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PDB: 152 results

2KAP
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BU of 2kap by Molmil
Solution structure of DLC1-SAM
Descriptor: Rho GTPase-activating protein 7
Authors:Yang, S, Yang, D.
Deposit date:2008-11-12
Release date:2009-10-20
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Characterization of DLC1-SAM equilibrium unfolding at the amino acid residue level
Biochemistry, 48, 2009
2GYT
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BU of 2gyt by Molmil
Solution structure of the SAM (sterile alpha motif) domain of DLC1 (deleted in liver cancer 1)
Descriptor: Deleted in liver cancer 1 protein, isoform 2
Authors:Yang, S.
Deposit date:2006-05-10
Release date:2007-04-24
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:The SAM domain of the RhoGAP DLC1 binds EF1A1 to regulate cell migration
J.Cell.Sci., 122, 2009
6BD4
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BU of 6bd4 by Molmil
Crystal structure of human apo-Frizzled4 receptor
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Frizzled-4/Rubredoxin chimeric protein, OLEIC ACID, ...
Authors:Yang, S, Wu, Y, Pu, M, Chen, Y, Dong, S, Guo, Y, Han, G.Y, Stevens, R.C, Zhao, S, Xu, F.
Deposit date:2017-10-21
Release date:2018-08-22
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the Frizzled 4 receptor in a ligand-free state.
Nature, 560, 2018
3L43
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BU of 3l43 by Molmil
Crystal structure of the dynamin 3 GTPase domain bound with GDP
Descriptor: Dynamin-3, GUANOSINE-5'-DIPHOSPHATE, UNKNOWN ATOM OR ION
Authors:Yang, S, Tempel, W, Tong, Y, Nedyalkova, L, Guan, X, Crombet, L, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Weigelt, J, Bochkarev, A, Park, H, Structural Genomics Consortium (SGC)
Deposit date:2009-12-18
Release date:2010-01-19
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Crystal structure of the dynamin 3 GTPase domain bound with GDP
to be published
5JJY
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BU of 5jjy by Molmil
Crystal structure of SETD2 bound to histone H3.3 K36M peptide
Descriptor: Histone H3.3, Histone-lysine N-methyltransferase SETD2, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Yang, S, Zheng, X, Li, H.
Deposit date:2016-04-25
Release date:2016-11-02
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.053 Å)
Cite:Molecular basis for oncohistone H3 recognition by SETD2 methyltransferase
Genes Dev., 30, 2016
6VNW
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BU of 6vnw by Molmil
Cryo-EM structure of apo-BBSome
Descriptor: BBS1 domain-containing protein, Bardet-Biedl syndrome 18 protein, Bardet-Biedl syndrome 2 protein homolog, ...
Authors:Yang, S, Walz, T, Nachury, M, Chou, H.
Deposit date:2020-01-29
Release date:2020-07-01
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.44 Å)
Cite:Near-atomic structures of the BBSome reveal the basis for BBSome activation and binding to GPCR cargoes.
Elife, 9, 2020
6VOA
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BU of 6voa by Molmil
Cryo-EM structure of the BBSome-ARL6 complex
Descriptor: ADP-ribosylation factor-like protein 6, BBS1 domain-containing protein, Bardet-Biedl syndrome 18 protein, ...
Authors:Yang, S, Walz, T, Nachury, M.V.
Deposit date:2020-01-30
Release date:2020-06-24
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Near-atomic structures of the BBSome reveal the basis for BBSome activation and binding to GPCR cargoes.
Elife, 9, 2020
7SC5
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BU of 7sc5 by Molmil
Cytoplasmic tail deleted HIV Env trimer in nanodisc
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp120, ...
Authors:Yang, S, Walz, T.
Deposit date:2021-09-27
Release date:2022-11-09
Last modified:2023-02-22
Method:ELECTRON MICROSCOPY (3.88 Å)
Cite:Dynamic HIV-1 spike motion creates vulnerability for its membrane-bound tripod to antibody attack.
Nat Commun, 13, 2022
7SD3
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BU of 7sd3 by Molmil
Cytoplasmic tail deleted HIV-1 Env bound with three 4E10 Fabs
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4E10 Fab heavy chain, ...
Authors:Yang, S, Walz, T.
