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PDB: 297 results

7T9F
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Structure of VcINDY-apo
Descriptor: DASS family sodium-coupled anion symporter
Authors:Sauer, D.B, Marden, J.J, Song, J.M, Wang, D.N.
Deposit date:2021-12-19
Release date:2022-05-25
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (3.23 Å)
Cite:Structural basis of ion - substrate coupling in the Na + -dependent dicarboxylate transporter VcINDY.
Nat Commun, 13, 2022
7T9G
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Structure of VcINDY-Na+
Descriptor: DASS family sodium-coupled anion symporter, SODIUM ION
Authors:Sauer, D.B, Marden, J.J, Song, J.M, Wang, D.N.
Deposit date:2021-12-19
Release date:2022-05-25
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (2.83 Å)
Cite:Structural basis of ion - substrate coupling in the Na + -dependent dicarboxylate transporter VcINDY.
Nat Commun, 13, 2022
1G11
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TOLUENE-4-MONOOXYGENASE CATALYTIC EFFECTOR PROTEIN NMR STRUCTURE
Descriptor: TOLUENE-4-MONOOXYGENASE CATALYTIC EFFECTOR
Authors:Hemmi, H, Studts, J.M, Chae, Y.K, Song, J, Markley, J.L, Fox, B.G.
Deposit date:2000-10-10
Release date:2001-05-09
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of the toluene 4-monooxygenase effector protein (T4moD).
Biochemistry, 40, 2001
1G10
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TOLUENE-4-MONOOXYGENASE CATALYTIC EFFECTOR PROTEIN NMR STRUCTURE
Descriptor: TOLUENE-4-MONOOXYGENASE CATALYTIC EFFECTOR
Authors:Hemmi, H, Studts, J.M, Chae, Y.K, Song, J, Markley, J.L, Fox, B.G.
Deposit date:2000-10-10
Release date:2001-05-09
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of the toluene 4-monooxygenase effector protein (T4moD).
Biochemistry, 40, 2001
7UBU
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Crystal structure of ZMET2 in complex with hemimethylated CAG DNA and a histone H3Kc9me2 peptide
Descriptor: 5MC SSDNA, C49 SSDNA, DNA (cytosine-5)-methyltransferase 1, ...
Authors:Fang, J, Song, J.
Deposit date:2022-03-15
Release date:2022-06-08
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Mechanistic basis for maintenance of CHG DNA methylation in plants.
Nat Commun, 13, 2022
7SUO
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Crystal Structure of the G3BP1 NTF2-like domain bound to the IDR1 of SARS-CoV-2 nucleocapsid protein
Descriptor: Nucleoprotein, Ras GTPase-activating protein-binding protein 1
Authors:Biswal, M, Lu, J, Song, J.
Deposit date:2021-11-17
Release date:2022-03-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:SARS-CoV-2 Nucleocapsid Protein Targets a Conserved Surface Groove of the NTF2-like Domain of G3BP1.
J.Mol.Biol., 434, 2022
6W89
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Structure of DNMT3A (R882H) in complex with CGA DNA
Descriptor: CGA DNA (25-MER), CITRIC ACID, DNA (cytosine-5)-methyltransferase 3-like, ...
Authors:Anteneh, H, Song, J.
Deposit date:2020-03-20
Release date:2020-04-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.499 Å)
Cite:Structural basis for impairment of DNA methylation by the DNMT3A R882H mutation.
Nat Commun, 11, 2020
1PW4
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Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Descriptor: Glycerol-3-phosphate transporter
Authors:Huang, Y, Lemieux, M.J, Song, J, Auer, M, Wang, D.N.
Deposit date:2003-06-30
Release date:2003-08-05
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure and Mechanism of the Glycerol-3-Phosphate Transporter from Escherichia Coli
Science, 301, 2003
6UX2
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Crystal structure of ZIKV RdRp in complex with STAT2
Descriptor: Nonstructural Protein 5, SULFATE ION, Signal transducer and activator of transcription 2, ...
Authors:Wang, B, Song, J.
Deposit date:2019-11-06
Release date:2020-07-08
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Structural basis for STAT2 suppression by flavivirus NS5.
Nat.Struct.Mol.Biol., 27, 2020
6W8B
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Structure of DNMT3A in complex with CGA DNA
Descriptor: CGA DNA (25-MER), DNA (cytosine-5)-methyltransferase 3-like, DNA (cytosine-5)-methyltransferase 3A, ...
