Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 1988 results

5J2K
DownloadVisualize
BU of 5j2k by Molmil
Ternary complex crystal structure of DNA polymerase Beta with T:T mismatch at the primer terminus
Descriptor: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, CHLORIDE ION, DNA polymerase beta, ...
Authors:Batra, V.K, Wilson, S.H.
Deposit date:2016-03-29
Release date:2016-10-26
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism.
Structure, 24, 2016
5J0O
DownloadVisualize
BU of 5j0o by Molmil
Binary complex crystal structure of DNA polymerase Beta with A:A mismatch at the primer terminus
Descriptor: DNA (5'-D(*CP*CP*GP*AP*CP*AP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ...
Authors:Batra, V.K, Wilson, S.H.
Deposit date:2016-03-28
Release date:2016-10-26
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism.
Structure, 24, 2016
5J0W
DownloadVisualize
BU of 5j0w by Molmil
Binary complex crystal structure of DNA polymerase Beta with T:C mismatch at the primer terminus
Descriptor: DNA polymerase beta, Downstream Primer Strand, Primer Strand, ...
Authors:Batra, V.K, Wilson, S.H.
Deposit date:2016-03-28
Release date:2016-10-26
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism.
Structure, 24, 2016
1IHX
DownloadVisualize
BU of 1ihx by Molmil
Crystal structure of two D-glyceraldehyde-3-phosphate dehydrogenase complexes: a case of asymmetry
Descriptor: GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, SULFATE ION, THIONICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Shen, Y.-Q, Song, S.-Y, Lin, Z.-J.
Deposit date:2001-04-20
Release date:2002-07-31
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structures of D-glyceraldehyde-3-phosphate dehydrogenase complexed with coenzyme analogues.
Acta Crystallogr.,Sect.D, 58, 2002
4GAF
DownloadVisualize
BU of 4gaf by Molmil
Crystal structure of EBI-005, a chimera of human IL-1beta and IL-1Ra, bound to human Interleukin-1 receptor type 1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, EBI-005, Interleukin-1 receptor type 1, ...
Authors:Hou, J, Townson, S.A, Kovalchin, J.T, Masci, A, Kiner, O, Shu, Y, King, B, Thomas, C, Garcia, K.C, Furfine, E.S, Barnes, T.M.
Deposit date:2012-07-25
Release date:2013-02-20
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Design of a superior cytokine antagonist for topical ophthalmic use.
Proc.Natl.Acad.Sci.USA, 110, 2013
3ZXU
DownloadVisualize
BU of 3zxu by Molmil
Crystal structure of the Ctf19-Mcm21 kinetochore heterodimer from yeast
Descriptor: CALCIUM ION, CTF19, MCM21
Authors:Schmitzberger, F, Harrison, S.C.
Deposit date:2011-08-15
Release date:2012-03-14
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Rwd Domain: A Recurring Module in Kinetochore Architecture Shown by a Ctf19-Mcm21 Complex Structure.
Embo Rep., 13, 2012
2HUT
DownloadVisualize
BU of 2hut by Molmil
Crystal structure of PH0725 from Pyrococcus horikoshii OT3
Descriptor: Probable diphthine synthase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Sugahara, M, Saraboji, K, Malathy sony, S.M, Ponnuswamy, M.N, Kumarevel, T.S, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-07-27
Release date:2007-01-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
2HUV
DownloadVisualize
BU of 2huv by Molmil
Crystal structure of PH0725 from Pyrococcus horikoshii OT3
Descriptor: PLATINUM (II) ION, Probable diphthine synthase, S-ADENOSYL-L-HOMOCYSTEINE, ...
Authors:Sugahara, M, Saraboji, K, Malathy sony, S.M, Ponnuswamy, M.N, Kumarevel, T.S, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-07-27
Release date:2007-01-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
2I3S
DownloadVisualize
BU of 2i3s by Molmil
Bub3 complex with Bub1 GLEBS motif
Descriptor: Cell cycle arrest protein, Checkpoint serine/threonine-protein kinase
Authors:Larsen, N.A, Harrison, S.C.
Deposit date:2006-08-20
Release date:2007-01-09
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural analysis of Bub3 interactions in the mitotic spindle checkpoint.
Proc.Natl.Acad.Sci.Usa, 104, 2007
2Z75
DownloadVisualize
BU of 2z75 by Molmil
T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate
Descriptor: 2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose, MAGNESIUM ION, glmS ribozyme RNA, ...
Authors:Klein, D.J, Wilkinson, S.R, Been, M.D, Ferre-D'Amare, A.R.
