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PDB: 149 results

4MKW
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Comparison of the structural and dynamic effects of 5-methylcytosine and 5-chlorocytosine in a CpG dinucleotide sequence
Descriptor: 5methylC DNA dodecamer, MAGNESIUM ION
Authors:Yin, Y.W.
Deposit date:2013-09-05
Release date:2013-11-06
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.219 Å)
Cite:Comparison of the structural and dynamic effects of 5-methylcytosine and 5-chlorocytosine in a CpG dinucleotide sequence.
Biochemistry, 52, 2013
8E4L
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BU of 8e4l by Molmil
The open state mouse TRPM8 structure in complex with the cooling agonist C3, AITC, and PI(4,5)P2
Descriptor: 3-isothiocyanatoprop-1-ene, CALCIUM ION, Transient receptor potential cation channel subfamily M member 8, ...
Authors:Yin, Y, Zhang, F, Feng, S, Butay, K.J, Borgnia, M.J, Im, W, Lee, S.-Y.
Deposit date:2022-08-18
Release date:2022-10-26
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.32 Å)
Cite:Activation mechanism of the mouse cold-sensing TRPM8 channel by cooling agonist and PIP 2.
Science, 378, 2022
8E4O
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BU of 8e4o by Molmil
The closed C1-state mouse TRPM8 structure in complex with putative PI(4,5)P2
Descriptor: Transient receptor potential cation channel subfamily M member 8, [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate
Authors:Yin, Y, Zhang, F, Feng, S, Butay, K.J, Borgnia, M.J, Im, W, Lee, S.-Y.
Deposit date:2022-08-18
Release date:2022-10-26
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.43 Å)
Cite:Activation mechanism of the mouse cold-sensing TRPM8 channel by cooling agonist and PIP 2.
Science, 378, 2022
8E4N
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BU of 8e4n by Molmil
The closed C1-state mouse TRPM8 structure in complex with PI(4,5)P2
Descriptor: Transient receptor potential cation channel subfamily M member 8, [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate
Authors:Yin, Y, Zhang, F, Feng, S, Butay, K.J, Borgnia, M.J, Im, W, Lee, S.-Y.
Deposit date:2022-08-18
Release date:2022-10-26
Method:ELECTRON MICROSCOPY (3.07 Å)
Cite:Activation mechanism of the mouse cold-sensing TRPM8 channel by cooling agonist and PIP 2.
Science, 378, 2022
8E4Q
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BU of 8e4q by Molmil
The closed C0-state flycatcher TRPM8 structure in complex with PI(4,5)P2
Descriptor: Transient receptor potential cation channel subfamily M member 8, [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate
Authors:Yin, Y, Zhang, F, Feng, S, Butay, K.J, Borgnia, M.J, Im, W, Lee, S.-Y.
Deposit date:2022-08-18
Release date:2022-10-26
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.51 Å)
Cite:Activation mechanism of the mouse cold-sensing TRPM8 channel by cooling agonist and PIP 2.
Science, 378, 2022
8E4P
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BU of 8e4p by Molmil
Mouse TRPM8 structure determined in the ligand- and PI(4,5)P2-free condition, Class I , C0 state
Descriptor: CHOLESTEROL HEMISUCCINATE, Transient receptor potential cation channel subfamily M member 8
Authors:Yin, Y, Zhang, F, Feng, S, Butay, K.J, Borgnia, M.J, Im, W, Lee, S.-Y.
Deposit date:2022-08-18
Release date:2022-10-26
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.59 Å)
Cite:Activation mechanism of the mouse cold-sensing TRPM8 channel by cooling agonist and PIP 2.
Science, 378, 2022
8E4M
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BU of 8e4m by Molmil
The intermediate C2-state mouse TRPM8 structure in complex with the cooling agonist C3 and PI(4,5)P2
Descriptor: CALCIUM ION, Transient receptor potential cation channel subfamily M member 8, [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate, ...
