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PDB: 12895 results

4M56
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BU of 4m56 by Molmil
The Structure of Wild-type MalL from Bacillus subtilis
Descriptor: D-glucose, GLYCEROL, Oligo-1,6-glucosidase 1, ...
Authors:Hobbs, J.K, Jiao, W, Easter, A.D, Parker, E.J, Schipper, L.A, Arcus, V.L.
Deposit date:2013-08-08
Release date:2013-10-02
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Change in heat capacity for enzyme catalysis determines temperature dependence of enzyme catalyzed rates.
Acs Chem.Biol., 8, 2013
4BV7
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BU of 4bv7 by Molmil
Identification of small molecule inhibitors selective for apo(a) kringles KIV-7, KIV-10 and KV.
Descriptor: 3-(4-piperidyl)propanoic acid, ACETATE ION, APOLIPOPROTEIN(A)
Authors:Sandmark, J, Althage, M, Andersson, G.M.K, Antonsson, T, Blaho, S, Bodin, C, Bostrom, J, Chen, Y, Dahlen, A, Eriksson, P.O, Evertsson, E, Fex, T, Fjellstrom, O, Gustafsson, D, Hallberg, C, Hicks, R, Jarkvist, E, Johansson, C, Kalies, I, Kang, D, Svalstedt Karlsson, B, Kartberg, F, Legnehed, A, Lindqvist, A.M, Martinsson, S.A, Moberg, A, Petersson, A.U, Ridderstrom, M, Thelin, A, Tigerstrom, A, Vinblad, J, Xu, B, Knecht, W.
Deposit date:2013-06-25
Release date:2014-07-09
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Small Molecules Used to Decipher the Pathophysiological Roles of the Kringle Domains Kiv-7, - 10 and Kv of Apolipoprotein(A)
To be Published
8SR7
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BU of 8sr7 by Molmil
Cryo-EM structure of TRPM2 chanzyme in the presence of Magnesium, Adenosine monophosphate, and Ribose-5-phosphate
Descriptor: 5-O-phosphono-beta-D-ribofuranose, ADENOSINE MONOPHOSPHATE, CHOLESTEROL, ...
Authors:Huang, Y, Kumar, S, Lu, W, Du, J.
Deposit date:2023-05-05
Release date:2024-05-08
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (1.97 Å)
Cite:Coupling enzymatic activity and gating in an ancient TRPM chanzyme and its molecular evolution.
Nat.Struct.Mol.Biol., 2024
8TNW
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BU of 8tnw by Molmil
Substrate Binding Plasticity Revealed by Cryo-EM Structures of SLC26A2
Descriptor: CHLORIDE ION, Sulfate transporter
Authors:Hu, W, Song, A.
Deposit date:2023-08-02
Release date:2024-05-22
Method:ELECTRON MICROSCOPY (3.17 Å)
Cite:Substrate binding plasticity revealed by Cryo-EM structures of SLC26A2.
Nat Commun, 15, 2024
4HCB
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BU of 4hcb by Molmil
The metal-free form of crystal structure of E.coli ExoI-ssDNA complex
Descriptor: DNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), Exodeoxyribonuclease I, GLYCEROL, ...
Authors:Qiu, R, Wei, J, Lou, T, Liu, M, Ji, C, Gong, W.
Deposit date:2012-09-29
Release date:2013-10-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:The structures of Escherichia coli exonuclease I in complex with the single strand DNA
To be published
8SRB
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BU of 8srb by Molmil
Cryo-EM structure of TRPM2 chanzyme in the presence of EDTA and ADP-ribose
Descriptor: ADENOSINE-5-DIPHOSPHORIBOSE, CHOLESTEROL, TRPM2 chanzyme
Authors:Huang, Y, Kumar, S, Lu, W, Du, J.
Deposit date:2023-05-05
Release date:2024-05-08
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.82 Å)
Cite:Coupling enzymatic activity and gating in an ancient TRPM chanzyme and its molecular evolution.
