Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 12479 件

5ZC9
DownloadVisualize
BU of 5zc9 by Molmil
Crystal structure of the human eIF4A1-ATP analog-RocA-polypurine RNA complex
分子名称: (1R,2R,3S,3aR,8bS)-6,8-dimethoxy-3a-(4-methoxyphenyl)-N,N-dimethyl-1,8b-bis(oxidanyl)-3-phenyl-2,3-dihydro-1H-cyclopenta[b][1]benzofuran-2-carboxamide, Eukaryotic initiation factor 4A-I, MAGNESIUM ION, ...
著者Iwasaki, W, Takahashi, M, Sakamoto, A, Iwasaki, S, Ito, T.
登録日2018-02-16
公開日2019-01-16
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The Translation Inhibitor Rocaglamide Targets a Bimolecular Cavity between eIF4A and Polypurine RNA.
Mol. Cell, 73, 2019
5Z1Q
DownloadVisualize
BU of 5z1q by Molmil
Crystal structures of the trimeric N-terminal domain of Ciliate Euplotes octocarinatus Centrin
分子名称: CALCIUM ION, CHLORIDE ION, Centrin protein
著者Wang, W, Zhao, Y, Yang, B, Wang, H.
登録日2017-12-27
公開日2018-04-25
最終更新日2018-06-20
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of the trimeric N-terminal domain of ciliate Euplotes octocarinatus centrin binding with calcium ions
Protein Sci., 27, 2018
5Z9Y
DownloadVisualize
BU of 5z9y by Molmil
Crystal structure of Mycobacterium tuberculosis thiazole synthase (ThiG) complexed with DXP
分子名称: 1-DEOXY-D-XYLULOSE-5-PHOSPHATE, Thiazole synthase
著者Zhang, J, Zhang, B, Zhao, Y, Yang, X, Huang, M, Cui, P, Zhang, W, Li, J, Zhang, Y.
登録日2018-02-05
公開日2018-04-11
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Snapshots of catalysis: Structure of covalently bound substrate trapped in Mycobacterium tuberculosis thiazole synthase (ThiG).
Biochem. Biophys. Res. Commun., 497, 2018
5Z6B
DownloadVisualize
BU of 5z6b by Molmil
Crystal structure of sugar-binding protein YesO in complex with rhamnogalacturonan trisaccharide
分子名称: 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-2)-[beta-D-galactopyranose-(1-4)]alpha-L-rhamnopyranose, Putative ABC transporter substrate-binding protein YesO
著者Sugiura, H, Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
登録日2018-01-22
公開日2019-01-23
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.582 Å)
主引用文献Crystal structure of sugar-binding protein YesO in complex with rhamnogalacturonan trisaccharide
To Be Published
5ZHK
DownloadVisualize
BU of 5zhk by Molmil
Crystal structure of TrmD from Mycobacterium tuberculosis in complex with active-site inhibitor
分子名称: N-[(4-{[cyclohexyl(ethyl)amino]methyl}phenyl)methyl]-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidine-5-carboxamide, tRNA (guanine-N(1)-)-methyltransferase
著者Zhong, W, Pasunooti, K.K, Balamkundu, S, Wong, Y.W, Nah, Q, Liu, C.F, Lescar, J, Dedon, P.C.
登録日2018-03-13
公開日2019-03-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Thienopyrimidinone Derivatives That Inhibit Bacterial tRNA (Guanine37-N1)-Methyltransferase (TrmD) by Restructuring the Active Site with a Tyrosine-Flipping Mechanism.
J.Med.Chem., 62, 2019
5WRG
DownloadVisualize
BU of 5wrg by Molmil
SARS-CoV spike glycoprotein
分子名称: Spike glycoprotein
著者Gui, M, Song, W, Xiang, Y, Wang, X.
登録日2016-12-01
公開日2017-01-11
最終更新日2019-11-06
実験手法ELECTRON MICROSCOPY (4.3 Å)
主引用文献Cryo-electron microscopy structures of the SARS-CoV spike glycoprotein reveal a prerequisite conformational state for receptor binding.
Cell Res., 27, 2017
5WSA
DownloadVisualize
BU of 5wsa by Molmil
Pyruvate kinase (PYK) from Mycobacterium tuberculosis in complex with Oxalate and allosteric activator Glucose 6-Phosphate
分子名称: 6-O-phosphono-alpha-D-glucopyranose, MAGNESIUM ION, OXALATE ION, ...
著者Zhong, W, Cai, Q, El Sahili, A, Lescar, J, Dedon, P.C.
登録日2016-12-06
公開日2017-11-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Allosteric pyruvate kinase-based "logic gate" synergistically senses energy and sugar levels in Mycobacterium tuberculosis.
Nat Commun, 8, 2017
5WPX
DownloadVisualize
BU of 5wpx by Molmil
Solution Structure of KstB-PCP loaded with nicotinic acid in kosinostatin biosynthesis
分子名称: Peptidyl carrier protein, ~{S}-[2-[3-[[(2~{S})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] pyridine-3-carbothioate
著者Zhao, B, Lan, W, Tang, G, Cao, C.
