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PDB: 165 results

5ZC0
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BU of 5zc0 by Molmil
Crystal structure of Xenopus embryonic epidermal lectin in complex with Samarium ions
Descriptor: CALCIUM ION, SAMARIUM (III) ION, Xenopus Embryonic Epidermal Lectin
Authors:Wangkanont, K.
Deposit date:2018-02-14
Release date:2018-06-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural stabilities of calcium proteins: Human intelectin-1 and frog lectin XEEL
J. Inorg. Biochem., 185, 2018
7BVK
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BU of 7bvk by Molmil
UDP-N-acetylglucosamine 3-dehydrogenase GnnA from Acidithiobacillus ferrooxidans (P212121)
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Oxidoreductase, NAD-binding, ...
Authors:Wangkanont, K.
Deposit date:2020-04-11
Release date:2020-12-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Biochemical and Structural Investigation of GnnA in the Lipopolysaccharide Biosynthesis Pathway of Acidithiobacillus ferrooxidans .
Acs Chem.Biol., 15, 2020
7BVJ
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BU of 7bvj by Molmil
UDP-N-acetylglucosamine 3-dehydrogenase GnnA from Acidithiobacillus ferrooxidans (P21)
Descriptor: (2R,3R)-2,3-bis(oxidanyl)butane-1,4-disulfonic acid, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Oxidoreductase, ...
Authors:Wangkanont, K.
Deposit date:2020-04-10
Release date:2020-12-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Biochemical and Structural Investigation of GnnA in the Lipopolysaccharide Biosynthesis Pathway of Acidithiobacillus ferrooxidans .
Acs Chem.Biol., 15, 2020
6M6T
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BU of 6m6t by Molmil
Amylomaltase from Streptococcus agalactiae in complex with acarbose
Descriptor: 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-1,5-anhydro-D-glucitol, 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ...
Authors:Wangkanont, K, Tumhom, S, Pongsawasdi, P.
Deposit date:2020-03-16
Release date:2021-03-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Streptococcus agalactiae amylomaltase offers insight into the transglycosylation mechanism and the molecular basis of thermostability among amylomaltases.
Sci Rep, 11, 2021
4MUY
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BU of 4muy by Molmil
IspH in complex with pyridin-4-ylmethyl diphosphate
Descriptor: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, FE3-S4 CLUSTER, pyridin-4-ylmethyl trihydrogen diphosphate
Authors:Span, I, Wang, K, Song, Y, Eisenreich, W, Bacher, A, Oldfield, E, Groll, M.
Deposit date:2013-09-23
Release date:2014-06-11
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Insights into the Binding of Pyridines to the Iron-Sulfur Enzyme IspH.
J.Am.Chem.Soc., 136, 2014
5XHX
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BU of 5xhx by Molmil
Crystal structure of VqsR LBD domain from Pseudomonas aeruginosa
Descriptor: Helix-turn-helix transcriptional regulator
Authors:Gu, L, He, Q, Wang, K, Wang, F.
Deposit date:2017-04-24
Release date:2017-05-24
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of VqsR LBD domain from Pseudomonas aeruginosa
To Be Published
6VYI
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BU of 6vyi by Molmil
Cryo-EM structure of human diacylglycerol O-acyltransferase 1
Descriptor: Diacylglycerol O-acyltransferase 1, [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate
Authors:Sui, X, Wang, K, Gluchowski, N, Liao, M, Walther, C.T, Farese, V.R.
Deposit date:2020-02-26
Release date:2020-05-13
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structure and catalytic mechanism of a human triacylglycerol-synthesis enzyme.
Nature, 581, 2020
4M48
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BU of 4m48 by Molmil
X-ray structure of dopamine transporter elucidates antidepressant mechanism
Descriptor: 9D5 antibody, heavy chain, light chain, ...
Authors:Gouaux, E, Penmatsa, A, Wang, K.
Deposit date:2013-08-06
Release date:2013-09-18
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.955 Å)
Cite:X-ray structure of dopamine transporter elucidates antidepressant mechanism.
Nature, 503, 2013
8HAY
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BU of 8hay by Molmil
d4-bound btDPP4
Descriptor: (1~{R})-1-[[4-[5-[[(1~{R})-6,7-dimethoxy-2-methyl-3,4-dihydro-1~{H}-isoquinolin-1-yl]methyl]-2-methoxy-phenoxy]phenyl]methyl]-6,7-dimethoxy-2-methyl-3,4-dihydro-1~{H}-isoquinoline, btDPP4
Authors:Hang, J, Jiang, C, Wang, K, Zhang, Z, Guo, F, Liu, J, Wang, G, Lei, X, Gonzalez, F, Qiao, J.
