Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 12487 results

5I4R
DownloadVisualize
BU of 5i4r by Molmil
Contact-dependent inhibition system from Escherichia coli NC101 - ternary CdiA/CdiI/EF-Tu complex (trypsin-modified)
Descriptor: Contact-dependent inhibitor A, Contact-dependent inhibitor I, Elongation factor Tu, ...
Authors:Michalska, K, Stols, L, Eschenfeldt, W, Hayes, C.S, Goulding, C.W, Joachimiak, A, Midwest Center for Structural Genomics (MCSG), Structure-Function Analysis of Polymorphic CDI Toxin-Immunity Protein Complexes (UC4CDI)
Deposit date:2016-02-12
Release date:2017-06-28
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure of a novel antibacterial toxin that exploits elongation factor Tu to cleave specific transfer RNAs.
Nucleic Acids Res., 45, 2017
6OAW
DownloadVisualize
BU of 6oaw by Molmil
Crystal structure of a CRISPR Cas-related protein
Descriptor: UNKNOWN ATOM OR ION, WYL1
Authors:Zhang, H, Dong, C, Li, L, Tempel, W, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium, Structural Genomics Consortium (SGC)
Deposit date:2019-03-18
Release date:2019-04-10
Last modified:2019-06-12
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural insights into the modulatory role of the accessory protein WYL1 in the Type VI-D CRISPR-Cas system.
Nucleic Acids Res., 47, 2019
5IT5
DownloadVisualize
BU of 5it5 by Molmil
Thermus thermophilus PilB core ATPase region
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, ATP binding motif-containing protein PilF, MAGNESIUM ION, ...
Authors:Mancl, J, Robinson, H, Black, W, Yang, Z, Schubot, F.
Deposit date:2016-03-16
Release date:2016-10-19
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.648 Å)
Cite:Crystal Structure of a Type IV Pilus Assembly ATPase: Insights into the Molecular Mechanism of PilB from Thermus thermophilus.
Structure, 24, 2016
6UUZ
DownloadVisualize
BU of 6uuz by Molmil
Structure of ACLY in the presence of citrate and CoA
Descriptor: ATP-citrate synthase, COENZYME A
Authors:Xuepeng, W, Ronen, M.
Deposit date:2019-11-01
Release date:2020-01-01
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Molecular basis for acetyl-CoA production by ATP-citrate lyase.
Nat.Struct.Mol.Biol., 27, 2020
5JBM
DownloadVisualize
BU of 5jbm by Molmil
Crystal structgure of Cac1 C-terminus
Descriptor: Chromatin assembly factor 1 subunit p90
Authors:Churchill, M.E.A, Liu, W, Zhou, Y.
Deposit date:2016-04-13
Release date:2016-10-26
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3 Å)
Cite:The Cac1 subunit of histone chaperone CAF-1 organizes CAF-1-H3/H4 architecture and tetramerizes histones.
Elife, 5, 2016
6P1H
DownloadVisualize
BU of 6p1h by Molmil
Cryo-EM Structure of DNA Polymerase Delta Holoenzyme
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (30-MER), ...
Authors:Jain, R, Rice, W, Aggarwal, A.K.
Deposit date:2019-05-19
Release date:2019-10-02
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM structure and dynamics of eukaryotic DNA polymerase delta holoenzyme.
Nat.Struct.Mol.Biol., 26, 2019
7EB1
DownloadVisualize
BU of 7eb1 by Molmil
Solution NMR structure of the RRM domain of RNA binding protein RBM3 from homo sapiens
Descriptor: RNA-binding protein 3
Authors:Boral, S, Roy, S, Basak, A.J, Maiti, S, Lee, W, De, S.
Deposit date:2021-03-08
Release date:2021-12-08
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural and dynamic studies of the human RNA binding protein RBM3 reveals the molecular basis of its oligomerization and RNA recognition.
Febs J., 289, 2022
5IWL
DownloadVisualize
BU of 5iwl by Molmil
CD47-diabody complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 5F9 diabody, Leukocyte surface antigen CD47, ...
Authors:Di, W, Jude, K.M, Garcia, K.C.
Deposit date:2016-03-22
Release date:2016-06-29
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:CD47-blocking immunotherapies stimulate macrophage-mediated destruction of small-cell lung cancer.
J.Clin.Invest., 126, 2016
7FAS
DownloadVisualize
BU of 7fas by Molmil
VAR2CSA 3D7 ectodomain core region
Descriptor: Erythrocyte membrane protein 1, PfEMP1
Authors:Wang, L, Zhaoning, W.
Deposit date:2021-07-07
Release date:2021-11-17
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:The molecular mechanism of cytoadherence to placental or tumor cells through VAR2CSA from Plasmodium falciparum.
Cell Discov, 7, 2021
5KH9
DownloadVisualize
BU of 5kh9 by Molmil
Crystal structure of a low occupancy fragment candidate (5-[(4-Isopropylphenyl)amino]-6-methyl-1,2,4-triazin-3(2H)-one) bound in the ubiquitin binding pocket of the HDAC6 zinc-finger domain
Descriptor: 6-methyl-5-[(4-propan-2-ylphenyl)amino]-2~{H}-1,2,4-triazin-3-one, FORMIC ACID, Histone deacetylase 6, ...
