Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 182 results

5YNP
DownloadVisualize
BU of 5ynp by Molmil
Crystal structure of MERS-CoV nsp16/nsp10 complex bound to sinefungin and m7GpppA
Descriptor: P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE, SINEFUNGIN, ZINC ION, ...
Authors:Wei, S.M, Yang, L, Ke, Z.H, Guo, D.Y, Fan, C.P.
Deposit date:2017-10-25
Release date:2018-12-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Structural insights into the molecular mechanism of MERS Coronavirus RNA ribose 2'-O-methylation by nsp16/nsp10 protein complex
To Be Published
5YNB
DownloadVisualize
BU of 5ynb by Molmil
Crystal structure of MERS-CoV nsp16/nsp10 complex bound to Sinefungin
Descriptor: SINEFUNGIN, ZINC ION, nsp10 protein, ...
Authors:Wei, S.M, Yang, L, Ke, Z.H, Chen, Y, Guo, D.Y, Fan, C.P.
Deposit date:2017-10-24
Release date:2018-12-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structural insights into the molecular mechanism of MERS Coronavirus RNA ribose 2'-O-methylation by nsp16/nsp10 protein complex
To Be Published
5YNM
DownloadVisualize
BU of 5ynm by Molmil
Crystal structure of MERS-CoV nsp16/nsp10 complex bound to SAM and m7GpppA
Descriptor: P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE, S-ADENOSYLMETHIONINE, ZINC ION, ...
Authors:Wei, S.M, Yang, L, Ke, Z.H, Guo, D.Y, Fan, C.P.
Deposit date:2017-10-24
Release date:2018-12-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Structural insights into the molecular mechanism of MERS Coronavirus RNA ribose 2'-O-methylation by nsp16/nsp10 protein complex
To Be Published
4JZR
DownloadVisualize
BU of 4jzr by Molmil
Structure of Prolyl Hydroxylase Domain-containing Protein (PHD) with Inhibitors
Descriptor: 1,2-ETHANEDIOL, 2-(biphenyl-4-yl)-8-[(1-methyl-1H-imidazol-2-yl)methyl]-2,8-diazaspiro[4.5]decan-1-one, Egl nine homolog 1, ...
Authors:Ma, Y, Yang, L.
Deposit date:2013-04-03
Release date:2013-10-30
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Novel complex crystal structure of prolyl hydroxylase domain-containing protein 2 (PHD2): 2,8-Diazaspiro[4.5]decan-1-ones as potent, orally bioavailable PHD2 inhibitors
Bioorg.Med.Chem., 21, 2013
5YNO
DownloadVisualize
BU of 5yno by Molmil
Crystal structure of MERS-CoV nsp16/nsp10 complex bound to SAH and m7GpppA
Descriptor: P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE, S-ADENOSYL-L-HOMOCYSTEINE, ZINC ION, ...
Authors:Wei, S.M, Yang, L, Ke, Z.H, Guo, D.Y, Fan, C.P.
Deposit date:2017-10-24
Release date:2018-12-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Structural insights into the molecular mechanism of MERS Coronavirus RNA ribose 2'-O-methylation by nsp16/nsp10 protein complex
To Be Published
6J3L
DownloadVisualize
BU of 6j3l by Molmil
Solution structure of the N-terminal extended protuberant domain of eukaryotic ribosomal stalk protein P0
Descriptor: 60S acidic ribosomal protein P0
Authors:Choi, K.H.A, Lee, K.M, Yang, L, Wing-Heng Yu, C, Banfield, D.K, Ito, K, Uchiumi, T, Wong, K.B.
Deposit date:2019-01-04
Release date:2019-09-04
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural and Mutagenesis Studies Evince the Role of the Extended Protuberant Domain of Ribosomal Protein uL10 in Protein Translation.