Nat.Struct.Mol.Biol., 2024
8TNY
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BU of 8tny by Molmil
Substrate Binding Plasticity Revealed by Cryo-EM Structures of SLC26A2
Descriptor: SULFATE ION, Sulfate transporter
Authors:Hu, W, Song, A.
Deposit date:2023-08-02
Release date:2024-05-22
Method:ELECTRON MICROSCOPY (3.55 Å)
Cite:Substrate binding plasticity revealed by Cryo-EM structures of SLC26A2.
Nat Commun, 15, 2024
4M6A
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BU of 4m6a by Molmil
N-Terminal beta-Strand Swapping in a Consensus Derived Alternative Scaffold Driven by Stabilizing Hydrophobic Interactions
Descriptor: Tencon
Authors:Luo, J, Teplyakov, A, Obmolova, G, Malia, T.J, Chan, W, Jocobs, S.A, O'neil, K.T, Gilliland, G.L.
Deposit date:2013-08-09
Release date:2014-02-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:N-terminal beta-strand swapping in a consensus-derived alternative scaffold driven by stabilizing hydrophobic interactions.
Proteins, 82, 2014
4BMA
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BU of 4bma by Molmil
structural of Aspergillus fumigatus UDP-N-acetylglucosamine pyrophosphorylase
Descriptor: GLYCEROL, UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE
Authors:Fang, W, Raimi, O.G, HurtadoGuerrero, R, vanAalten, D.M.F.
Deposit date:2013-05-07
Release date:2013-05-15
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Genetic and Structural Validation of Aspergillus Fumigatus Udp-N-Acetylglucosamine Pyrophosphorylase as an Antifungal Target.
Mol.Microbiol., 89, 2013
8SRI
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BU of 8sri by Molmil
Cryo-EM structure of TRPM2 chanzyme (E1114A) in the presence of Magnesium and ADP-ribose, closed state
Descriptor: ADENOSINE-5-DIPHOSPHORIBOSE, CHOLESTEROL, MAGNESIUM ION, ...
Authors:Huang, Y, Kumar, S, Lu, W, Du, J.
Deposit date:2023-05-05
Release date:2024-05-15
Method:ELECTRON MICROSCOPY (2.73 Å)
Cite:Coupling enzymatic activity and gating in an ancient TRPM chanzyme and its molecular evolution
To Be Published
8SRH
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BU of 8srh by Molmil
Cryo-EM structure of TRPM2 chanzyme (E1114A) in the presence of Magnesium and ADP-ribose, open state
Descriptor: ADENOSINE-5-DIPHOSPHORIBOSE, CHOLESTEROL, MAGNESIUM ION, ...
Authors:Huang, Y, Kumar, S, Lu, W, Du, J.
Deposit date:2023-05-05
Release date:2024-05-15
Method:ELECTRON MICROSCOPY (3.79 Å)
Cite:Coupling enzymatic activity and gating in an ancient TRPM chanzyme and its molecular evolution
To Be Published
8SRE
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BU of 8sre by Molmil
Cryo-EM structure of TRPM2 chanzyme in the presence of Magnesium and ADP-ribose, closed state
Descriptor: ADENOSINE-5-DIPHOSPHORIBOSE, CHOLESTEROL, MAGNESIUM ION, ...
Authors:Huang, Y, Kumar, S, Lu, W, Du, J.
Deposit date:2023-05-05
Release date:2024-05-15
Method:ELECTRON MICROSCOPY (2.52 Å)
Cite:Coupling enzymatic activity and gating in an ancient TRPM chanzyme and its molecular evolution
To Be Published
4M7P
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BU of 4m7p by Molmil
Ensemble refinement of protein crystal structure of macrolide glycosyltransferases OleD
Descriptor: Oleandomycin glycosyltransferase, SODIUM ION
Authors:Wang, F, Helmich, K.E, Xu, W, Singh, S, Olmos Jr, J.L, Martinez iii, E, Bingman, C.A, Thorson, J.S, Phillips Jr, G.N, Enzyme Discovery for Natural Product Biosynthesis (NatPro)
Deposit date:2013-08-12
Release date:2013-09-11
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Crystal structure of macrolide glycosyltransferases OleD
To be Published
4BVC
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BU of 4bvc by Molmil
Identification of small molecule inhibitors selective for apo(a) kringles KIV-7, KIV-10 and KV.