Deposit date:2021-09-29
Release date:2022-11-09
Last modified:2023-02-22
Method:ELECTRON MICROSCOPY (3.67 Å)
Cite:Dynamic HIV-1 spike motion creates vulnerability for its membrane-bound tripod to antibody attack.
Nat Commun, 13, 2022
2KET
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BU of 2ket by Molmil
solution structure of BMAP-27
Descriptor: Cathelicidin-6
Authors:Yang, S, Jung, H, Kim, J.
Deposit date:2009-02-03
Release date:2009-08-04
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:solution structure of BMAP-27
To be Published
3UI7
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BU of 3ui7 by Molmil
Discovery of orally active pyrazoloquinoline as a potent PDE10 inhibitor for the management of schizophrenia
Descriptor: 6-methoxy-3,8-dimethyl-4-(morpholin-4-ylmethyl)-1H-pyrazolo[3,4-b]quinoline, MAGNESIUM ION, ZINC ION, ...
Authors:Yang, S, Smotryski, J, Mcelroy, W, Ho, G, Tulshian, D, Greenlee, W.J, Hodgson, R, Xiao, L, Hruza, A.
Deposit date:2011-11-04
Release date:2011-12-21
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Discovery of orally active pyrazoloquinolines as potent PDE10 inhibitors for the management of schizophrenia.
Bioorg.Med.Chem.Lett., 22, 2012
7EF6
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BU of 7ef6 by Molmil
Crystal Structure of Xanthosine monophosphate phosphatase in the unliganded state
Descriptor: MAGNESIUM ION, Xanthosine monophosphate phosphatase
Authors:Yang, S, Rhee, S.
Deposit date:2021-03-21
Release date:2021-11-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Initiation of cytosolic plant purine nucleotide catabolism involves a monospecific xanthosine monophosphate phosphatase.
Nat Commun, 12, 2021
7EF7
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BU of 7ef7 by Molmil
Crystal Structure of Xanthosine monophosphate phosphatase complex with XMP
Descriptor: At2g32150/F22D22.10, MAGNESIUM ION, XANTHOSINE-5'-MONOPHOSPHATE
Authors:Yang, S, Rhee, S.
Deposit date:2021-03-21
Release date:2021-11-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Initiation of cytosolic plant purine nucleotide catabolism involves a monospecific xanthosine monophosphate phosphatase.
Nat Commun, 12, 2021
6J9J
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BU of 6j9j by Molmil
crystal structure of SESTD2 in complex with H3.3S31phK36M peptide
Descriptor: H3.3S31phK36M(29-42), Histone-lysine N-methyltransferase SETD2, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Yang, S, Li, H.T.
Deposit date:2019-01-23
Release date:2020-02-26
Last modified:2020-08-12
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Histone H3.3 phosphorylation amplifies stimulation-induced transcription.
Nature, 583, 2020
5XBZ
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BU of 5xbz by Molmil
Crystal structure of GH family 81 beta-1,3-glucanase from Rhizomucr miehei complexed with laminaripentaose
Descriptor: Endo-beta-1,3-glucanase, beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose, beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose, ...
Authors:Yang, S, Qin, Z, Zhou, P, Yan, Q, Jiang, Z.
Deposit date:2017-03-21
Release date:2018-03-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Catalytic mechanism of glycoside hydrolase family 81 beta-1,3-glucanase
To Be Published
6KWX
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BU of 6kwx by Molmil
cryo-EM structure of human PA200
Descriptor: INOSITOL HEXAKISPHOSPHATE, Proteasome activator complex subunit 4, [(1~{S},2~{R},3~{R},4~{S},5~{S},6~{R})-2-[oxidanyl(phosphonooxy)phosphoryl]oxy-3,4,5,6-tetraphosphonooxy-cyclohexyl] phosphono hydrogen phosphate
Authors:Ouyang, S, Hongxin, G.
Deposit date:2019-09-09
Release date:2020-04-01
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.75 Å)
Cite:Cryo-EM structures of the human PA200 and PA200-20S complex reveal regulation of proteasome gate opening and two PA200 apertures.
Plos Biol., 18, 2020
7DMS
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BU of 7dms by Molmil
A Fe(II)-binding effector of Yersinia pseudotuberculosis
Descriptor: Fe(II)-binding effector
Authors:Ouyang, S, Hongxin, G.