Deposit date:2022-10-27
Release date:2023-07-26
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.74 Å)
Cite:Microbial-host-isozyme analyses reveal microbial DPP4 as a potential antidiabetic target.
Science, 381, 2023
3DD4
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BU of 3dd4 by Molmil
Structural Basis of KChIP4a Modulation of Kv4.3 Slow Inactivation
Descriptor: CALCIUM ION, Kv channel-interacting protein 4
Authors:Chai, J, Wang, H, Wang, K.
Deposit date:2008-06-05
Release date:2008-12-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural Insights into KChIP4a Modulation of Kv4.3 Inactivation.
J.Biol.Chem., 284, 2009
8Q74
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BU of 8q74 by Molmil
Copper-transporting ATPase HMA4 in E1 state with Cu
Descriptor: COPPER (II) ION, Copper-transporting ATPase HMA4
Authors:Guo, Z, Gourdon, P, Wang, K.
Deposit date:2023-08-15
Release date:2024-06-26
Method:ELECTRON MICROSCOPY (3.68 Å)
Cite:Diverse roles of the metal binding domains and transport mechanism of copper transporting P-type ATPases.
Nat Commun, 15, 2024
8Q75
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BU of 8q75 by Molmil
Copper-transporting ATPase HMA4 in E2P state with AlF
Descriptor: Copper-transporting ATPase HMA4, MAGNESIUM ION, TETRAFLUOROALUMINATE ION
Authors:Guo, Z, Gourdon, P, Wang, K.
Deposit date:2023-08-15
Release date:2024-06-26
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Diverse roles of the metal binding domains and transport mechanism of copper transporting P-type ATPases.
Nat Commun, 15, 2024
8Q76
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BU of 8q76 by Molmil
Copper-transporting ATPase HMA4 in E2P state with BeF
Descriptor: Copper-transporting ATPase HMA4, MAGNESIUM ION
Authors:Guo, Z, Gourdon, P, Wang, K.
Deposit date:2023-08-15
Release date:2024-06-26
Method:ELECTRON MICROSCOPY (3.29 Å)
Cite:Diverse roles of the metal binding domains and transport mechanism of copper transporting P-type ATPases.
Nat Commun, 15, 2024
8Q73
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BU of 8q73 by Molmil
Copper-transporting ATPase HMA4 in E1 state apo
Descriptor: Copper-transporting ATPase HMA4
Authors:Guo, Z, Gourdon, P, Wang, K.
Deposit date:2023-08-15
Release date:2024-06-26
Method:ELECTRON MICROSCOPY (3.58 Å)
Cite:Diverse roles of the metal binding domains and transport mechanism of copper transporting P-type ATPases.
Nat Commun, 15, 2024
8HHT
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BU of 8hht by Molmil
Crystal structure of the SARS-CoV-2 main protease in complex with Hit-1
Descriptor: 3C-like proteinase nsp5, DIMETHYL SULFOXIDE, ~{N}-[(2~{R},3~{S})-3-oxidanyl-4-oxidanylidene-1-phenyl-4-(1,3-thiazol-2-ylmethylamino)butan-2-yl]benzamide
Authors:Zeng, R, Xie, L.W, Huang, C, Wang, K, Liu, Y.Z, Yang, S.Y, Lei, J.
Deposit date:2022-11-17
Release date:2023-03-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:A new generation M pro inhibitor with potent activity against SARS-CoV-2 Omicron variants.
Signal Transduct Target Ther, 8, 2023
8HHU
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BU of 8hhu by Molmil
Crystal structure of the SARS-CoV-2 main protease in complex with SY110
Descriptor: (1~{R})-3,3-bis(fluoranyl)-~{N}-[(2~{R})-3-methoxy-1-oxidanylidene-1-[[(2~{R},3~{S})-3-oxidanyl-4-oxidanylidene-1-phenyl-4-(1,3-thiazol-2-ylmethylamino)butan-2-yl]amino]propan-2-yl]cyclohexane-1-carboxamide, 3C-like proteinase nsp5
Authors:Zeng, R, Xie, L.W, Huang, C, Wang, K, Liu, Y.Z, Yang, S.Y, Lei, J.
Deposit date:2022-11-17
Release date:2023-03-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.258 Å)
Cite:A new generation M pro inhibitor with potent activity against SARS-CoV-2 Omicron variants.