Descriptor: 3-(4-PIPERIDYL)-N-[2-(TRIFLUOROMETHOXY)PHENYL]SULFONYL-PROPANAMIDE, APOLIPOPROTEIN(A), CHLORIDE ION, ...
Authors:Sandmark, J, Althage, M, Andersson, G.M.K, Antonsson, T, Blaho, S, Bodin, C, Bostrom, J, Chen, Y, Dahlen, A, Eriksson, P.O, Evertsson, E, Fex, T, Fjellstrom, O, Gustafsson, D, Hallberg, C, Hicks, R, Jarkvist, E, Johansson, C, Kalies, I, Kang, D, Svalstedt Karlsson, B, Kartberg, F, Legnehed, A, Lindqvist, A.M, Martinsson, S.A, Moberg, A, Petersson, A.U, Ridderstrom, M, Thelin, A, Tigerstrom, A, Vinblad, J, Xu, B, Knecht, W.
Deposit date:2013-06-25
Release date:2014-07-09
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Small Molecules Used to Decipher the Pathophysiological Roles of the Kringle Domains Kiv-7, - 10 and Kv of Apolipoprotein(A)
To be Published
8TNX
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BU of 8tnx by Molmil
Substrate Binding Plasticity Revealed by Cryo-EM Structures of SLC26A2
Descriptor: OXALATE ION, Sulfate transporter
Authors:Hu, W, Song, A.
Deposit date:2023-08-02
Release date:2024-05-22
Method:ELECTRON MICROSCOPY (3.03 Å)
Cite:Substrate binding plasticity revealed by Cryo-EM structures of SLC26A2.
Nat Commun, 15, 2024
4GR1
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BU of 4gr1 by Molmil
THE BINDING OF THE RETRO-ANALOGUE OF GLUTATHIONE DISULFIDE TO GLUTATHIONE REDUCTASE
Descriptor: 4N-MALONYL-CYSTEINYL-2,4-DIAMINOBUTYRATE DISULFIDE, FLAVIN-ADENINE DINUCLEOTIDE, GLUTATHIONE REDUCTASE, ...
Authors:Schulz, G.E, Janes, W.
Deposit date:1990-03-26
Release date:1991-10-15
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The binding of the retro-analogue of glutathione disulfide to glutathione reductase.
J.Biol.Chem., 265, 1990
4HCK
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BU of 4hck by Molmil
HUMAN HCK SH3 DOMAIN, NMR, 25 STRUCTURES
Descriptor: HEMATOPOIETIC CELL KINASE
Authors:Horita, D.A, Baldisseri, D.M, Zhang, W, Altieri, A.S, Smithgall, T.E, Gmeiner, W.H, Byrd, R.A.
Deposit date:1998-03-09
Release date:1998-06-17
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure of the human Hck SH3 domain and identification of its ligand binding site.
J.Mol.Biol., 278, 1998
8SRK
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BU of 8srk by Molmil
Cryo-EM structure of TRPM2 chanzyme (without NUDT9-H domain) in the presence of Ca and ADP-ribose
Descriptor: ADENOSINE-5-DIPHOSPHORIBOSE, CALCIUM ION, CHOLESTEROL, ...
Authors:Huang, Y, Kumar, S, Lu, W, Du, J.
Deposit date:2023-05-05
Release date:2024-05-15
Method:ELECTRON MICROSCOPY (4.14 Å)
Cite:Coupling enzymatic activity and gating in an ancient TRPM chanzyme and its molecular evolution
To Be Published
8SW6
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BU of 8sw6 by Molmil
Protein Phosphatase 1 in complex with PP1-specific Phosphatase targeting peptide (PhosTAP) version 3
Descriptor: CHLORIDE ION, MANGANESE (II) ION, PP1-specific Phosphatase-Targeting Peptide version 3, ...