Authors:Anteneh, H, Song, J.
Deposit date:2020-03-20
Release date:2020-04-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for impairment of DNA methylation by the DNMT3A R882H mutation.
Nat Commun, 11, 2020
6NAC
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Crystal structure of [FeFe]-hydrogenase I (CpI) solved with single pulse free electron laser data
Descriptor: FE2/S2 (INORGANIC) CLUSTER, GLYCEROL, IRON/SULFUR CLUSTER, ...
Authors:Cohen, A.E, Davidson, C.M, Zadvornyy, O.A, Keable, S.M, Lyubimov, A.Y, Song, J, McPhillips, S.E, Soltis, S.M, Peters, J.W.
Deposit date:2018-12-05
Release date:2019-12-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Tuning Catalytic Bias of Hydrogen Gas Producing Hydrogenases.
J.Am.Chem.Soc., 142, 2020
6VX4
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Density-fitted Model Structure of Antibody Variable Domains of TyTx11 in Complex with Typhoid Toxin
Descriptor: Cytolethal distending toxin subunit B, Pertussis like toxin subunit B, Pertussis toxin-like subunit ArtA, ...
Authors:Nguyen, T, Song, J.
Deposit date:2020-02-21
Release date:2021-02-24
Last modified:2021-07-14
Method:ELECTRON MICROSCOPY (3.12 Å)
Cite:Mechanisms of typhoid toxin neutralization by antibodies targeting glycan receptor binding and nuclease subunits.
Iscience, 24, 2021
8T12
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Cryo-EM structure of DENV2 NS5 in complex with human STAT2 with the N-terminal domain of STAT2 ordered.
Descriptor: Non-structural protein 5, Signal transducer and activator of transcription 2, ZINC ION
Authors:Biswal, M, Lu, J, Song, J.
Deposit date:2023-06-01
Release date:2024-01-17
Method:ELECTRON MICROSCOPY (3.34 Å)
Cite:Cryo-EM structure of DENV2 NS5 in complex with human STAT2 with the N-terminal domain of STAT2 ordered.
To Be Published
8T13
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Cryo-EM structure of DENV2 NS5 in complex with human STAT2 with the N-terminal domain of STAT2 disordered
Descriptor: Non-structural protein 5, Signal transducer and activator of transcription 2, ZINC ION
Authors:Biswal, M, Lu, J, Song, J.
Deposit date:2023-06-01
Release date:2024-01-17
Method:ELECTRON MICROSCOPY (3.45 Å)
Cite:Cryo-EM structure of DENV2 NS5 in complex with human STAT2 with the N-terminal domain of STAT2 disordered
To Be Published
7LO8
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BU of 7lo8 by Molmil
NorA in complex with Fab36
Descriptor: Fab36 Heavy Chain, Fab36 Light Chain, Quinolone resistance protein NorA
Authors:Brawley, D.N, Sauer, D.B, Song, J.M, Koide, A, Koide, S, Traaseth, N.J, Wang, D.N.
Deposit date:2021-02-09
Release date:2022-04-20
Last modified:2022-07-13
Method:ELECTRON MICROSCOPY (3.16 Å)
Cite:Structural basis for inhibition of the drug efflux pump NorA from Staphylococcus aureus.
Nat.Chem.Biol., 18, 2022
7LO7
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BU of 7lo7 by Molmil
NorA in complex with Fab25
Descriptor: Fab25 Heavy Chain, Fab25 Light Chain, Quinolone resistance protein NorA
Authors:Brawley, D.N, Sauer, D.B, Song, J.M, Koide, A, Koide, S, Traaseth, N.J, Wang, D.N.
Deposit date:2021-02-09
Release date:2022-04-20
Last modified:2022-07-13
Method:ELECTRON MICROSCOPY (3.74 Å)
Cite:Structural basis for inhibition of the drug efflux pump NorA from Staphylococcus aureus.
Nat.Chem.Biol., 18, 2022
3GXU
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BU of 3gxu by Molmil
Crystal structure of Eph receptor and ephrin complex
Descriptor: Ephrin type-A receptor 4, Ephrin-B2
Authors:Qin, H.N, Song, J.X.