Biochemistry, 58, 2019
3TG9
DownloadVisualize
BU of 3tg9 by Molmil
The crystal structure of penicillin binding protein from Bacillus halodurans
Descriptor: Penicillin-binding protein
Authors:Zhang, Z, Satyanarayana, L, Chamala, S, Evans, B, Foti, R, Gizzi, A, Hillerich, B, Kar, A, LaFleur, J, Seidel, R, Villigas, G, Zencheck, W, Almo, S.C, Swaminathan, S, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2011-08-17
Release date:2011-08-31
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The crystal structure of penicillin binding protein from Bacillus halodurans
To be Published
1PJF
DownloadVisualize
BU of 1pjf by Molmil
Solid State NMR structure of the Pf1 Major Coat Protein in Magnetically Aligned Bacteriophage
Descriptor: COAT PROTEIN B
Authors:Thiriot, D.S, Nevzorov, A.A, Zagyanskiy, L, Wu, C.H, Opella, S.J.
Deposit date:2003-06-02
Release date:2004-08-10
Last modified:2024-05-01
Method:SOLID-STATE NMR
Cite:Structure of the coat protein in Pf1 bacteriophage determined by solid-state NMR spectroscopy.
J.Mol.Biol., 341, 2004
5HA9
DownloadVisualize
BU of 5ha9 by Molmil
Crystal structure-based design and disovery of a novel PARP1 antiagonist (BL-PA10) that induces apoptosis and inhibits metastasis in triple negative breast cancer
Descriptor: Amitriptyline, GLYCEROL, Poly [ADP-ribose] polymerase 1, ...
Authors:Fu, L, Peng, H, Zhang, L, Ouyang, L.
Deposit date:2015-12-30
Release date:2016-03-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (4.01 Å)
Cite:Crystal structure-based discovery of a novel synthesized PARP1 inhibitor (OL-1) with apoptosis-inducing mechanisms in triple-negative breast cancer.
Sci Rep, 6, 2016
5YAV
DownloadVisualize
BU of 5yav by Molmil
Fragment-based Drug Discovery of inhibitors to block PDEdelta-RAS protein-protein interaction
Descriptor: 1-phenyl-5-propan-2-ylsulfanyl-1,2,3,4-tetrazole, Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta
Authors:Bing, X, Yanlian, L, Danyan, C.
Deposit date:2017-09-01
Release date:2018-09-05
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.989 Å)
Cite:Fragment-based Drug Discovery of inhibitors to block PDEdelta-RAS protein-protein interaction
To Be Published
5YOU
DownloadVisualize
BU of 5you by Molmil
Crystal structure of BRD4-BD1 bound with hjp64
Descriptor: (3~{R})-4-cyclopropyl-~{N},1,3-trimethyl-~{N}-(4-methylphenyl)-2-oxidanylidene-3~{H}-quinoxaline-6-carboxamide, Bromodomain-containing protein 4
Authors:Bing, X, Jianping, H, Yanlian, L, Danyan, C.
Deposit date:2017-10-31
Release date:2018-11-07
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.503 Å)
Cite:Crystal structure of BRD4-BD1 bound with hjp64
To Be Published
5YAW
DownloadVisualize
BU of 5yaw by Molmil
Fragment-based Drug Discovery of inhibitors to block PDEdelta-RAS protein-protein interaction
Descriptor: 3-[(4-methoxyphenyl)methylsulfanyl]-5-(2-methylpropyl)-4-(phenylmethyl)-1,2,4-triazole, Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta
Authors:Bing, X, Yanlian, L, Danyan, C.
Deposit date:2017-09-01
Release date:2018-09-05
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.027 Å)
Cite:Fragment-based Drug Discovery of inhibitors to block PDEdelta-RAS protein-protein interaction
To Be Published
2XKX
DownloadVisualize
BU of 2xkx by Molmil
Single particle analysis of PSD-95 in negative stain
Descriptor: DISKS LARGE HOMOLOG 4
Authors:Fomina, S, Howard, T.D, Sleator, O.K, Golovanova, M, O'Ryan, L, Leyland, M.L, Grossmann, J.G, Collins, R.F, Prince, S.M.