Authors:Harding, R.J, Tempel, W, Ravichandran, M, Collins, P, Pearce, N, Brandao-Neto, J, Douangamath, A, Schapira, M, Bountra, C, Edwards, A.M, von Delft, F, Santhakumar, V, Arrowsmith, C.M, Structural Genomics Consortium (SGC)
Deposit date:2016-06-14
Release date:2016-07-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.07 Å)
Cite:Small Molecule Antagonists of the Interaction between the Histone Deacetylase 6 Zinc-Finger Domain and Ubiquitin.
J. Med. Chem., 60, 2017
6Q3X
DownloadVisualize
BU of 6q3x by Molmil
Structure of human galactokinase in complex with galactose and 2'-(benzo[d]oxazol-2-ylamino)-7',8'-dihydro-1'H-spiro[cyclohexane-1,4'-quinazolin]-5'(6'H)-one
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-(1,3-benzoxazol-2-ylamino)spiro[1,6,7,8-tetrahydroquinazoline-4,1'-cyclohexane]-5-one, Galactokinase, ...
Authors:Bezerra, G.A, Mackinnon, S, Zhang, M, Foster, W, Bailey, H, Arrowsmith, C, Edwards, A, Bountra, C, Lai, K, Yue, W.W, Structural Genomics Consortium (SGC)
Deposit date:2018-12-04
Release date:2020-07-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Fragment Screening Reveals Starting Points for Rational Design of Galactokinase 1 Inhibitors to Treat Classic Galactosemia.
Acs Chem.Biol., 16, 2021
5KOQ
DownloadVisualize
BU of 5koq by Molmil
Discovery of TAK-272: A Novel, Potent and Orally Active Renin In-hibitor
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-~{tert}-butyl-4-(furan-2-ylmethylamino)-~{N}-(2-methylpropyl)-~{N}-[(3~{S})-piperidin-3-yl]pyrimidine-5-carboxamide, DI(HYDROXYETHYL)ETHER, ...
Authors:Snell, G.P, Behnke, C.A, Okada, K, Hideyuki, O, Sang, B.-C, Lane, W.
Deposit date:2016-07-01
Release date:2016-11-02
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure-based design of a new series of N-(piperidin-3-yl)pyrimidine-5-carboxamides as renin inhibitors.
Bioorg.Med.Chem., 24, 2016
6WZZ
DownloadVisualize
BU of 6wzz by Molmil
GID4 in complex with VGLWKS peptide
Descriptor: Glucose-induced degradation protein 4 homolog, UNKNOWN ATOM OR ION, VGLWKS peptide
Authors:Dong, C, Tempel, W, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2020-05-14
Release date:2020-06-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Recognition of nonproline N-terminal residues by the Pro/N-degron pathway.
Proc.Natl.Acad.Sci.USA, 117, 2020
5JMM
DownloadVisualize
BU of 5jmm by Molmil
Crystal structure of hERa-LBD (Y537S) in complex with biochanin A
Descriptor: 1,2-ETHANEDIOL, 5,7-dihydroxy-3-(4-methoxyphenyl)-4H-chromen-4-one, Estrogen receptor, ...
Authors:Delfosse, V, Bourguet, W.
Deposit date:2016-04-29
Release date:2017-05-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of hERa-LBD (Y537S) in complex with biochanin A
To Be Published
6WP8
DownloadVisualize
BU of 6wp8 by Molmil
Proton-pumping mutant of Mastigocladopsis repens rhodopsin chloride pump
Descriptor: Proton-pumping rhodopsin chloride pump, RETINAL, octyl beta-D-glucopyranoside
Authors:Besaw, J.E, Ernst, O.P, Ou, W, Morizumi, T.
Deposit date:2020-04-26
Release date:2020-07-29
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The crystal structures of a chloride-pumping microbial rhodopsin and its proton-pumping mutant illuminate proton transfer determinants.
J.Biol.Chem., 295, 2020
5KOS
DownloadVisualize
BU of 5kos by Molmil
Discovery of TAK-272: A Novel, Potent and Orally Active Renin In-hibitor
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-~{tert}-butyl-4-(3-methoxypropylamino)-~{N}-(2-methylpropyl)-~{N}-[(3~{S},5~{R})-5-morpholin-4-ylcarbonylpiperidin-3-yl]pyrimidine-5-carboxamide, DI(HYDROXYETHYL)ETHER, ...
Authors:Snell, G.P, Behnke, C.A, Okada, K, Hideyuki, O, Sang, B.-C, Lane, W.
Deposit date:2016-07-01
Release date:2016-11-16
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Discovery of TAK-272: A Novel, Potent, and Orally Active Renin Inhibitor.
