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PDB: 35 results

4UUG
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BU of 4uug by Molmil
The (R)-selective amine transaminase from Aspergillus fumigatus with inhibitor bound
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, 3-[O-PHOSPHONOPYRIDOXYL]--AMINO-BENZOIC ACID, ...
Authors:Thomsen, M, Hinrichs, W.
Deposit date:2014-07-28
Release date:2014-11-26
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural and Biochemical Characterization of the Dual Substrate Recognition of the (R)-Selective Amine Transaminase from Aspergillus Fumigatus
FEBS J., 282, 2015
8R7C
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MutSbeta bound to compound CHDI-00915542 in the canonical DNA-mismatch bound form
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, DNA (5'-D(*CP*CP*AP*TP*CP*GP*AP*TP*CP*GP*CP*AP*GP*CP*TP*TP*CP*AP*GP*AP*TP*AP*G)-3'), ...
Authors:Thomsen, M, Thieulin-Pardo, G, Steinbacher, S, Brace, G, Tillack, K, Johnson, P, Ritzefeld, M, Schaertl, S, Frush, E, Warfield, B, Ballantyne, G, Lee, J.-H, Witte, D, Finley, M, Prasad, B, Monteagudo, E, Plotnikov, N, Pacifici, R, Maillard, M, Wilkinson, H, Iyer, R, Dominguez, C, Vogt, T, Felsenfeld, D, Haque, T.
Deposit date:2023-11-24
Release date:2024-11-27
Method:X-RAY DIFFRACTION (2.82 Å)
Cite:Identification of orthosteric inhibitors of MutSbeta ATPase function
Chemrxiv, 2024
8R7E
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MutSbeta bound to compound CHDI-00898647 in the canonical DNA-mismatch bound form
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, Abivertinib, ...
Authors:Thomsen, M, Thieulin-Pardo, G, Steinbacher, S, Brace, G, Tillack, K, Johnson, P, Ritzefeld, M, Schaertl, S, Frush, E, Warfield, B, Ballantyne, G, Lee, J.-H, Witte, D, Finley, M, Prasad, B, Monteagudo, E, Plotnikov, N, Pacifici, R, Maillard, M, Wilkinson, H, Iyer, R, Dominguez, C, Vogt, T, Felsenfeld, D, Haque, T.
Deposit date:2023-11-24
Release date:2024-11-27
Method:X-RAY DIFFRACTION (2.783 Å)
Cite:Identification of orthosteric inhibitors of MutSbeta ATPase function
Chemrxiv, 2024
4CHI
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BU of 4chi by Molmil
(R)-selective amine transaminase from Aspergillus fumigatus at 1.27 A resolution
Descriptor: BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE, CHLORIDE ION, GLYCEROL, ...
Authors:Thomsen, M, Palm, G.J, Hinrichs, W.
Deposit date:2013-12-02
Release date:2014-04-30
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:Crystallographic Characterization of the (R)-Selective Amine Transaminase from Aspergillus Fumigatus.
Acta Crystallogr.,Sect.D, 70, 2014
4D4F
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BU of 4d4f by Molmil
Mutant P250A of bacterial chalcone isomerase from Eubacterium ramulus
Descriptor: CHALCONE ISOMERASE, CHLORIDE ION, GLYCEROL
Authors:Thomsen, M, Kratzat, H, Hinrichs, W.
Deposit date:2014-10-28
Release date:2016-01-20
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Structural Basis for (2 R ,3 R )-Taxifolin Binding and Reaction Products to the Bacterial Chalcone Isomerase of Eubacterium ramulus.
Molecules, 27, 2022
8P4H
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BU of 8p4h by Molmil
Crystal structure of human methionine adenosyltransferase 2A (MAT2A) in complex with SAM and allosteric compound IDEAYA cmpd A
Descriptor: 7-chloranyl-4-[(3R)-3-fluoranylpyrrolidin-1-yl]-1-phenyl-quinazolin-2-one, CHLORIDE ION, GLYCEROL, ...
Authors:Thomsen, M, Thieulin-Pardo, G, Neumann, L.
Deposit date:2023-05-21
Release date:2023-08-30
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Discovery of novel methionine adenosyltransferase 2A (MAT2A) allosteric inhibitors by structure-based virtual screening.