登録日2016-11-21
公開日2018-02-07
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Solution Structure of KstB-PCP loaded with nicotinic acid in kosinostatin biosynthesis
To Be Published
5WHS
DownloadVisualize
BU of 5whs by Molmil
Crystal structure of the catalase-peroxidase from Neurospora crassa at 2.6 A
分子名称: Catalase-peroxidase, PROTOPORPHYRIN IX CONTAINING FE
著者Diaz-Vilchis, A, Vega-Garcia, V, Rudino-Pinera, E, Hansberg, W.
登録日2017-07-18
公開日2018-01-17
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structure, kinetics, molecular and redox properties of a cytosolic and developmentally regulated fungal catalase-peroxidase.
Arch. Biochem. Biophys., 640, 2018
5W1E
DownloadVisualize
BU of 5w1e by Molmil
PobR in complex with PHB
分子名称: GLYCEROL, P-HYDROXYBENZOIC ACID, Putative transcriptional regulator, ...
著者Page, R, Peti, W, Lord, D.M, Bajaj, R, Zhang, R.
登録日2017-06-02
公開日2017-12-13
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.06 Å)
主引用文献A peculiar IclR family transcription factor regulates para-hydroxybenzoate catabolism in Streptomyces coelicolor.
Nucleic Acids Res., 46, 2018
5W1J
DownloadVisualize
BU of 5w1j by Molmil
Echinococcus granulosus thioredoxin glutathione reductas (egTGR)
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, Thioredoxin glutathione reductase
著者Gao, W, Wang, Y, Dai, S.
登録日2017-06-03
公開日2017-11-22
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献The Enzymatic and Structural Basis for Inhibition of Echinococcus granulosus Thioredoxin Glutathione Reductase by Gold(I).
Antioxid. Redox Signal., 27, 2017
5VNJ
DownloadVisualize
BU of 5vnj by Molmil
Crystal structure of Sec23a/Sec24a/Sec22 complexed with a C-terminal FF sorting motif (ERGIC-53)
分子名称: C-terminal FF Ergic-53, Protein transport protein Sec23A, Protein transport protein Sec24A, ...
著者Ma, W, Goldberg, J.
登録日2017-04-30
公開日2017-07-05
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.806 Å)
主引用文献ER retention is imposed by COPII protein sorting and attenuated by 4-phenylbutyrate.
Elife, 6, 2017
7FDZ
DownloadVisualize
BU of 7fdz by Molmil
Levansucrase from Brenneria sp. EniD 312 with sucrose
分子名称: 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
著者Xu, W, Hou, X.D, Rao, Y.J, Pijning, T, Guskov, A, Mu, W.M.
登録日2021-07-19
公開日2022-04-20
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Crystal Structure of Levansucrase from the Gram-Negative Bacterium Brenneria Provides Insights into Its Product Size Specificity.
J.Agric.Food Chem., 70, 2022
5ZO1
DownloadVisualize
BU of 5zo1 by Molmil
Crystal structure of mouse nectin-like molecule 4 (mNecl-4) full ectodomain (Ig1-Ig3), 2.2A
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Cell adhesion molecule 4, GLYCEROL
著者Liu, X, An, T, Li, D, Fan, Z, Xiang, P, Li, C, Ju, W, Li, J, Hu, G, Qin, B, Yin, B, Wojdyla, J.A, Wang, M, Yuan, J, Qiang, B, Shu, P, Cui, S, Peng, X.
登録日2018-04-12
公開日2019-01-30
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.201 Å)
主引用文献Structure of the heterophilic interaction between the nectin-like 4 and nectin-like 1 molecules.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
7F3B
DownloadVisualize
BU of 7f3b by Molmil
cocrystallization of Escherichia coli dihydrofolate reductase (DHFR) and its pyrrolo[3,2-f]quinazoline inhibitor.
分子名称: 7-[(2-fluorophenyl)methyl]pyrrolo[3,2-f]quinazoline-1,3-diamine, Dihydrofolate reductase, GLYCEROL
著者Wang, H, You, X.F, Yang, X.Y, Li, Y, Hong, W.
登録日2021-06-16
公開日2022-04-27
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.81 Å)
主引用文献The discovery of 1, 3-diamino-7H-pyrrol[3, 2-f]quinazoline compounds as potent antimicrobial antifolates.
Eur.J.Med.Chem., 228, 2022
5ZBR
DownloadVisualize
BU of 5zbr by Molmil
Crystal Structure of Kinesin-3 KIF13B motor domain in AMPPNP form
分子名称: Kinesin family member 13B, MAGNESIUM ION, PHOSPHATE ION, ...
著者Ren, J.Q, Wang, S, Feng, W.
登録日2018-02-12
公開日2018-05-30
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural Delineation of the Neck Linker of Kinesin-3 for Processive Movement.