Acs Med.Chem.Lett., 7, 2016
5J39
DownloadVisualize
BU of 5j39 by Molmil
Crystal Structure of the extended TUDOR domain from TDRD2
Descriptor: CACODYLATE ION, Tudor and KH domain-containing protein, UNKNOWN ATOM OR ION
Authors:Zhang, H, Tempel, W, Dong, A, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2016-03-30
Release date:2016-04-13
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural basis for arginine methylation-independent recognition of PIWIL1 by TDRD2.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5JCZ
DownloadVisualize
BU of 5jcz by Molmil
Rab11 bound to MyoVa-GTD
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, BERYLLIUM TRIFLUORIDE ION, ...
Authors:Pylypenko, O, Attanda, W, Gauquelin, C, Malherbes, G, Houdusse, A.
Deposit date:2016-04-15
Release date:2016-09-28
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.056 Å)
Cite:Coordinated recruitment of Spir actin nucleators and myosin V motors to Rab11 vesicle membranes.
Elife, 5, 2016
5JJZ
DownloadVisualize
BU of 5jjz by Molmil
Chromo domain of human Chromodomain Protein, Y-Like 2
Descriptor: Chromodomain Y-like protein 2, LYS-LYS-LYS-ALA-ARG-MLY-SER-ALA-GLY-ALA-ALA-LYS-TYR
Authors:DONG, A, DOMBROVSKI, L, LOPPNAU, P, TEMPEL, W, Bountra, C, Arrowsmith, C.H, Edwards, A.M, MIN, J, WU, H, Structural Genomics Consortium (SGC)
Deposit date:2016-04-25
Release date:2016-05-25
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:The crystal structure of CDYL2 domain of human CDYL2 protein
to be published
6WZX
DownloadVisualize
BU of 6wzx by Molmil
GID4 in complex with IGLWKS peptide
Descriptor: Glucose-induced degradation protein 4 homolog, ILE-GLY-LEU-TRP-LYS peptide, UNKNOWN ATOM OR ION
Authors:Dong, C, Tempel, W, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2020-05-14
Release date:2020-06-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Recognition of nonproline N-terminal residues by the Pro/N-degron pathway.
Proc.Natl.Acad.Sci.USA, 117, 2020
5KP2
DownloadVisualize
BU of 5kp2 by Molmil
Beta-ketoacyl-ACP synthase III -2 (FabH2) (C113A) from Vibrio Cholerae cocrystallized with octanoyl-CoA: hydrolzed ligand
Descriptor: 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2, COENZYME A, OCTANOIC ACID (CAPRYLIC ACID)
Authors:Hou, J, Zheng, H, Grabowski, M, Anderson, W.F, Minor, W, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2016-07-01
Release date:2016-07-20
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:Beta-ketoacyl-ACP synthase III -2 (FabH2) (C113A) from Vibrio Cholerae soaked with octanoyl-CoA: hydrolzed ligand
To Be Published
5JAW
DownloadVisualize
BU of 5jaw by Molmil
Structure of a beta galactosidase with inhibitor
Descriptor: (1S,2S,3S,4S,5R,6R)-5-amino-6-(hydroxymethyl)cyclohexane-1,2,3,4-tetrol, ACETATE ION, Beta-galactosidase, ...
Authors:Offen, W, Davies, G.
Deposit date:2016-04-12
Release date:2017-05-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Towards broad spectrum activity-based glycosidase probes: synthesis and evaluation of deoxygenated cyclophellitol aziridines.
Chem. Commun. (Camb.), 53, 2017
6WQH
DownloadVisualize
BU of 6wqh by Molmil
Molecular basis for the ATPase-powered substrate translocation by the Lon AAA+ protease
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Ig2 substrate, Lon protease, ...
Authors:Zhang, K, Li, S, Hsiehb, K, Sub, S, Pintilie, G, Chiu, W, Chang, C.
Deposit date:2020-04-28
Release date:2021-06-09
Last modified:2021-11-17
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Molecular basis for ATPase-powered substrate translocation by the Lon AAA+ protease.
J.Biol.Chem., 297, 2021
6WIB
DownloadVisualize
BU of 6wib by Molmil
Next generation monomeric IgG4 Fc
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Immunoglobulin heavy constant gamma 4, ZINC ION
Authors:Oganesyan, V.Y, Shan, L, Dall'Acqua, W, van Dyk, N.
Deposit date:2020-04-09
Release date:2021-09-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:In vivo pharmacokinetic enhancement of monomeric Fc and monovalent bispecific designs through structural guidance.
Commun Biol, 4, 2021
5KOT
DownloadVisualize
BU of 5kot by Molmil
Discovery of TAK-272: A Novel, Potent and Orally Active Renin In-hibitor
Descriptor: 1-(4-methoxybutyl)-~{N}-(2-methylpropyl)-~{N}-[(3~{S},5~{R})-5-morpholin-4-ylcarbonylpiperidin-3-yl]benzimidazole-2-carboxamide, 2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, ...
Authors:Snell, G.P, Behnke, C.A, Okada, K, Hideyuki, O, Sang, B.-C, Lane, W.
Deposit date:2016-07-01
Release date:2017-07-05
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Discovery of TAK-272: A Novel, Potent and Orally Active Renin Inhibitor
To be published

222624

數據於2024-07-17公開中

PDB statisticsPDBj update infoContact PDBjnumon