Deposit date:2009-04-03
Release date:2009-10-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural characterization of the EphA4-ephrin-B2 complex reveals new features enabling Eph-ephrin binding promiscuity
J.Biol.Chem., 2009
6W8V
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BU of 6w8v by Molmil
Crystal structure of mouse DNMT1 in complex with ACG DNA
Descriptor: ACG DNA (5'-D(*AP*CP*TP*TP*AP*(C49)P*GP*GP*AP*AP*GP*G)-3'), ACG DNA (5'-D(*CP*CP*TP*TP*CP*(5CM)P*GP*TP*AP*AP*GP*T)-3'), DNA (cytosine-5)-methyltransferase 1, ...
Authors:Anteneh, H, Song, J.
Deposit date:2020-03-21
Release date:2020-07-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.12 Å)
Cite:DNMT1 activity, base flipping mechanism and genome-wide DNA methylation are regulated by the DNA sequence context
Nat Commun, 2020
6W8D
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Structure of DNMT3A (R882H) in complex with CGT DNA
Descriptor: CGT DNA (25-MER), DNA (cytosine-5)-methyltransferase 3-like, DNA (cytosine-5)-methyltransferase 3A, ...
Authors:Anteneh, H, Song, J.
Deposit date:2020-03-20
Release date:2020-04-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.598 Å)
Cite:Structural basis for impairment of DNA methylation by the DNMT3A R882H mutation.
Nat Commun, 11, 2020
6W8J
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Structure of DNMT3A (R882H) in complex with CAG DNA
Descriptor: CAG DNA (25-MER), DNA (cytosine-5)-methyltransferase 3-like, DNA (cytosine-5)-methyltransferase 3A, ...
Authors:Anteneh, H, Song, J.
Deposit date:2020-03-20
Release date:2020-04-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.445 Å)
Cite:Structural basis for impairment of DNA methylation by the DNMT3A R882H mutation.
Nat Commun, 11, 2020
6RMH
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The Rigid-body refined model of the normal Huntingtin.
Descriptor: Huntingtin
Authors:Jung, T, Tamo, G, Dal Perraro, M, Hebert, H, Song, J.
Deposit date:2019-05-06
Release date:2020-06-03
Last modified:2020-12-16
Method:ELECTRON MICROSCOPY (9.6 Å)
Cite:The Polyglutamine Expansion at the N-Terminal of Huntingtin Protein Modulates the Dynamic Configuration and Phosphorylation of the C-Terminal HEAT Domain.
Structure, 28, 2020
6W8W
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Crystal structure of mouse DNMT1 in complex with CCG DNA
Descriptor: CCG DNA (5'-D(*AP*CP*TP*TP*AP*(5CM)P*GP*GP*AP*AP*GP*G)-3'), CCG DNA (5'-D(*CP*CP*TP*TP*CP*(C49)P*GP*TP*AP*AP*GP*T)-3'), DNA (cytosine-5)-methyltransferase 1, ...
Authors:Anteneh, H, Song, J.
Deposit date:2020-03-21
Release date:2020-07-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3 Å)
Cite:DNMT1 activity, base flipping mechanism and genome-wide DNA methylation are regulated by the DNA sequence context
Nat Commun, 2020
8U5H
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Cryo-EM structure of human DNMT3A UDR bound to H2AK119ub1-modified nucleosome
Descriptor: DNA (cytosine-5)-methyltransferase 3A, Histone H2A, Histone H2B 1.1, ...
Authors:Chen, X, Song, J.
Deposit date:2023-09-12
Release date:2024-06-12
Method:ELECTRON MICROSCOPY (3.23 Å)
Cite:Cryo-EM structure of human DNMT3A N-terminal domain bound to H2AK119Ub nucleosome
To Be Published
6P3W
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Crystal structure of the Cyclin A-CDK2-ORC1 complex
Descriptor: Cyclin-A2, Cyclin-dependent kinase 2, ORC1 Peptide, ...
Authors:Wang, B, Song, J.
Deposit date:2019-05-24
Release date:2019-07-31
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:Structural basis for the ORC1-Cyclin A association.
Protein Sci., 28, 2019
7LMM
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Crystal structure of bovine DNMT1 BAH1 domain in complex with H4K20me2
Descriptor: DNA (cytosine-5)-methyltransferase 1,DNA (cytosine-5)-methyltransferase 1, Histone H4, ZINC ION
Authors:Ren, W, Song, J.
Deposit date:2021-02-05
Release date:2021-02-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.798 Å)
Cite:DNMT1 reads heterochromatic H4K20me3 to reinforce LINE-1 DNA methylation.
Nat Commun, 12, 2021

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