics Consortium (TBSGC)
Deposit date:2006-02-22
Release date:2006-09-05
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Structure of MbtI from Mycobacterium tuberculosis, the First Enzyme in the Biosynthesis of the Siderophore Mycobactin, Reveals It To Be a Salicylate Synthase
J.Bacteriol., 188, 2006
2NQ8
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Malarial enoyl acyl ACP reductase bound with INH-NAD adduct
Descriptor: Enoyl-acyl carrier reductase, ISONICOTINIC-ACETYL-NICOTINAMIDE-ADENINE DINUCLEOTIDE
Authors:Freundlich, J.S, Yu, M, Lucumi, E, Kuo, M, Tsai, H.C, Valderramos, J.C, Karagyozov, L, Jacobs Jr, W.R, Schiehser, G.A, Fidock, D.A, Jacobus, D.P, Sacchettini, J.C.
Deposit date:2006-10-30
Release date:2007-07-17
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:X-ray structural analysis of Plasmodium falciparum enoyl acyl carrier protein reductase as a pathway toward the optimization of triclosan antimalarial efficacy
J.Biol.Chem., 282, 2007
6QAJ
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BU of 6qaj by Molmil
Structure of the tripartite motif of KAP1/TRIM28
Descriptor: Endolysin,Transcription intermediary factor 1-beta, ZINC ION
Authors:Stoll, G.A, Oda, S, Yu, M, Modis, Y.
Deposit date:2018-12-19
Release date:2019-07-24
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.901 Å)
Cite:Structure of KAP1 tripartite motif identifies molecular interfaces required for retroelement silencing.
Proc.Natl.Acad.Sci.USA, 116, 2019
2JEV
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Crystal structure of human spermine,spermidine acetyltransferase in complex with a bisubstrate analog (N1-acetylspermine-S-CoA).
Descriptor: (3R)-27-AMINO-3-HYDROXY-2,2-DIMETHYL-4,8,14-TRIOXO-12-THIA-5,9,15,19,24-PENTAAZAHEPTACOS-1-YL [(2S,3R,4S,5S)-5-(6-AMINO-9H-PURIN-9-YL)-4-HYDROXY-3-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE, DIAMINE ACETYLTRANSFERASE 1
Authors:Hegde, S.S, Chandler, J, Vetting, M.W, Yu, M, Blanchard, J.S.
Deposit date:2007-01-23
Release date:2007-06-05
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Mechanistic and Structural Analysis of Human Spermidine/Spermine N(1)-Acetyltransferase.
Biochemistry, 46, 2007
2H5X
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BU of 2h5x by Molmil
RuvA from Mycobacterium tuberculosis
Descriptor: GLYCEROL, Holliday junction ATP-dependent DNA helicase ruvA
Authors:Prabu, J.R, Thamotharan, S, Khanduja, J.S, Alipio, E.Z, Kim, C.Y, Waldo, G.S, Terwilliger, T.C, Segelke, B, Lekin, T, Toppani, D, Hung, L.W, Yu, M, Bursey, E, Muniyappa, K, Chandra, N.R, Vijayan, M.
Deposit date:2006-05-28
Release date:2006-08-15
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of Mycobacterium tuberculosis RuvA, a protein involved in recombination.
ACTA CRYSTALLOGR.,SECT.F, 62, 2006
2FSX
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Crystal structure of Rv0390 from M. tuberculosis
Descriptor: BROMIDE ION, COG0607: Rhodanese-related sulfurtransferase, SULFATE ION
Authors:Bursey, E.H, Radhakannan, T, Yu, M, Segelke, B.W, Lekin, T, Toppani, D, Chang, Y.-B, Kaviratne, T, Woodruff, T, Terwilliger, T.C, Hung, L.-W, TB Structural Genomics Consortium (TBSGC)
Deposit date:2006-01-23
Release date:2006-02-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of Rv0390 from Mycobacterium tuberculosis
To be Published
2GWR
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BU of 2gwr by Molmil
Crystal structure of the response regulator protein mtrA from Mycobacterium Tuberculosis
Descriptor: CALCIUM ION, DNA-binding response regulator mtrA, GLYCEROL
Authors:Friedland, N, Mack, T.R, Yu, M, Bursey, E.H, Hung, L.W, Stock, A.M, Waldo, G.S, Terwilliger, T.C.
Deposit date:2006-05-05
Release date:2006-05-23
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Domain orientation in the inactive response regulator Mycobacterium tuberculosis MtrA provides a barrier to activation.