Deposit date:2010-07-15
Release date:2011-07-20
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (22.9 Å), SOLUTION SCATTERING
Cite:Self-Directed Assembly and Clustering of the Cytoplasmic Domains of Inwardly Rectifying Kir2.1 Potassium Channels on Association with Psd-95
Biochim.Biophys.Acta, 1808, 2011
7DYQ
DownloadVisualize
BU of 7dyq by Molmil
Crystal structure of histone lysine demethylase 4D (KDM4D) in complex with the inhibitor 5-hydroxy-2-methylpyrazolo[1,5-a]pyrido[3,2-e]pyrimidine-3-carbonitrile
Descriptor: 5-hydroxy-2-methylpyrazolo[1,5-a]pyrido[3,2-e]pyrimidine-3-carbonitrile, FE (III) ION, Lysine-specific demethylase 4D
Authors:Wang, T, Yang, L.
Deposit date:2021-01-22
Release date:2022-01-26
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.998 Å)
Cite:Crystal structure of histone lysine demethylase 4D (KDM4D) in complex with the inhibitor 5-hydroxy-2-methylpyrazolo[1,5-a]pyrido[3,2-e]pyrimidine-3-carbonitrile
To Be Published
7DYG
DownloadVisualize
BU of 7dyg by Molmil
Histone lysine demethylase 4D (KDM4D) in complex with the inhibitor 2-(1H-pyrazol-3-yl)isonicotinic acid
Descriptor: 2-(1H-pyrazol-3-yl)pyridine-4-carboxylic acid, FE (III) ION, Lysine-specific demethylase 4D
Authors:Wang, T, Yang, L.
Deposit date:2021-01-21
Release date:2022-01-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of histone lysine demethylase 4D (KDM4D) in complex with the inhibitor 2-(1H-pyrazol-3-yl)isonicotinic acid
To Be Published
6KF1
DownloadVisualize
BU of 6kf1 by Molmil
Microbial Hormone-sensitive lipase- E53 mutant S162A
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, HEXANOIC ACID, ...
Authors:Xiaochen, Y, Zhengyang, L, Xuewei, X, Jixi, L.
Deposit date:2019-07-05
Release date:2020-07-08
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.996 Å)
Cite:Functional and Structural Insights into Environmental Adaptation of a Novel Hormone-sensitive Lipase, E53, Obtained from Erythrobacter longus
To Be Published
7E4A
DownloadVisualize
BU of 7e4a by Molmil
Crystal structure of MIF bound to compound 13
Descriptor: CHLORIDE ION, Flavoxate, Macrophage migration inhibitory factor, ...
Authors:Fa, C.P, Guo, D.Y, Yang, L.
Deposit date:2021-02-11
Release date:2023-02-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.475 Å)
Cite:Identification and Structure-Activity Relationships of Dietary Flavonoids as Human Macrophage Migration Inhibitory Factor (MIF) Inhibitors.
J.Agric.Food Chem., 69, 2021
7E49
DownloadVisualize
BU of 7e49 by Molmil
Crystal structure of MIF bound to compound10
Descriptor: 3,5,7-TRIHYDROXY-2-(3,4,5-TRIHYDROXYPHENYL)-4H-CHROMEN-4-ONE, CHLORIDE ION, Macrophage migration inhibitory factor
Authors:Fan, C.P, Guo, D.Y, Yang, L.
Deposit date:2021-02-11
Release date:2023-02-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.574 Å)
Cite:Identification and Structure-Activity Relationships of Dietary Flavonoids as Human Macrophage Migration Inhibitory Factor (MIF) Inhibitors.
J.Agric.Food Chem., 69, 2021
7E47
DownloadVisualize
BU of 7e47 by Molmil
Crystal structure of compound 6 bound to MIF
Descriptor: (2S,3R,4R,5R,6R)-2-[(2S,3R,4S,5R,6S)-6-(hydroxymethyl)-2-[[(2R,4R)-2-(4-hydroxyphenyl)-4,5-bis(oxidanyl)-3,4-dihydro-2H-chromen-7-yl]oxy]-4,5-bis(oxidanyl)oxan-3-yl]oxy-6-methyl-oxane-3,4,5-triol, CHLORIDE ION, Macrophage migration inhibitory factor
Authors:Fan, C.P, Yang, L, Guo, D.Y.
Deposit date:2021-02-10
Release date:2023-02-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Identification and Structure-Activity Relationships of Dietary Flavonoids as Human Macrophage Migration Inhibitory Factor (MIF) Inhibitors.