Deposit date:2020-12-07
Release date:2021-12-08
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:A Fe(II)-binding effector of Yersinia pseudotuberculosis
To Be Published
6M39
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BU of 6m39 by Molmil
Cryo-EM structure of SADS-CoV spike
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Ouyang, S, Hongxin, G.
Deposit date:2020-03-03
Release date:2020-08-26
Last modified:2020-11-11
Method:ELECTRON MICROSCOPY (3.55 Å)
Cite:Cryo-electron Microscopy Structure of the Swine Acute Diarrhea Syndrome Coronavirus Spike Glycoprotein Provides Insights into Evolution of Unique Coronavirus Spike Proteins.
J.Virol., 94, 2020
3VCF
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BU of 3vcf by Molmil
SSV1 integrase C-terminal catalytic domain (174-335aa)
Descriptor: Probable integrase
Authors:Ouyang, S, Liang, W, Huang, L, Liu, Z.-J.
Deposit date:2012-01-04
Release date:2012-05-30
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural and functional characterization of the C-terminal catalytic domain of SSV1 integrase.
Acta Crystallogr.,Sect.D, 68, 2012
4WYH
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BU of 4wyh by Molmil
Crystal structure of PriX from the hyperthermophilic archaeon Sulfolobus solfataricus
Descriptor: IODIDE ION, Uncharacterized protein
Authors:Ouyang, S.
Deposit date:2014-11-17
Release date:2015-06-24
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:A primase subunit essential for efficient primer synthesis by an archaeal eukaryotic-type primase.
Nat Commun, 6, 2015
5FA8
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BU of 5fa8 by Molmil
SAM complex with aKMT from the hyperthermophilic archaeon Sulfolobus islandicu
Descriptor: MAGNESIUM ION, Ribosomal protein L11 methyltransferase, putative, ...
Authors:Ouyang, S.
Deposit date:2015-12-11
Release date:2016-06-29
Last modified:2016-09-14
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:aKMT Catalyzes Extensive Protein Lysine Methylation in the Hyperthermophilic Archaeon Sulfolobus islandicus but is Dispensable for the Growth of the Organism
Mol.Cell Proteomics, 15, 2016
5FAD
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BU of 5fad by Molmil
SAH complex with aKMT from the hyperthermophilic archaeon Sulfolobus islandicus
Descriptor: MAGNESIUM ION, Ribosomal protein L11 methyltransferase, putative, ...
Authors:Ouyang, S.
Deposit date:2015-12-11
Release date:2016-06-29
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:aKMT Catalyzes Extensive Protein Lysine Methylation in the Hyperthermophilic Archaeon Sulfolobus islandicus but is Dispensable for the Growth of the Organism
Mol.Cell Proteomics, 15, 2016
3UX9
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BU of 3ux9 by Molmil
Structural insights into a human anti-IFN antibody exerting therapeutic potential for systemic lupus erythematosus
Descriptor: Interferon alpha-1/13, ScFv antibody
Authors:Ouyang, S, Zhao, L.X, Liang, W, Shaw, N, Liu, Z.-J, Liang, M.-F.
Deposit date:2011-12-04
Release date:2012-02-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural insights into a human anti-IFN antibody exerting therapeutic potential for systemic lupus erythematosus
J.Mol.Med., 2012
8IPJ
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BU of 8ipj by Molmil
Crystal structure of the Legionella effector protein MavL with ADPR-Ub
Descriptor: MavL, Ubiquitin, [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE
Authors:Ouyang, S, Guan, H.
Deposit date:2023-03-14
Release date:2024-03-20
Method:X-RAY DIFFRACTION (2.003 Å)
Cite:Crystal structure of the Legionella effector protein MavL with ADPR-Ub
To Be Published
8IPW
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BU of 8ipw by Molmil
The sturecture of Legionella effector protein MavL with ADPR
Descriptor: MavL, [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE
Authors:Ouyang, S, Hongxin, G.
Deposit date:2023-03-15
Release date:2024-03-20
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:The sturecture of Legionella effector protein MavL with ADPR
To Be Published

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PDB entries from 2024-07-17

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