Bioorg.Med.Chem.Lett., 94, 2023
8P1T
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Crystal structure of human methionine adenosyltransferase 2A (MAT2A) in complex with SAM and allosteric inhibitor Z237451470
Descriptor: 1,2-ETHANEDIOL, 6-cyclopropyl-~{N}-(1~{H}-indazol-5-yl)-1-propan-2-yl-pyrazolo[3,4-b]pyridine-4-carboxamide, CHLORIDE ION, ...
Authors:Thomsen, M, Thieulin-Pardo, G, Neumann, L.
Deposit date:2023-05-12
Release date:2023-08-30
Method:X-RAY DIFFRACTION (1.442 Å)
Cite:Discovery of novel methionine adenosyltransferase 2A (MAT2A) allosteric inhibitors by structure-based virtual screening.
Bioorg.Med.Chem.Lett., 94, 2023
8P1W
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Crystal structure of human methionine adenosyltransferase 2A (MAT2A) in complex with allosteric compound STL232591
Descriptor: 1,2-ETHANEDIOL, 5'-DEOXY-5'-METHYLTHIOADENOSINE, 8-methoxy-1-(4-methoxyphenyl)-3-methyl-2-oxidanyl-[1]benzofuro[3,2-c]pyridine, ...
Authors:Thomsen, M, Thieulin-Pardo, G, Neumann, L.
Deposit date:2023-05-12
Release date:2023-08-30
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Discovery of novel methionine adenosyltransferase 2A (MAT2A) allosteric inhibitors by structure-based virtual screening.
Bioorg.Med.Chem.Lett., 94, 2023
8P1V
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BU of 8p1v by Molmil
Crystal structure of human methionine adenosyltransferase 2A (MAT2A) in complex with SAM and allosteric compound 2
Descriptor: 1,2-ETHANEDIOL, 6-cyclopropyl-~{N}-(2-methylindazol-5-yl)-1-propan-2-yl-pyrazolo[3,4-b]pyridine-4-carboxamide, CHLORIDE ION, ...
Authors:Thomsen, M, Thieulin-Pardo, G, Neumann, L.
Deposit date:2023-05-12
Release date:2023-08-30
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Discovery of novel methionine adenosyltransferase 2A (MAT2A) allosteric inhibitors by structure-based virtual screening.
Bioorg.Med.Chem.Lett., 94, 2023
4C9S
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BU of 4c9s by Molmil
BACTERIAL CHALCONE ISOMERASE IN open CONFORMATION FROM EUBACTERIUM RAMULUS AT 1.8 A RESOLUTION
Descriptor: CHALCONE ISOMERASE, CHLORIDE ION, GLYCEROL, ...
Authors:Thomsen, M, Palm, G.J, Hinrichs, W.
Deposit date:2013-10-03
Release date:2014-10-22
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure and Catalytic Mechanism of the Evolutionarily Unique Bacterial Chalcone Isomerase
Acta Crystallogr.,Sect.D, 71, 2015
4C9T
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BU of 4c9t by Molmil
BACTERIAL CHALCONE ISOMERASE IN open CONFORMATION FROM EUBACTERIUM RAMULUS AT 2.0 A RESOLUTION, SelenoMet derivative
Descriptor: CHALCONE ISOMERASE, CHLORIDE ION, GLYCEROL, ...
Authors:Thomsen, M, Palm, G.J, Hinrichs, W.
Deposit date:2013-10-03
Release date:2014-10-22
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structure and Catalytic Mechanism of the Evolutionarily Unique Bacterial Chalcone Isomerase
Acta Crystallogr.,Sect.D, 71, 2015
3ZPH
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BU of 3zph by Molmil
Bacterial chalcone isomerase in closed conformation from Eubacterium ramulus at 2.8 A resolution
Descriptor: CHALCONE ISOMERASE, CHLORIDE ION, GLYCEROL
Authors:Thomsen, M, Palm, G.J, Hinrichs, W.
Deposit date:2013-02-27
Release date:2014-01-15
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Enzymatic conversion of flavonoids using bacterial chalcone isomerase and enoate reductase.