J.Agric.Food Chem., 69, 2021
7E4B
DownloadVisualize
BU of 7e4b by Molmil
Crystal structure of MIF bound to compound 5
Descriptor: 2-[2,4-bis(oxidanyl)phenyl]-3,5,7-tris(oxidanyl)chromen-4-one, CHLORIDE ION, Macrophage migration inhibitory factor
Authors:Fan, C.P, Guo, D.Y, Yang, L.
Deposit date:2021-02-11
Release date:2023-02-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.772 Å)
Cite:Identification and Structure-Activity Relationships of Dietary Flavonoids as Human Macrophage Migration Inhibitory Factor (MIF) Inhibitors.
J.Agric.Food Chem., 69, 2021
7E4C
DownloadVisualize
BU of 7e4c by Molmil
Crystal structure of MIF bound to compound11
Descriptor: 4-[(3R)-8,8-dimethyl-3,4-dihydro-2H,8H-pyrano[2,3-f]chromen-3-yl]benzene-1,3-diol, CHLORIDE ION, Macrophage migration inhibitory factor, ...
Authors:Fan, C.P, Guo, D.Y, Yang, L.
Deposit date:2021-02-11
Release date:2023-02-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.644 Å)
Cite:Identification and Structure-Activity Relationships of Dietary Flavonoids as Human Macrophage Migration Inhibitory Factor (MIF) Inhibitors.
J.Agric.Food Chem., 69, 2021
7E45
DownloadVisualize
BU of 7e45 by Molmil
Crystal structure of compound 7 bound to MIF
Descriptor: (2R)-7-[(2R,3R,4R,5S,6S)-6-(hydroxymethyl)-3-[(2R,3R,4R,5R,6S)-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4,5-bis(oxidanyl)oxan-2-yl]oxy-2-(4-methoxy-3-oxidanyl-phenyl)-5-oxidanyl-2,3-dihydrochromen-4-one, CHLORIDE ION, Macrophage migration inhibitory factor
Authors:Fan, C.P, Yang, L.
Deposit date:2021-02-10
Release date:2023-02-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.433 Å)
Cite:Identification and Structure-Activity Relationships of Dietary Flavonoids as Human Macrophage Migration Inhibitory Factor (MIF) Inhibitors.
J.Agric.Food Chem., 69, 2021
2XKY
DownloadVisualize
BU of 2xky by Molmil
Single particle analysis of Kir2.1NC_4 in negative stain
Descriptor: INWARD RECTIFIER POTASSIUM CHANNEL 2
Authors:Fomina, S, Howard, T.D, Sleator, O.K, Golovanova, M, O'Ryan, L, Leyland, M.L, Grossmann, J.G, Collins, R.F, Prince, S.M.
Deposit date:2010-07-15
Release date:2011-07-20
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (17.200001 Å), SOLUTION SCATTERING
Cite:Self-Directed Assembly and Clustering of the Cytoplasmic Domains of Inwardly Rectifying Kir2.1 Potassium Channels on Association with Psd-95
Biochim.Biophys.Acta, 1808, 2011
1XI2
DownloadVisualize
BU of 1xi2 by Molmil
Quinone Reductase 2 in Complex with Cancer Prodrug CB1954
Descriptor: 5-(AZIRIDIN-1-YL)-2,4-DINITROBENZAMIDE, FLAVIN-ADENINE DINUCLEOTIDE, NRH dehydrogenase [quinone] 2, ...
Authors:Fu, Y, Buryanovskyy, L, Zhang, Z.
Deposit date:2004-09-21
Release date:2005-08-30
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of quinone reductase 2 in complex with cancer prodrug CB1954
Biochem.Biophys.Res.Commun., 336, 2005
4Q7H
DownloadVisualize
BU of 4q7h by Molmil
Crystal structure of SAMHD1 catalytic core with GTP
Descriptor: Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, GUANOSINE-5'-TRIPHOSPHATE, ZINC ION
Authors:Xiaohong, Q, Yanhong, L, Jia, K, Xiaofang, Y.
Deposit date:2014-04-25
Release date:2015-05-27
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.587 Å)
Cite:Structural insight into activation mechanism of SAMHD1
To be Published

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon