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PDB: 578 results

7YEJ
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BU of 7yej by Molmil
TR-SFX MmCPDII-DNA complex: 100 ns time-point collected in SACLA. Includes 100 ns, dark, and extrapolated structure factors
Descriptor: CPD photolesion containing DNA after repair, Deoxyribodipyrimidine photo-lyase, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Maestre-Reyna, M, Wang, P.-H, Nango, E, Hosokawa, Y, Saft, M, Furrer, A, Yang, C.-H, Ngura Putu, E.P.G, Wu, W.-J, Emmerich, H.-J, Engilberge, S, Caramello, N, Wranik, M, Glover, H.L, Franz-Badur, S, Wu, H.-Y, Lee, C.-C, Huang, W.-C, Huang, K.-F, Chang, Y.-K, Liao, J.-H, Weng, J.-H, Gad, W, Chang, C.-W, Pang, A.H, Gashi, D, Beale, E, Ozerov, D, Milne, C, Cirelli, C, Bacellar, C, Sugahara, M, Owada, S, Joti, Y, Yamashita, A, Tanaka, R, Tanaka, T, Luo, F.J, Tono, K, Kiontke, S, Spadaccini, R, Royant, A, Yamamoto, J, Iwata, S, Standfuss, J, Essen, L.-O, Bessho, Y, Tsai, M.-D.
Deposit date:2022-07-05
Release date:2023-11-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Visualizing the DNA repair process by a photolyase at atomic resolution.
Science, 382, 2023
7YDZ
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BU of 7ydz by Molmil
TR-SFX MmCPDII-DNA complex: dark state as collected in SACLA
Descriptor: CPD photolesion containing DNA, Deoxyribodipyrimidine photo-lyase, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Maestre-Reyna, M, Wang, P.-H, Nango, E, Hosokawa, Y, Saft, M, Furrer, A, Yang, C.-H, Ngura Putu, E.P.G, Wu, W.-J, Emmerich, H.-J, Engilberge, S, Caramello, N, Wranik, M, Glover, H.L, Franz-Badur, S, Wu, H.-Y, Lee, C.-C, Huang, W.-C, Huang, K.-F, Chang, Y.-K, Liao, J.-H, Weng, J.-H, Gad, W, Chang, C.-W, Pang, A.H, Gashi, D, Beale, E, Ozerov, D, Milne, C, Cirelli, C, Bacellar, C, Sugahara, M, Owada, S, Joti, Y, Yamashita, A, Tanaka, R, Tanaka, T, Luo, F.J, Tono, K, Kiontke, S, Spadaccini, R, Royant, A, Yamamoto, J, Iwata, S, Standfuss, J, Essen, L.-O, Bessho, Y, Tsai, M.-D.
Deposit date:2022-07-05
Release date:2023-11-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Visualizing the DNA repair process by a photolyase at atomic resolution.
Science, 382, 2023
7YEE
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BU of 7yee by Molmil
TR-SFX MmCPDII-DNA complex: 10 ns snapshot. Includes 10 ns, dark, and extrapolated structure factors. Collected at SwissFEL
Descriptor: CPD photolesion containing DNA, Deoxyribodipyrimidine photolyase, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Maestre-Reyna, M, Wang, P.-H, Nango, E, Hosokawa, Y, Saft, M, Furrer, A, Yang, C.-H, Ngura Putu, E.P.G, Wu, W.-J, Emmerich, H.-J, Engilberge, S, Caramello, N, Wranik, M, Glover, H.L, Franz-Badur, S, Wu, H.-Y, Lee, C.-C, Huang, W.-C, Huang, K.-F, Chang, Y.-K, Liao, J.-H, Weng, J.-H, Gad, W, Chang, C.-W, Pang, A.H, Gashi, D, Beale, E, Ozerov, D, Milne, C, Cirelli, C, Bacellar, C, Sugahara, M, Owada, S, Joti, Y, Yamashita, A, Tanaka, R, Tanaka, T, Luo, F.J, Tono, K, Kiontke, S, Spadaccini, R, Royant, A, Yamamoto, J, Iwata, S, Standfuss, J, Essen, L.-O, Bessho, Y, Tsai, M.-D.
Deposit date:2022-07-05
Release date:2023-11-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Visualizing the DNA repair process by a photolyase at atomic resolution.
