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PDB: 363 results

8RG2
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Structure of BlaC from Mycobacterium tuberculosis at pH 8
Descriptor: Beta-lactamase, GLYCEROL
Authors:Sun, J, Bruenle, S, Ubbink, M.
Deposit date:2023-12-13
Release date:2024-08-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A low-barrier proton shared between two aspartates acts as a conformational switch that changes the substrate specificity of the beta-lactamase BlaC.
Int.J.Biol.Macromol., 278, 2024
8RII
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BU of 8rii by Molmil
Structure of E166A BlaC from Mycobacterium tuberculosis at pH 6.5
Descriptor: Beta-lactamase
Authors:Sun, J, Bruenle, S, Ubbink, M.
Deposit date:2023-12-18
Release date:2024-08-28
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A low-barrier proton shared between two aspartates acts as a conformational switch that changes the substrate specificity of the beta-lactamase BlaC.
Int.J.Biol.Macromol., 278, 2024
8RFZ
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BU of 8rfz by Molmil
Structure of E166A BlaC from Mycobacterium tuberculosis at pH 4.5
Descriptor: Beta-lactamase, SULFATE ION
Authors:Sun, J, Bruenle, S, Ubbink, M.
Deposit date:2023-12-13
Release date:2024-08-28
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:A low-barrier proton shared between two aspartates acts as a conformational switch that changes the substrate specificity of the beta-lactamase BlaC.
Int.J.Biol.Macromol., 278, 2024
6KRG
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BU of 6krg by Molmil
Crystal structure of sfGFP Y182TMSiPhe
Descriptor: CHLORIDE ION, GLYCEROL, Green fluorescent protein, ...
Authors:Sun, J.P, Wang, J.Y, Zhu, Z.L, He, Q.T, Xiao, P.
Deposit date:2019-08-21
Release date:2020-09-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:DeSiphering receptor core-induced and ligand-dependent conformational changes in arrestin via genetic encoded trimethylsilyl 1 H-NMR probe.
Nat Commun, 11, 2020
7RKI
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BU of 7rki by Molmil
Griffithsin-S10Y/S42Y/S88Y
Descriptor: Griffithsin, alpha-D-mannopyranose
Authors:Sun, J.D, Zhao, G.X.
Deposit date:2021-07-22
Release date:2022-05-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:C 3 -Symmetric Aromatic Core of Griffithsin Is Essential for Potent Anti-HIV Activity.
Acs Chem.Biol., 17, 2022
8SMC
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BU of 8smc by Molmil
Cryo-EM structure of LRRK2 bound with type-I inhibitor DNL201
Descriptor: 2-methyl-2-(3-methyl-4-{[4-(methylamino)-5-(trifluoromethyl)pyrimidin-2-yl]amino}-1H-pyrazol-1-yl)propanenitrile, GUANOSINE-5'-DIPHOSPHATE, non-specific serine/threonine protein kinase
Authors:Sun, J, Zhu, H.
Deposit date:2023-04-26
Release date:2024-01-03
Method:ELECTRON MICROSCOPY (4.02 Å)
Cite:Rab29-dependent asymmetrical activation of leucine-rich repeat kinase 2.
Science, 382, 2023
3KF6
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BU of 3kf6 by Molmil
Crystal structure of S. pombe Stn1-ten1 complex
Descriptor: Protein stn1, Protein ten1
Authors:Sun, J, Yu, E.Y, Yang, Y.T, Confer, L.A, Sun, S.H, Wan, K, Lue, N.F, Lei, M.
Deposit date:2009-10-27
Release date:2009-12-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Stn1-Ten1 is an Rpa2-Rpa3-like complex at telomeres.
Genes Dev., 23, 2009
3KEY
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BU of 3key by Molmil
Crystal structure of S. cerevisiae Stn1 C-terminal
Descriptor: Protein STN1
Authors:Sun, J, Yu, E.Y, Yang, Y.T, Confer, L.A, Sun, S.H, Wan, K, Lue, N.F, Lei, M.
Deposit date:2009-10-26
Release date:2009-12-22
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Stn1-Ten1 is an Rpa2-Rpa3-like complex at telomeres.
Genes Dev., 23, 2009
3KF8
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BU of 3kf8 by Molmil
Crystal structure of C. tropicalis Stn1-ten1 complex
Descriptor: Protein stn1, Protein ten1
Authors:Sun, J, Yu, E.Y, Yang, Y.T, Confer, L.A, Sun, S.H, Wan, K, Lue, N.F, Lei, M.
Deposit date:2009-10-27
Release date:2009-12-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Stn1-Ten1 is an Rpa2-Rpa3-like complex at telomeres.