Authors:Choy, M.S, Peti, W, Page, R.
Deposit date:2023-05-17
Release date:2024-05-29
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:A Protein Phosphatase 1 specific phosphatase targeting peptide (PhosTAP) to identify the PP1 phosphatome
To Be Published
3QXJ
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BU of 3qxj by Molmil
Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with GTP
Descriptor: 1,2-ETHANEDIOL, Dethiobiotin synthetase, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Klimecka, M.M, Porebski, P.J, Chruszcz, M, Murzyn, K, Joachimiak, A, Minor, W, Midwest Center for Structural Genomics (MCSG)
Deposit date:2011-03-01
Release date:2011-03-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Structural characterization of Helicobacter pylori dethiobiotin synthetase reveals differences between family members.
Febs J., 279, 2012
4HMD
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BU of 4hmd by Molmil
Crystal structure of cold-adapted chitinase from Moritella marina with a reaction intermediate - oxazolinium ion (NGO)
Descriptor: 2-METHYL-4,5-DIHYDRO-(1,2-DIDEOXY-ALPHA-D-GLUCOPYRANOSO)[2,1-D]-1,3-OXAZOLE, 2-acetamido-2-deoxy-beta-D-glucopyranose, Chitinase 60, ...
Authors:Malecki, P.H, Vorgias, C.E, Raczynska, J.E, Rypniewski, W.
Deposit date:2012-10-18
Release date:2013-05-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Structure of a complete four-domain chitinase from Moritella marina, a marine psychrophilic bacterium
Acta Crystallogr.,Sect.D, 69, 2013
3QY0
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BU of 3qy0 by Molmil
Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with GDP
Descriptor: 1,2-ETHANEDIOL, Dethiobiotin synthetase, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Porebski, P.J, Klimecka, M.M, Chruszcz, M, Murzyn, K, Joachimiak, A, Minor, W, Midwest Center for Structural Genomics (MCSG)
Deposit date:2011-03-02
Release date:2011-03-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural characterization of Helicobacter pylori dethiobiotin synthetase reveals differences between family members.
Febs J., 279, 2012
4MGD
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BU of 4mgd by Molmil
Crystal structure of hERa-LBD (Y537S) in complex with HPTE
Descriptor: 1,2-ETHANEDIOL, 4,4'-(2,2,2-trichloroethane-1,1-diyl)diphenol, Estrogen receptor, ...
Authors:Delfosse, V, Grimaldi, M, Bourguet, W.
Deposit date:2013-08-28
Release date:2014-09-03
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and functional profiling of environmental ligands for estrogen receptors.
Environ.Health Perspect., 122, 2014
4HK4
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BU of 4hk4 by Molmil
Crystal structure of apo Tyrosine-tRNA ligase mutant protein
Descriptor: DI(HYDROXYETHYL)ETHER, Tyrosine--tRNA ligase
Authors:Yu, Y, Zhou, Q, Dong, J, Li, J, Xiaoxuan, L, Mukherjee, A, Ouyang, H, Nilges, M, Li, H, Gao, F, Gong, W, Lu, Y, Wang, J.
Deposit date:2012-10-15
Release date:2013-04-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.298 Å)
Cite:Crystal structure of apo Tyrosine-tRNA ligase mutant protein
To be Published
8SRJ
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BU of 8srj by Molmil
Cryo-EM structure of TRPM2 chanzyme (without NUDT9-H domain) in the presence of EDTA, apo state
Descriptor: CHOLESTEROL, TRPM2 chanzyme
Authors:Huang, Y, Kumar, S, Lu, W, Du, J.
Deposit date:2023-05-05
Release date:2024-05-15
Method:ELECTRON MICROSCOPY (3.74 Å)
Cite:Coupling enzymatic activity and gating in an ancient TRPM chanzyme and its molecular evolution
To Be Published

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