Angew.Chem.Int.Ed.Engl., 53, 2014
5LNL
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BU of 5lnl by Molmil
Crystal structure of Hsf 1608-1749 putative domain 1
Descriptor: Hsf
Authors:Thomsen, M, Wright, J, Ridley, J, Goldman, A.
Deposit date:2016-08-05
Release date:2017-02-15
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:The crystal structure of PD1, a Haemophilus surface fibril domain.
Acta Crystallogr F Struct Biol Commun, 73, 2017
4D06
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BU of 4d06 by Molmil
Bacterial chalcone isomerase complexed with naringenin
Descriptor: (2E)-3-(4-hydroxyphenyl)-1-(2,4,6-trihydroxyphenyl)prop-2-en-1-one, CHALCONE ISOMERASE, CHLORIDE ION, ...
Authors:Thomsen, M, Palm, G.J, Hinrichs, W.
Deposit date:2014-04-24
Release date:2015-04-08
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and Catalytic Mechanism of the Evolutionarily Unique Bacterial Chalcone Isomerase
Acta Crystallogr.,Sect.D, 71, 2015
9GY0
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BU of 9gy0 by Molmil
Cryo_EM structure of human FAN1 R507H mutant in complex with 5' flap DNA substrate and PCNA
Descriptor: CALCIUM ION, DNA (Continuous), DNA (Post-Nick), ...
Authors:Jeyasankar, G, Salerno-Kochan, A, Thomsen, M.
Deposit date:2024-10-01
Release date:2025-01-29
Method:ELECTRON MICROSCOPY (3.42 Å)
Cite:A FAN1 point mutation associated with accelerated Huntington's disease progression alters its PCNA-mediated assembly on DNA
Biorxiv, 2024
9EO1
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BU of 9eo1 by Molmil
Cryo_EM structure of human FAN1 in complex with 5' flap DNA substrate
Descriptor: DNA (continuous), DNA (post-nick), DNA (pre-nick), ...
Authors:Jeyasankar, G, Salerno-Kochan, A, Thomsen, M.
Deposit date:2024-03-14
Release date:2025-01-29
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:A FAN1 point mutation associated with accelerated Huntington's disease progression alters its PCNA-mediated assembly on DNA
Biorxiv, 2024
9EOA
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BU of 9eoa by Molmil
Cryo_EM structure of human FAN1 in complex with 5' flap DNA substrate and PCNA
Descriptor: DNA (continuous), DNA (post-nick), DNA (pre-nick), ...
Authors:Jeyasankar, G, Salerno-Kochan, A, Thomsen, M.
Deposit date:2024-03-14
Release date:2025-01-29
Method:ELECTRON MICROSCOPY (3.27 Å)
Cite:A FAN1 point mutation associated with accelerated Huntington's disease progression alters its PCNA-mediated assembly on DNA
Biorxiv, 2024
7OXL
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BU of 7oxl by Molmil
Crystal structure of human Spermine Oxidase
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, FAD-MDL72527 adduct, ...
Authors:Impagliazzo, A, Johannsson, S, Thomsen, M, Krapp, S.
Deposit date:2021-06-22
Release date:2022-07-13
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of human spermine oxidase in complex with a highly selective allosteric inhibitor.
Commun Biol, 5, 2022
7OY0
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BU of 7oy0 by Molmil
Structure of human Spermine Oxidase in complex with a highly selective allosteric inhibitor
Descriptor: 4-[(4-imidazo[1,2-a]pyridin-3-yl-1,3-thiazol-2-yl)amino]phenol, CHLORIDE ION, FAD-MDL72527 adduct, ...
Authors:Impagliazzo, A, Thomsen, M, Johannsson, S, Krapp, S.
Deposit date:2021-06-23
Release date:2022-07-13
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Structure of human spermine oxidase in complex with a highly selective allosteric inhibitor.
Commun Biol, 5, 2022
8CPD
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BU of 8cpd by Molmil
Cryo-EM structure of CRaf dimer with 14:3:3
Descriptor: 14-3-3 protein zeta isoform X1, RAF proto-oncogene serine/threonine-protein kinase
Authors:Dedden, D, Graedler, U, Schwarz, D, Thomsen, M, Leuthner, B, Schneider, E, Nitsche, J.