Genes Dev., 23, 2009
5DUM
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BU of 5dum by Molmil
Crystal structure of influenza A virus H5 hemagglutinin globular head in complex with the Fab of antibody 65C6
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 65C6 Heavy Chain, 65C6 Light Chain, ...
Authors:Sun, J, Zuo, T, Wang, G, Zhou, P, Zhang, L, Wang, X.
Deposit date:2015-09-19
Release date:2015-12-16
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.003 Å)
Cite:Comprehensive analysis of antibody recognition in convalescent humans from highly pathogenic avian influenza H5N1 infection
Nat Commun, 6, 2015
6WXR
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BU of 6wxr by Molmil
CryoEM structure of mouse DUOX1-DUOXA1 complex in the absence of NADPH
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Dual oxidase 1, Dual oxidase maturation factor 1, ...
Authors:Sun, J.
Deposit date:2020-05-11
Release date:2020-09-02
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structures of mouse DUOX1-DUOXA1 provide mechanistic insights into enzyme activation and regulation.
Nat.Struct.Mol.Biol., 27, 2020
9JHJ
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BU of 9jhj by Molmil
Cryo-EM structure of the C18:0 ceramide-bound FPR2-Gi complex
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(i) subunit alpha-1, ...
Authors:Sun, J.P, Jiang, C.T, Kong, W, Yu, X, Cai, K, Guo, L.L.
Deposit date:2024-09-09
Release date:2025-03-19
Last modified:2025-03-26
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Metabolic signaling of ceramides through the FPR2 receptor inhibits adipocyte thermogenesis.
Science, 2025
8JBJ
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BU of 8jbj by Molmil
Crystal structure of anti-PVRIG Fab
Descriptor: antibody heavy chain, antibody light chain
Authors:Sun, J, Li, X.L, Song, J.
Deposit date:2023-05-09
Release date:2023-06-21
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Identification and characterization of an unexpected isomerization motif in CDRH2 that affects antibody activity.
Mabs, 15, 2023
8W8Q
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BU of 8w8q by Molmil
Cryo-EM structure of the GPR101-Gs complex
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ...
Authors:Sun, J.P, Gao, N, Yu, X, Wang, G.P, Yang, F, Wang, J.Y, Yang, Z, Guan, Y.
Deposit date:2023-09-04
Release date:2024-01-03
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (2.89 Å)
Cite:Structure of GPR101-Gs enables identification of ligands with rejuvenating potential.
Nat.Chem.Biol., 20, 2024
8W8S
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BU of 8w8s by Molmil
Cryo-EM structure of the AA14-bound GPR101 complex
Descriptor: 1-(4-methylpyridin-2-yl)-3-[3-(trifluoromethyl)phenyl]thiourea, Probable G-protein coupled receptor 101
Authors:Sun, J.P, Yu, X, Gao, N, Yang, F, Wang, J.Y, Yang, Z, Guan, Y, Wang, G.P.
Deposit date:2023-09-04
Release date:2024-01-03
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure of GPR101-Gs enables identification of ligands with rejuvenating potential.
Nat.Chem.Biol., 20, 2024
8W8R
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BU of 8w8r by Molmil
Cryo-EM structure of the AA-14-bound GPR101-Gs complex
Descriptor: 1-(4-methylpyridin-2-yl)-3-[3-(trifluoromethyl)phenyl]thiourea, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Sun, J.P, Yu, X, Gao, N, Yang, F, Wang, J.Y, Yang, Z, Guan, Y, Wang, G.P.
Deposit date:2023-09-04
Release date:2024-01-03
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure of GPR101-Gs enables identification of ligands with rejuvenating potential.
Nat.Chem.Biol., 20, 2024
6WXV
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BU of 6wxv by Molmil
CryoEM structure of mouse DUOX1-DUOXA1 complex in the presence of NADPH
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, DIUNDECYL PHOSPHATIDYL CHOLINE, ...
Authors:Sun, J.
Deposit date:2020-05-12
Release date:2020-09-02
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structures of mouse DUOX1-DUOXA1 provide mechanistic insights into enzyme activation and regulation.
Nat.Struct.Mol.Biol., 27, 2020
6WXU
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BU of 6wxu by Molmil
CryoEM structure of mouse DUOX1-DUOXA1 complex in the dimer-of-dimer state
Descriptor: 1,2-DILAUROYL-SN-GLYCERO-3-PHOSPHATE, 2-acetamido-2-deoxy-beta-D-glucopyranose, DIUNDECYL PHOSPHATIDYL CHOLINE, ...
Authors:Sun, J.
Deposit date:2020-05-12
Release date:2020-09-02
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structures of mouse DUOX1-DUOXA1 provide mechanistic insights into enzyme activation and regulation.