Science, 382, 2023
8G13
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BU of 8g13 by Molmil
CryoEM structure of cytosolic GAPDH under 8h Oxidative Stress
Descriptor: Glyceraldehyde-3-phosphate dehydrogenase
Authors:Choi, W.Y, Wu, H, Cheng, Y.F.
Deposit date:2023-02-01
Release date:2023-12-27
Method:ELECTRON MICROSCOPY (2.3 Å)
Cite:Efficient tagging of endogenous proteins in human cell lines for structural studies by single-particle cryo-EM.
Proc.Natl.Acad.Sci.USA, 120, 2023
8G14
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BU of 8g14 by Molmil
CryoEM structure of cytosolic GAPDH under 8h Oxidative Stress, class2
Descriptor: Glyceraldehyde-3-phosphate dehydrogenase
Authors:Choi, W.Y, Wu, H, Cheng, Y.F.
Deposit date:2023-02-01
Release date:2023-12-27
Method:ELECTRON MICROSCOPY (2.3 Å)
Cite:Efficient tagging of endogenous proteins in human cell lines for structural studies by single-particle cryo-EM.
Proc.Natl.Acad.Sci.USA, 120, 2023
5HEC
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BU of 5hec by Molmil
CgT structure in dimer
Descriptor: Putative glycosyltransferase (GalT1)
Authors:Zhang, H, Wu, H.
Deposit date:2016-01-05
Release date:2016-08-31
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.395 Å)
Cite:New Helical Binding Domain Mediates a Glycosyltransferase Activity of a Bifunctional Protein.
J.Biol.Chem., 291, 2016
8G15
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BU of 8g15 by Molmil
CryoEM structure of nuclear GAPDH under 24h Oxidative Stress
Descriptor: Glyceraldehyde-3-phosphate dehydrogenase
Authors:Choi, W.Y, Wu, H, Cheng, Y.F.
Deposit date:2023-02-01
Release date:2023-12-27
Method:ELECTRON MICROSCOPY (2.07 Å)
Cite:Efficient tagging of endogenous proteins in human cell lines for structural studies by single-particle cryo-EM.
Proc.Natl.Acad.Sci.USA, 120, 2023
8G16
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BU of 8g16 by Molmil
CryoEM structure of cytoplasmic GAPDH under 24h Oxidative Stress
Descriptor: Glyceraldehyde-3-phosphate dehydrogenase
Authors:Choi, W.Y, Wu, H, Cheng, Y.F.
Deposit date:2023-02-01
Release date:2023-12-27
Method:ELECTRON MICROSCOPY (2.07 Å)
Cite:Efficient tagging of endogenous proteins in human cell lines for structural studies by single-particle cryo-EM.
Proc.Natl.Acad.Sci.USA, 120, 2023
8G12
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BU of 8g12 by Molmil
CryoEM structure of nuclear GAPDH under 8h Oxidative Stress
Descriptor: Glyceraldehyde-3-phosphate dehydrogenase
Authors:Choi, W.Y, Wu, H, Cheng, Y.F.
Deposit date:2023-02-01
Release date:2023-12-27
Method:ELECTRON MICROSCOPY (2.17 Å)
Cite:Efficient tagging of endogenous proteins in human cell lines for structural studies by single-particle cryo-EM.
Proc.Natl.Acad.Sci.USA, 120, 2023
8G17
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BU of 8g17 by Molmil
CryoEM structure of wild-type GAPDH
Descriptor: Glyceraldehyde-3-phosphate dehydrogenase
Authors:Choi, W.Y, Wu, H, Cheng, Y.F.
Deposit date:2023-02-01
Release date:2023-12-27
Method:ELECTRON MICROSCOPY (1.98 Å)
Cite:Efficient tagging of endogenous proteins in human cell lines for structural studies by single-particle cryo-EM.
Proc.Natl.Acad.Sci.USA, 120, 2023
2IGQ
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BU of 2igq by Molmil
Human euchromatic histone methyltransferase 1
Descriptor: S-ADENOSYL-L-HOMOCYSTEINE, ZINC ION, euchromatic histone methyltransferase 1
Authors:Min, J, Wu, H, Antoshenko, T, Loppnau, P, Weigelt, J, Sundstrom, M, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Plotnikov, A.N, Structural Genomics Consortium (SGC)
Deposit date:2006-09-23
Release date:2006-10-24
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural biology of human H3K9 methyltransferases
Plos One, 5, 2010
7VJ6
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BU of 7vj6 by Molmil
SFX structure of archaeal class II CPD photolyase from Methanosarcina mazei in the semiquinone state
Descriptor: DNA photolyase, FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION
Authors:Maestre-Reyna, M, Yang, C.-H, Huang, W.C, Nango, E, Gusti-Ngurah-Putu, E.-P, Franz-Badur, S, Wu, W.-J, Wu, H.-Y, Wang, P.-H, Liao, J.-H, Lee, C.-C, Huang, K.-F, Chang, Y.-K, Weng, J.-H, Sugahara, M, Owada, S, Joti, Y, Tanaka, R, Tono, K, Kiontke, S, Yamamoto, J, Iwata, S, Essen, L.-O, Bessho, Y, Tsai, M.-D.