Deposit date:2023-03-02
Release date:2024-02-21
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (3.46 Å)
Cite:Cryo-EM Structures of CRAF 2 /14-3-3 2 and CRAF 2 /14-3-3 2 /MEK1 2 Complexes.
J.Mol.Biol., 436, 2024
8CHA
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BU of 8cha by Molmil
Fc gamma RIIa 27W/131H variant ectodomain
Descriptor: 1,2-DIMETHOXYETHANE, 2-[2-(2-ethoxyethoxy)ethoxy]ethanol, 3,6,9,12,15,18-HEXAOXAICOSANE, ...
Authors:Foy, E.G, Thomsen, M, Goldman, A, Robinson, J.I.
Deposit date:2023-02-07
Release date:2024-05-22
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Fc gamma RIIa 27W/131H variant ectodomain
To Be Published
8S5A
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BU of 8s5a by Molmil
The crystal structure of FAN1 Nuclease bound to 5' phosphorylated p(dG)/3'(dT-dT-dT-dT) double flap DNA
Descriptor: CALCIUM ION, CHLORIDE ION, DNA (5'-D(*AP*AP*CP*AP*CP*GP*CP*CP*TP*AP*GP*AP*CP*TP*CP*CP*TP*CP*A)-3'), ...
Authors:Costanzi, E, Thomsen, M.
Deposit date:2024-02-23
Release date:2025-03-05
Method:X-RAY DIFFRACTION (2.645 Å)
Cite:The crystal structure of FAN1 Nuclease bound to 5' phosphorylated p(dG)/3'(dT-dT-dT-dT) double flap DNA
To Be Published
8RZ9
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BU of 8rz9 by Molmil
MutSbeta-ATPgS with kinked MSH2 clamp
Descriptor: DNA mismatch repair protein Msh2, DNA mismatch repair protein Msh3, MAGNESIUM ION, ...
Authors:Lee, J.-H, Thomsen, M, Daub, H, Steinbacher, S, Sztyler, A, Thieulin-Pardo, G, Neudegger, T, Plotnikov, N, Iyer, R.R, Wilkinson, H, Monteagudo, E, Felsenfeld, D.P, Haque, T, Finley, M, Dominguez, C, Vogt, T.F, Prasad, B.C.
Deposit date:2024-02-12
Release date:2024-11-13
Method:ELECTRON MICROSCOPY (3.02 Å)
Cite:MutSbeta-ATPgS complex with kinked MSH2 clamp
To Be Published
8RZ8
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BU of 8rz8 by Molmil
MutSbeta-ATPgS with straight MSH2 clamp
Descriptor: DNA mismatch repair protein Msh2, DNA mismatch repair protein Msh3, MAGNESIUM ION, ...
Authors:Lee, J.-H, Thomsen, M, Daub, H, Steinbacher, S, Sztyler, A, Thieulin-Pardo, G, Neudegger, T, Plotnikov, N, Iyer, R.R, Wilkinson, H, Monteagudo, E, Felsenfeld, D.P, Haque, T, Finley, M, Dominguez, C, Vogt, T.F, Prasad, B.C.
Deposit date:2024-02-12
Release date:2024-11-13
Method:ELECTRON MICROSCOPY (3.06 Å)
Cite:MutSbeta-ATPgS complex with straight MSH2 clamp
To Be Published
8RZ7
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(CAG)2 DNA-bound MutSbeta in open form with kinked MSH2 clamp
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA mismatch repair protein Msh2, DNA mismatch repair protein Msh3, ...
Authors:Lee, J.-H, Thomsen, M, Daub, H, Steinbacher, S, Sztyler, A, Thieulin-Pardo, G, Neudegger, T, Plotnikov, N, Iyer, R.R, Wilkinson, H, Monteagudo, E, Felsenfeld, D.P, Haque, T, Finley, M, Dominguez, C, Vogt, T.F, Prasad, B.C.
Deposit date:2024-02-12
Release date:2024-11-13
Method:ELECTRON MICROSCOPY (3.37 Å)
Cite:(CAG)2 DNA-bound MutSbeta in open form with kinked MSH2 clamp
To Be Published

 

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