Nat.Struct.Mol.Biol., 27, 2020
8XZB
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BU of 8xzb by Molmil
The structure of fox ACE2 and SARS-CoV RBD complex
Descriptor: Angiotensin-converting enzyme, Spike protein S1, ZINC ION
Authors:sun, J.Q.
Deposit date:2024-01-21
Release date:2024-07-03
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.12 Å)
Cite:The binding and structural basis of fox ACE2 to RBDs from different sarbecoviruses.
Virol Sin, 39, 2024
1PA9
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BU of 1pa9 by Molmil
Yersinia Protein-Tyrosine Phosphatase complexed with pNCS (Yop51,Pasteurella X,Ptpase,Yop51delta162) (Catalytic Domain, Residues 163-468) Mutant With Cys 235 Replaced By Arg (C235r)
Descriptor: N,4-DIHYDROXY-N-OXO-3-(SULFOOXY)BENZENAMINIUM, Protein-tyrosine phosphatase yopH
Authors:Sun, J.P, Wu, L, Fedorov, A.A, Almo, S.C, Zhang, Z.Y.
Deposit date:2003-05-13
Release date:2003-11-04
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the Yersinia protein-tyrosine phosphatase YopH complexed with a specific small molecule inhibitor
J.BIOL.CHEM., 278, 2003
8EYT
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BU of 8eyt by Molmil
30S_delta_ksgA+KsgA complex
Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
Authors:Sun, J, Kinman, L.F, Jahagirdar, D, Ortega, J, Davis, J.H.
Deposit date:2022-10-28
Release date:2023-09-06
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:KsgA facilitates ribosomal small subunit maturation by proofreading a key structural lesion.
Nat.Struct.Mol.Biol., 30, 2023
1PXH
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BU of 1pxh by Molmil
Crystal structure of protein tyrosine phosphatase 1B with potent and selective bidentate inhibitor compound 2
Descriptor: ACETIC ACID, MAGNESIUM ION, N-{1-[5-(1-CARBAMOYL-2-MERCAPTO-ETHYLCARBAMOYL)-PENTYLCARBAMOYL]-2-[4-(DIFLUORO-PHOSPHONO-METHYL)-PHENYL]-ETHYL}-3-{2-[4-(DIFLUORO-PHOSPHONO-METHYL)-PHENYL]-ACETYLAMINO}-SUCCINAMIC ACID, ...
Authors:Sun, J.P, Fedorov, A, Lee, S.Y, Guo, X.L, Shen, K, Lawrence, D.S, Almo, S.C, Zhang, Z.Y.
Deposit date:2003-07-04
Release date:2003-08-12
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structure of PTP1B complexed with a potent and selective bidentate inhibitor.
J.Biol.Chem., 278, 2003
3OIQ
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BU of 3oiq by Molmil
Crystal structure of yeast telomere protein Cdc13 OB1 and the catalytic subunit of DNA polymerase alpha Pol1
Descriptor: Cell division control protein 13, DNA polymerase alpha catalytic subunit A
Authors:Sun, J, Yang, Y, Wan, K, Mao, N, Yu, T.Y, Lin, Y.C, DeZwaan, D.C, Freeman, B.C, Lin, J.J, Lue, N.F, Lei, M.
Deposit date:2010-08-19
Release date:2010-11-03
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural bases of dimerization of yeast telomere protein Cdc13 and its interaction with the catalytic subunit of DNA polymerase alpha.
Cell Res., 21, 2011
3OIP
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BU of 3oip by Molmil
Crystal structure of Yeast telomere protein Cdc13 OB1
Descriptor: Cell division control protein 13
Authors:Sun, J, Yang, Y, Wan, K, Mao, N, Yu, T.Y, Lin, Y.C, DeZwaan, D.C, Freeman, B.C, Lin, J.J, Lue, N.F, Lei, M.
Deposit date:2010-08-19
Release date:2010-11-03
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.504 Å)
Cite:Structural bases of dimerization of yeast telomere protein Cdc13 and its interaction with the catalytic subunit of DNA polymerase alpha.
Cell Res., 21, 2011
8XG1
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BU of 8xg1 by Molmil
Dual receptor-binding, infectivity, and transmissibility of an emerging H2N2 avian influenza virus
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin, N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose
Authors:Sun, J, Zheng, T.Y.
Deposit date:2023-12-14
Release date:2024-12-18
Last modified:2025-01-15
Method:ELECTRON MICROSCOPY (2.53 Å)
Cite:Dual receptor-binding, infectivity, and transmissibility of an emerging H2N2 low pathogenicity avian influenza virus.
Nat Commun, 15, 2024

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