Signal Transduct Target Ther, 8, 2023
3FXM
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BU of 3fxm by Molmil
Crystal Structure of Human Protein phosphatase 1A (PPM1A) Bound with Citrate at 10 mM of Mn2+
Descriptor: CITRATE ANION, MANGANESE (II) ION, PHOSPHATE ION, ...
Authors:Hu, T, Wang, L, Wang, K, Jiang, H, Shen, X.
Deposit date:2009-01-21
Release date:2010-01-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for the Mn2+-dependent activation of human PPM1A
To be published
3FXJ
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BU of 3fxj by Molmil
Crystal Structure of Human Protein phosphatase 1A (PPM1A) Bound with Phosphate at 3 mM of Mn2+
Descriptor: MANGANESE (II) ION, PHOSPHATE ION, Protein phosphatase 1A
Authors:Hu, T, Wang, L, Wang, K, Jiang, H, Shen, X.
Deposit date:2009-01-21
Release date:2010-01-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for the Mn2+-dependent activation of human PPM1A
To be published
3FXK
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BU of 3fxk by Molmil
Crystal Structure of Human Protein phosphatase 1A (PPM1A) Bound with Phosphate at 10 mM of Mn2+
Descriptor: MANGANESE (II) ION, PHOSPHATE ION, Protein phosphatase 1A
Authors:Hu, T, Wang, L, Wang, K, Jiang, H, Shen, X.
Deposit date:2009-01-21
Release date:2010-01-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for the Mn2+-dependent activation of human PPM1A
To be published
3FXL
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BU of 3fxl by Molmil
Crystal Structure of Human Protein phosphatase 1A (PPM1A) Bound with Citrate at 1 mM of Mn2+
Descriptor: CITRATE ANION, MANGANESE (II) ION, PHOSPHATE ION, ...
Authors:Hu, T, Wang, L, Wang, K, Jiang, H, Shen, X.
Deposit date:2009-01-21
Release date:2010-01-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for the Mn2+-dependent activation of human PPM1A
To be published
3FXO
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BU of 3fxo by Molmil
Crystal Structure of Human Protein phosphatase 1A (PPM1A) Bound with Phosphate at 1 mM of Mn2+
Descriptor: MANGANESE (II) ION, PHOSPHATE ION, Protein phosphatase 1A
Authors:Hu, T, Wang, L, Wang, K, Jiang, H, Shen, X.
Deposit date:2009-01-21
Release date:2010-01-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for the Mn2+-dependent activation of human PPM1A
To be published
3NFC
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BU of 3nfc by Molmil
Crystal structure of E.coli MazF Toxin
Descriptor: PemK-like protein 1
Authors:Wang, X, Wang, K, Su, X, Zhang, J.
Deposit date:2010-06-10
Release date:2011-06-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Biochemical and Structural Analysis of E. coli MazF Toxin
To be Published
7F3Q
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BU of 7f3q by Molmil
SARS-CoV-2 RBD in complex with A5-10 Fab and A34-2 Fab
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of A34-2 Fab, ...
Authors:Dou, Y, Wang, X, Liu, P, Lu, B, Wang, K.
Deposit date:2021-06-16
Release date:2022-06-22
Last modified:2024-01-24
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Development of neutralizing antibodies against SARS-CoV-2, using a high-throughput single-B-cell cloning method.
Antib Ther, 6, 2023
8QKK
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BU of 8qkk by Molmil
Cryo-EM structure of MmpL3 from Mycobacterium smegmatis reconstituted into peptidiscs
Descriptor: Trehalose monomycolate exporter MmpL3
Authors:Couston, J, Guo, Z, Wang, K, Gourdon, P.E, Blaise, M.
Deposit date:2023-09-15
Release date:2023-11-15
Last modified:2023-12-13
Method:ELECTRON MICROSCOPY (3.23 Å)
Cite:Cryo-EM structure of the trehalose monomycolate transporter, MmpL3, reconstituted into peptidiscs.
Curr Res Struct Biol, 6, 2023
6VZ1
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BU of 6vz1 by Molmil
Cryo-EM structure of human diacylglycerol O-acyltransferase 1 complexed with acyl-CoA substrate
Descriptor: Diacylglycerol O-acyltransferase 1, S-{(3R,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} (9Z)-octadec-9-enethioate (non-preferred name), [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate
Authors:Sui, X, Wang, K, Gluchowski, N, Liao, M, Walther, C.T, Farese Jr, V.R.
Deposit date:2020-02-27
Release date:2020-05-13
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure and catalytic mechanism of a human triacylglycerol-synthesis enzyme.
Nature, 581, 2020

223532

数据于2024-08-07公开中

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