Authors:Yin, Y, Zhang, F, Feng, S, Butay, K.J, Borgnia, M.J, Im, W, Lee, S.-Y.
Deposit date:2022-08-18
Release date:2022-10-26
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.44 Å)
Cite:Activation mechanism of the mouse cold-sensing TRPM8 channel by cooling agonist and PIP 2.
Science, 378, 2022
6W6G
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BU of 6w6g by Molmil
The Mycobacterium tuberculosis ClpB disaggregase hexamer structure in conformation I in the presence of DnaK chaperone and a model substrate
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chaperone protein ClpB, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
Authors:Yin, Y, Li, H.
Deposit date:2020-03-16
Release date:2021-03-17
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural basis for aggregate dissolution and refolding by the Mycobacterium tuberculosis ClpB-DnaK bi-chaperone system.
Cell Rep, 35, 2021
6W6H
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BU of 6w6h by Molmil
The Mycobacterium tuberculosis ClpB disaggregase hexamer structure in conformation II in the presence of DnaK chaperone and a model substrate
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chaperone protein ClpB, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
Authors:Yin, Y, Li, H.
Deposit date:2020-03-16
Release date:2021-05-26
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural basis for aggregate dissolution and refolding by the Mycobacterium tuberculosis ClpB-DnaK bi-chaperone system.
Cell Rep, 35, 2021
6W6I
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BU of 6w6i by Molmil
The Mycobacterium tuberculosis ClpB disaggregase hexamer structure in conformation T in the presence of DnaK chaperone and a model substrate
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chaperone protein ClpB, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
Authors:Yin, Y, Li, H.
Deposit date:2020-03-17
Release date:2021-05-26
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structural basis for aggregate dissolution and refolding by the Mycobacterium tuberculosis ClpB-DnaK bi-chaperone system.
Cell Rep, 35, 2021
6W6E
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BU of 6w6e by Molmil
The Mycobacterium tuberculosis ClpB disaggregase hexamer structure with a locally refined ClpB middle domain and a DnaK nucleotide binding domain
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chaperone protein ClpB, Chaperone protein DnaK, ...
Authors:Yin, Y, Li, H.
Deposit date:2020-03-16
Release date:2021-05-26
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural basis for aggregate dissolution and refolding by the Mycobacterium tuberculosis ClpB-DnaK bi-chaperone system.
Cell Rep, 35, 2021
6W6J
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BU of 6w6j by Molmil
The Mycobacterium tuberculosis ClpB disaggregase hexamer structure with a locally refined N-terminal domain in the presence of DnaK chaperone and a model substrate
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chaperone protein ClpB, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
Authors:Yin, Y, Li, H.
Deposit date:2020-03-17
Release date:2021-05-26
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural basis for aggregate dissolution and refolding by the Mycobacterium tuberculosis ClpB-DnaK bi-chaperone system.
Cell Rep, 35, 2021
4WV1
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BU of 4wv1 by Molmil
Crystal structure of the FGFR2 D2 domain in complex with Fab 2B.1.3
Descriptor: Fab heavy chain, Fab light chain, Fibroblast growth factor receptor 2
Authors:Yin, Y, Carter, P.J.
Deposit date:2014-11-04
Release date:2015-09-16
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.362 Å)
Cite:Redesigning a Monospecific Anti-FGFR3 Antibody to Add Selectivity for FGFR2 and Expand Antitumor Activity.
Mol.Cancer Ther., 14, 2015
7LJF
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BU of 7ljf by Molmil
Cryo-EM structure of the Mpa hexamer in the presence of ATP and the Pup-FabD substrate
Descriptor: AAA ATPase forming ring-shaped complexes, ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Yin, Y, Li, H.
Deposit date:2021-01-29
Release date:2021-05-05
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Cryo-EM structure of the Mpa hexamer in the presence of ATP and the Pup-FabD substrate
J.Biol.Chem., 2021
7X1G
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BU of 7x1g by Molmil
Cryo-EM structure of human BTR1 in the inward-facing state at pH 5.5
Descriptor: Isoform 1 of Solute carrier family 4 member 11
Authors:Yin, Y, Lu, Y, Zuo, P.
Deposit date:2022-02-24
Release date:2023-10-04
Last modified:2023-10-11
Method:ELECTRON MICROSCOPY (2.94 Å)
Cite:Structural insights into the conformational changes of BTR1/SLC4A11 in complex with PIP 2.
Nat Commun, 14, 2023
7X1H
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BU of 7x1h by Molmil
Cryo-EM structure of human BTR1 in the inward-facing state with R125H mutation
Descriptor: Isoform 1 of Solute carrier family 4 member 11
Authors:Yin, Y, Lu, Y, Zuo, P.
Deposit date:2022-02-24
Release date:2023-10-04
Last modified:2023-10-11
Method:ELECTRON MICROSCOPY (2.96 Å)
Cite:Structural insights into the conformational changes of BTR1/SLC4A11 in complex with PIP 2.
Nat Commun, 14, 2023
7X1I
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BU of 7x1i by Molmil
Cryo-EM structure of human BTR1 in the outward-facing state.
Descriptor: Isoform 1 of Solute carrier family 4 member 11, [(2R)-1-octadecanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phospho ryl]oxy-propan-2-yl] (8Z)-icosa-5,8,11,14-tetraenoate
Authors:Yin, Y, Lu, Y, Zuo, P.
Deposit date:2022-02-24
Release date:2023-11-01
Method:ELECTRON MICROSCOPY (2.94 Å)
Cite:Structural insights into the conformational changes of BTR1/SLC4A11 in complex with PIP 2.
Nat Commun, 14, 2023
7X1J
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BU of 7x1j by Molmil
Cryo-EM structure of human BTR1 in the outward-facing state in the presence of NH4Cl.
Descriptor: Isoform 1 of Solute carrier family 4 member 11, [(2R)-1-octadecanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phospho ryl]oxy-propan-2-yl] (8Z)-icosa-5,8,11,14-tetraenoate
Authors:Yin, Y, Lu, Y, Zuo, P.
Deposit date:2022-02-24
Release date:2023-11-01
Method:ELECTRON MICROSCOPY (2.84 Å)
Cite:Structural insights into the conformational changes of BTR1/SLC4A11 in complex with PIP 2.
Nat Commun, 14, 2023
7L6N
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BU of 7l6n by Molmil
The Mycobacterium tuberculosis ClpB disaggregase hexamer structure with three locally refined ClpB middle domains and three DnaK nucleotide binding domains
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chaperone protein ClpB, Chaperone protein DnaK, ...
Authors:Yin, Y.Y, Feng, X, Li, H.
Deposit date:2020-12-23
Release date:2021-05-26
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (7 Å)
Cite:Structural basis for aggregate dissolution and refolding by the Mycobacterium tuberculosis ClpB-DnaK bi-chaperone system.
Cell Rep, 35, 2021
9B6G
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BU of 9b6g by Molmil
Cryo-EM structure of the mouse TRPM8 channel in complex with the antagonist AMTB
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL HEMISUCCINATE, N-(3-aminopropyl)-2-[(3-methylphenyl)methoxy]-N-[(thiophen-2-yl)methyl]benzamide, ...
Authors:Yin, Y, Park, C.-G, Zhang, F, Fedor, J, Feng, S, Suo, Y, Im, W, Lee, S.-Y.
Deposit date:2024-03-25
Release date:2024-08-21
Method:ELECTRON MICROSCOPY (2.81 Å)
Cite:Mechanisms of sensory adaptation and inhibition of the cold and menthol receptor TRPM8.