Deposit date:2021-09-28
Release date:2022-03-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Serial crystallography captures dynamic control of sequential electron and proton transfer events in a flavoenzyme.
Nat.Chem., 14, 2022
2IIP
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BU of 2iip by Molmil
Human Nicotinamide N-methyltransferase
Descriptor: Nicotinamide N-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Bernstein, G, Min, J, Wu, H, Tempel, W, Zeng, H, Loppnau, P, Avvakumov, G.V, Wasney, G, Weigelt, J, Sundstrom, M, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Plotnikov, A.N, Structural Genomics Consortium (SGC)
Deposit date:2006-09-28
Release date:2006-10-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The Crystal Structure of Human Nicotinamide N-methyltransferase in complex with SAH
To be Published
7VJ7
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BU of 7vj7 by Molmil
SFX structure of archaeal class II CPD photolyase from Methanosarcina mazei in the fully reduced state
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, DNA photolyase, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Maestre-Reyna, M, Yang, C.-H, Huang, W.C, Nango, E, Gusti-Ngurah-Putu, E.-P, Franz-Badur, S, Wu, W.-J, Wu, H.-Y, Wang, P.-H, Liao, J.-H, Lee, C.-C, Huang, K.-F, Chang, Y.-K, Weng, J.-H, Sugahara, M, Owada, S, Joti, Y, Tanaka, R, Tono, K, Kiontke, S, Yamamoto, J, Iwata, S, Essen, L.-O, Bessho, Y, Tsai, M.-D.
Deposit date:2021-09-28
Release date:2022-03-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Serial crystallography captures dynamic control of sequential electron and proton transfer events in a flavoenzyme.
Nat.Chem., 14, 2022
7VJ8
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BU of 7vj8 by Molmil
SFX structure of archaeal class II CPD photolyase from Methanosarcina mazei in the oxidized state
Descriptor: DNA photolyase, FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION
Authors:Maestre-Reyna, M, Yang, C.-H, Huang, W.C, Nango, E, Gusti-Ngurah-Putu, E.-P, Franz-Badur, S, Wu, W.-J, Wu, H.-Y, Wang, P.-H, Liao, J.-H, Lee, C.-C, Huang, K.-F, Chang, Y.-K, Weng, J.-H, Sugahara, M, Owada, S, Joti, Y, Tanaka, R, Tono, K, Kiontke, S, Yamamoto, J, Iwata, S, Essen, L.-O, Bessho, Y, Tsai, M.-D.
Deposit date:2021-09-28
Release date:2022-03-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Serial crystallography captures dynamic control of sequential electron and proton transfer events in a flavoenzyme.
Nat.Chem., 14, 2022
2H00
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BU of 2h00 by Molmil
Human methyltransferase 10 domain containing protein
Descriptor: (2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL, CHLORIDE ION, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Min, J.R, Wu, H, Zeng, H, Loppnau, P, Weigelt, J, Sundstrom, M, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Plotnikov, A.N, Structural Genomics Consortium (SGC)
Deposit date:2006-05-12
Release date:2006-06-13
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Crystal Structure of Human methyltransferase 10 domain containing protein.
To be Published
3MEK
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BU of 3mek by Molmil
Crystal Structure of Human Histone-Lysine N-methyltransferase SMYD3 in Complex with S-adenosyl-L-methionine
Descriptor: S-ADENOSYLMETHIONINE, SET and MYND domain-containing protein 3, ZINC ION
Authors:Lam, R, Dombrovski, L, Li, Y, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Min, J, Wu, H, Structural Genomics Consortium (SGC)
Deposit date:2010-03-31
Release date:2010-04-14
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Human Histone-Lysine N-methyltransferase SMYD3 in Complex with S-adenosyl-L-methionine
To be Published
1SO8
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BU of 1so8 by Molmil
Abeta-bound human ABAD structure [also known as 3-hydroxyacyl-CoA dehydrogenase type II (Type II HADH), Endoplasmic reticulum-associated amyloid beta-peptide binding protein (ERAB)]
Descriptor: 3-hydroxyacyl-CoA dehydrogenase type II, CHLORIDE ION, SODIUM ION
Authors:Lustbader, J.W, Cirilli, M, Wu, H.