J. Mol. Biol., 430, 2018
5WBV
DownloadVisualize
BU of 5wbv by Molmil
Crystal Structure of the SET Domain of Human SUV420H1 In Complex With Inhibitor
分子名称: 2-chloro-5-(4-methyl-6-oxo-3-phenylpyrano[2,3-c]pyrazol-1(6H)-yl)benzoic acid, Histone-lysine N-methyltransferase KMT5B, S-ADENOSYLMETHIONINE, ...
著者Halabelian, L, Tempel, W, Brown, P.J, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Structural Genomics Consortium (SGC)
登録日2017-06-29
公開日2017-07-19
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal Structure of the SET Domain of Human SUV420H1 In Complex With Inhibitor
To be published
7CKF
DownloadVisualize
BU of 7ckf by Molmil
The N-terminus of interferon-inducible antiviral protein-dimer
分子名称: ALUMINUM FLUORIDE, GUANOSINE-5'-DIPHOSPHATE, Guanylate-binding protein 5, ...
著者Cui, W, Yang, H.T.
登録日2020-07-16
公開日2021-05-05
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.284 Å)
主引用文献Structural basis for GTP-induced dimerization and antiviral function of guanylate-binding proteins.
Proc.Natl.Acad.Sci.USA, 118, 2021
5WHQ
DownloadVisualize
BU of 5whq by Molmil
Crystal structure of the catalase-peroxidase from Neurospora crassa at 2.9 A
分子名称: Catalase-peroxidase, POTASSIUM ION, PROTOPORPHYRIN IX CONTAINING FE
著者Diaz-Vilchis, A, Vega-Garcia, V, Rudino-Pinera, E, Hansberg, W.
登録日2017-07-18
公開日2018-01-17
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structure, kinetics, molecular and redox properties of a cytosolic and developmentally regulated fungal catalase-peroxidase.
Arch. Biochem. Biophys., 640, 2018
5W96
DownloadVisualize
BU of 5w96 by Molmil
Solution structure of phage derived peptide inhibitor of frizzled 7 receptor
分子名称: Fz7 binding peptide
著者Nile, A.H, de Sousa e Melo, F, Mukund, S, Piskol, R, Hansen, S, Zhou, L, Zhang, Y, Fu, Y, Gogol, E.B, Komuves, L.G, Modrusan, Z, Angers, S, Franke, Y, Koth, C, Fairbrother, W.J, Wang, W, de Sauvage, F.J, Hannoush, R.N.
登録日2017-06-22
公開日2018-04-18
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献A selective peptide inhibitor of Frizzled 7 receptors disrupts intestinal stem cells.
Nat. Chem. Biol., 14, 2018
5WPY
DownloadVisualize
BU of 5wpy by Molmil
Solution Structure of KstB-PCP loaded with nicotinic acid in kosinostatin biosynthesis
分子名称: N~3~-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-N-(2-sulfanylethyl)-beta-alaninamide, Peptidyl carrier protein
著者Zhao, B, Lan, W, Tang, G, Cao, C.
登録日2016-11-21
公開日2017-11-29
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献major solution Structure of KstB-PCP in kosinostatin biosynthesis
To Be Published
5W0S
DownloadVisualize
BU of 5w0s by Molmil
GroEL using cryoEM
分子名称: 60 kDa chaperonin
著者Roh, S.H, Chiu, W.
登録日2017-05-31
公開日2017-08-09
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Subunit conformational variation within individual GroEL oligomers resolved by Cryo-EM.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5W5G
DownloadVisualize
BU of 5w5g by Molmil
Structure of Human Sts-1 histidine phosphatase domain
分子名称: Ubiquitin-associated and SH3 domain-containing protein B
著者Zhou, W, Yin, Y, Weinheimer, A.W, Kaur, N, Carpino, N, French, J.B.
登録日2017-06-15
公開日2017-08-16
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.48 Å)
主引用文献Structural and Functional Characterization of the Histidine Phosphatase Domains of Human Sts-1 and Sts-2.
Biochemistry, 56, 2017
7EXC
DownloadVisualize
BU of 7exc by Molmil
Crystal structure of T2R-TTL-1129A2 complex
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, GLYCEROL, ...
著者Yang, J.H, Yan, W.
登録日2021-05-26
公開日2022-06-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.39 Å)
主引用文献Structure-Based Design and Synthesis of N-Substituted 3-Amino-beta-Carboline Derivatives as Potent alpha beta-Tubulin Degradation Agents
J.Med.Chem., 65, 2022
5VZX
DownloadVisualize
BU of 5vzx by Molmil
Crystal structure of crenezumab Fab
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Crenezumab Fab heavy chain, ...
著者Ultsch, M, Wang, W.
登録日2017-05-29
公開日2017-08-09
実験手法X-RAY DIFFRACTION (2.501 Å)
主引用文献Structure of Crenezumab Complex with Abeta Shows Loss of beta-Hairpin.
Sci Rep, 6, 2016

222415

件を2024-07-10に公開中

PDB statisticsPDBj update infoContact PDBjnumon