Sci Adv, 10, 2024
9B6I
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BU of 9b6i by Molmil
Cryo-EM structure of the avian great tit TRPM8 channel in complex with the antagonist TC-I 2014
Descriptor: 3-{7-(trifluoromethyl)-5-[2-(trifluoromethyl)phenyl]-1H-benzimidazol-2-yl}-1-oxa-2-azaspiro[4.5]dec-2-ene, CALCIUM ION, CHOLESTEROL HEMISUCCINATE, ...
Authors:Yin, Y, Park, C.-G, Zhang, F, Fedor, J, Feng, S, Suo, Y, Im, W, Lee, S.-Y.
Deposit date:2024-03-25
Release date:2024-08-21
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.26 Å)
Cite:Mechanisms of sensory adaptation and inhibition of the cold and menthol receptor TRPM8.
Sci Adv, 10, 2024
9B6F
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BU of 9b6f by Molmil
Cryo-EM structure of the mouse TRPM8 channel in complex with the antagonist AMG2850
Descriptor: (8R)-8-[4-(trifluoromethyl)phenyl]-N-[(2S)-1,1,1-trifluoropropan-2-yl]-5,8-dihydro-1,7-naphthyridine-7(6H)-carboxamide, CHOLESTEROL HEMISUCCINATE, Transient receptor potential cation channel subfamily M member 8
Authors:Yin, Y, Park, C.-G, Zhang, F, Fedor, J, Feng, S, Suo, Y, Im, W, Lee, S.-Y.
Deposit date:2024-03-25
Release date:2024-08-21
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.42 Å)
Cite:Mechanisms of sensory adaptation and inhibition of the cold and menthol receptor TRPM8.
Sci Adv, 10, 2024
9B6E
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BU of 9b6e by Molmil
Cryo-EM structure of the mouse TRPM8 channel in complex with the antagonist TC-I 2014
Descriptor: 3-{7-(trifluoromethyl)-5-[2-(trifluoromethyl)phenyl]-1H-benzimidazol-2-yl}-1-oxa-2-azaspiro[4.5]dec-2-ene, CHOLESTEROL HEMISUCCINATE, Transient receptor potential cation channel subfamily M member 8
Authors:Yin, Y, Park, C.-G, Zhang, F, Fedor, J, Feng, S, Suo, Y, Im, W, Lee, S.-Y.
Deposit date:2024-03-25
Release date:2024-08-21
Method:ELECTRON MICROSCOPY (2.91 Å)
Cite:Mechanisms of sensory adaptation and inhibition of the cold and menthol receptor TRPM8.
Sci Adv, 10, 2024
9B6D
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BU of 9b6d by Molmil
Cryo-EM structure of the mouse TRPM8 channel in the ligand-free desensitized state
Descriptor: CHOLESTEROL HEMISUCCINATE, Transient receptor potential cation channel subfamily M member 8
Authors:Yin, Y, Park, C.-G, Zhang, F, Fedor, J, Feng, S, Suo, Y, Im, W, Lee, S.-Y.
Deposit date:2024-03-25
Release date:2024-08-21
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Mechanisms of sensory adaptation and inhibition of the cold and menthol receptor TRPM8.
Sci Adv, 10, 2024
9B6H
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BU of 9b6h by Molmil
Cryo-EM structure of the mouse TRPM8 channel in complex with the antagonist TC-I 2014 and the cooling agonist C3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 3-{7-(trifluoromethyl)-5-[2-(trifluoromethyl)phenyl]-1H-benzimidazol-2-yl}-1-oxa-2-azaspiro[4.5]dec-2-ene, CHOLESTEROL HEMISUCCINATE, ...
Authors:Yin, Y, Park, C.-G, Zhang, F, Fedor, J, Feng, S, Suo, Y, Im, W, Lee, S.-Y.
Deposit date:2024-03-25
Release date:2024-08-21
Method:ELECTRON MICROSCOPY (2.76 Å)
Cite:Mechanisms of sensory adaptation and inhibition of the cold and menthol receptor TRPM8.
Sci Adv, 10, 2024

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