Deposit date:2004-03-13
Release date:2004-05-11
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:ABAD directly links Abeta to mitochondrial toxicity in Alzheimer's disease.
Science, 304, 2004
2I62
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BU of 2i62 by Molmil
Mouse Nicotinamide N-methyltransferase
Descriptor: Nicotinamide N-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Min, J, Wu, H, Zeng, H, Loppnau, P, Weigelt, J, Sundstrom, M, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Plotnikov, A.N, Structural Genomics Consortium (SGC)
Deposit date:2006-08-27
Release date:2006-09-12
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Crystal Structure of Mouse Nicotinamide N-methyltransferase in complex with SAH
To be Published
2HUZ
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BU of 2huz by Molmil
Crystal structure of GNPNAT1
Descriptor: Glucosamine 6-phosphate N-acetyltransferase
Authors:Min, J, Wu, H, Zeng, H, Loppnau, P, Weigelt, J, Sundstrom, M, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Plotnikov, A.N, Structural Genomics Consortium (SGC)
Deposit date:2006-07-27
Release date:2006-08-08
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.67 Å)
Cite:Crystal structure of glucosamine-phosphate N-acetyltransferase 1
To be Published
3HCS
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BU of 3hcs by Molmil
Crystal structure of the N-terminal domain of TRAF6
Descriptor: TNF receptor-associated factor 6, ZINC ION
Authors:Yin, Q, Lin, S.-C, Lamothe, B, Lu, M, Lo, Y.-C, Hura, G, Zheng, L, Rich, R.L, Campos, A.D, Myszka, D.G, Lenardo, M.J, Darnay, B.G, Wu, H.
Deposit date:2009-05-06
Release date:2009-05-26
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:E2 interaction and dimerization in the crystal structure of TRAF6.
Nat.Struct.Mol.Biol., 16, 2009
3HCU
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BU of 3hcu by Molmil
Crystal structure of TRAF6 in complex with Ubc13 in the C2 space group
Descriptor: TNF receptor-associated factor 6, Ubiquitin-conjugating enzyme E2 N, ZINC ION
Authors:Yin, Q, Lin, S.-C, Lamothe, B, Lu, M, Lo, Y.-C, Hura, G, Zheng, L, Rich, R.L, Campos, A.D, Myszka, D.G, Lenardo, M.J, Darnay, B.G, Wu, H.
Deposit date:2009-05-06
Release date:2009-05-26
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:E2 interaction and dimerization in the crystal structure of TRAF6.
Nat.Struct.Mol.Biol., 16, 2009
2IPX
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BU of 2ipx by Molmil
Human Fibrillarin
Descriptor: 5'-DEOXY-5'-METHYLTHIOADENOSINE, CALCIUM ION, rRNA 2'-O-methyltransferase fibrillarin
Authors:Min, J, Wu, H, Zeng, H, Loppnau, P, Weigelt, J, Sundstrom, M, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Plotnikov, A.N, Structural Genomics Consortium (SGC)
Deposit date:2006-10-12
Release date:2006-10-24
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:The Crystal Structure of Human Fibrillarin in complex with SAH
To be Published
3DKB
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BU of 3dkb by Molmil
Crystal Structure of A20, 2.5 angstrom
Descriptor: Tumor necrosis factor, alpha-induced protein 3
Authors:Lin, S.-C, Chung, J.Y, Lo, Y.-C, Wu, H.
Deposit date:2008-06-24
Release date:2008-07-08
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Molecular basis for the unique deubiquitinating activity of the NF-kappaB inhibitor A20
J.Mol.Biol., 376, 2008
5HEA
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BU of 5hea by Molmil
CgT structure in hexamer
Descriptor: Putative glycosyltransferase (GalT1)
Authors:Zhang, H, Wu, H.
Deposit date:2016-01-05
Release date:2016-08-31
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.003 Å)
Cite:A new helical binding domain mediates a glycosyltransferase activity of a bifunctional protein
To Be Published

221051

PDB entries from 2024-06-12

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