Biochemistry, 46, 2007
3NO9
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BU of 3no9 by Molmil
Crystal Structure of apo fumarate hydratase from Mycobacterium tuberculosis
Descriptor: Fumarate hydratase class II
Authors:Li, H, Swanson, S, Yu, M, Hung, L.-W, Sacchettini, J.C, TB Structural Genomics Consortium (TBSGC)
Deposit date:2010-06-25
Release date:2010-07-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Crystal Structure of apo fumarate hydratase from Mycobacterium tuberculosis
To be Published
5YEU
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BU of 5yeu by Molmil
Structural and mechanistic analyses reveal a unique Cas4-like protein in the mimivirus virophage resistance element system
Descriptor: MAGNESIUM ION, Uncharacterized protein R354
Authors:Dou, C, Yu, M.J, Gu, Y.J, Cheng, W.
Deposit date:2017-09-19
Release date:2018-07-25
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (3.001 Å)
Cite:Structural and Mechanistic Analyses Reveal a Unique Cas4-like Protein in the Mimivirus Virophage Resistance Element System.
Iscience, 3, 2018
5YET
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BU of 5yet by Molmil
Structure of R354_WT
Descriptor: Uncharacterized protein R354
Authors:Dou, C, Yu, M.J, Gu, Y.J, Cheng, W.
Deposit date:2017-09-19
Release date:2018-06-20
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.806 Å)
Cite:Structural and Mechanistic Analyses Reveal a Unique Cas4-like Protein in the Mimivirus Virophage Resistance Element System.
Iscience, 3, 2018
2FVH
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BU of 2fvh by Molmil
Crystal Structure of Rv1848, a Urease Gamma Subunit UreA (Urea amidohydrolase), from Mycobacterium Tuberculosis
Descriptor: Urease gamma subunit
Authors:Bursey, E.H, Yu, M, TB Structural Genomics Consortium (TBSGC), Lekin, T, Rupp, B, Kim, C.Y, Rho, B.S, Terwilliger, T.C.
Deposit date:2006-01-30
Release date:2006-02-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of Rv1848, a Urease Gamma Subunit UreA (Urea amidohydrolase), from Mycobacterium Tuberculosis
To be Published
2G2D
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BU of 2g2d by Molmil
Crystal structure of a putative pduO-type ATP:cobalamin adenosyltransferase from Mycobacterium tuberculosis
Descriptor: ATP:cobalamin adenosyltransferase
Authors:Moon, J.H, Kaviratne, A, Yu, M, Bursey, E.H, Hung, L.-W, Lekin, T.P, Segelke, B.W, Terwilliger, T.C, Kim, C.-Y, TB Structural Genomics Consortium (TBSGC)
Deposit date:2006-02-15
Release date:2006-03-28
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a putative pduO-type ATP:cobalamin adenosyltransferase from Mycobacterium tuberculosis.
To be Published
6EWH
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BU of 6ewh by Molmil
Oreochromis niloticus CEP120 second C2 domain (C2B) G307S mutant
Descriptor: Centrosomal protein 120
Authors:van Breugel, M, al-Jassar, C, Yu, M.
Deposit date:2017-11-04
Release date:2018-05-02
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Disease-Associated Mutations in CEP120 Destabilize the Protein and Impair Ciliogenesis.
Cell Rep, 23, 2018
1QDV
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BU of 1qdv by Molmil
N-TERMINAL DOMAIN, VOLTAGE-GATED POTASSIUM CHANNEL KV1.2 RESIDUES 33-131
Descriptor: KV1.2 VOLTAGE-GATED POTASSIUM CHANNEL
Authors:Minor Jr, D.L, Lin, Y.-F, Mobley, B.C, Yu, M, Jan, Y.N, Jan, L.Y, Berger, J.M.
Deposit date:1999-07-10
Release date:2000-09-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The polar T1 interface is linked to conformational changes that open the voltage-gated potassium channel.
Cell(Cambridge,Mass.), 102, 2000
4P0M
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BU of 4p0m by Molmil
Crystal structure of an evolved putative penicillin-binding protein homolog, Rv2911, from Mycobacterium tuberculosis
Descriptor: D-alanyl-D-alanine carboxypeptidase
Authors:Krieger, I, Yu, M, Bursey, E, Hung, L.-W, Terwilliger, T.C, TB Structural Genomics Consortium (TBSGC)
Deposit date:2014-02-21
Release date:2014-03-12
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Subfamily-Specific Adaptations in the Structures of Two Penicillin-Binding Proteins from Mycobacterium tuberculosis.
Plos One, 9, 2014
2A6P
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BU of 2a6p by Molmil
Structure Solution to 2.2 Angstrom and Functional Characterisation of the Open Reading Frame Rv3214 from Mycobacterium tuberculosis
Descriptor: GLYCEROL, POSSIBLE PHOSPHOGLYCERATE MUTASE GPM2, SULFATE ION
Authors:Watkins, H.A, Yu, M, Baker, E.N, TB Structural Genomics Consortium (TBSGC)
Deposit date:2005-07-03
Release date:2006-05-16
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and Functional Analysis of Rv3214 from Mycobacterium tuberculosis, a Protein with Conflicting Functional Annotations, Leads to Its Characterization as a Phosphatase.
J.Bacteriol., 188, 2006
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