Deposit date:2007-08-15
Release date:2007-09-04
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Requirement of helix P2.2 and nucleotide G1 for positioning the cleavage site and cofactor of the glmS ribozyme
J.Mol.Biol., 373, 2007
2B6P
DownloadVisualize
BU of 2b6p by Molmil
X-ray structure of lens Aquaporin-0 (AQP0) (lens MIP) in an open pore state
Descriptor: Lens fiber major intrinsic protein
Authors:Gonen, T, Cheng, Y, Sliz, P, Hiroaki, Y, Fujiyoshi, Y, Harrison, S.C, Walz, T.
Deposit date:2005-10-03
Release date:2005-12-06
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Lipid-protein interactions in double-layered two-dimensional AQP0 crystals.
Nature, 438, 2005
2NU0
DownloadVisualize
BU of 2nu0 by Molmil
Molecular structures of the complexes of SGPB with OMTKY3 aromatic P1 variants Trp18I, His18I, Phe18I, and Tyr18I
Descriptor: Ovomucoid, Streptogrisin B, Protease B
Authors:Bateman, K.S, Anderson, S, Lu, W, Qasim, M.A, Huang, K, Laskowski Jr, M, James, M.N.G.
Deposit date:2006-11-08
Release date:2006-11-21
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Molecular structures of the complexes of SGPB with OMTKY3 aromatic P1 variants Trp18I, His18I, Phe18I, and Tyr18I
To be Published
5TCS
DownloadVisualize
BU of 5tcs by Molmil
Crystal structure of a Dwarf Ndc80 Tetramer
Descriptor: Kinetochore protein NDC80, Kinetochore protein NUF2, Kinetochore protein SPC24, ...
Authors:Valverde, R, Harrison, S.C.
Deposit date:2016-09-15
Release date:2016-11-23
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.8313 Å)
Cite:Conserved Tetramer Junction in the Kinetochore Ndc80 Complex.
Cell Rep, 17, 2016
3N0R
DownloadVisualize
BU of 3n0r by Molmil
Structure of the PhyR stress response regulator at 1.25 Angstrom resolution
Descriptor: GLYCEROL, Response regulator
Authors:Herrou, J, Crosson, S.
Deposit date:2010-05-14
Release date:2010-08-11
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.251 Å)
Cite:A structural model of anti-anti-sigma inhibition by a two-component receiver domain: the PhyR stress response regulator
Mol.Microbiol., 78, 2010
2I3T
DownloadVisualize
BU of 2i3t by Molmil
Bub3 complex with Mad3 (BubR1) GLEBS motif
Descriptor: Cell cycle arrest protein, Spindle assembly checkpoint component
Authors:Larsen, N.A, Harrison, S.C.
Deposit date:2006-08-20
Release date:2007-01-09
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural analysis of Bub3 interactions in the mitotic spindle checkpoint.
Proc.Natl.Acad.Sci.Usa, 104, 2007
1UZG
DownloadVisualize
BU of 1uzg by Molmil
CRYSTAL STRUCTURE OF THE DENGUE TYPE 3 VIRUS ENVELOPE PROTEIN
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, MAJOR ENVELOPE PROTEIN E, alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Modis, Y, Harrison, S.C.
Deposit date:2004-03-11
Release date:2005-03-15
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Variable Surface Epitopes in the Crystal Structure of Dengue Virus Type 3 Envelope Glycoprotein
J.Virol., 79, 2005
1T4C
DownloadVisualize
BU of 1t4c by Molmil
Formyl-CoA Transferase in complex with Oxalyl-CoA
Descriptor: COENZYME A, Formyl-CoA:oxalate CoA-transferase, OXALIC ACID
Authors:Ricagno, S, Jonsson, S, Richards, N.G, Lindqvist, Y.
Deposit date:2004-04-29
Release date:2004-08-03
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Kinetic and mechanistic characterization of the formyl-CoA transferase from Oxalobacter formigenes
J.Biol.Chem., 279, 2004
4GR9
DownloadVisualize
BU of 4gr9 by Molmil
Synthesis of novel MT3 receptor ligands via unusual Knoevenagel condensation
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, N-[(3R)-3-(cyanomethyl)-1-methyl-2-oxo-2,3-dihydro-1H-indol-5-yl]acetamide, ...
Authors:Volkova, M.S, Jensen, K.C, Lozinskaya, N.A, Sosonyuk, S.E, Proskurnina, M.V, Mesecar, A.D, Zefirov, N.S.
Deposit date:2012-08-24
Release date:2013-07-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.291 Å)
Cite:Synthesis of novel МТ3 receptor ligands via an unusual Knoevenagel condensation.
Bioorg.Med.Chem.Lett., 22, 2012
2NU1
DownloadVisualize
BU of 2nu1 by Molmil
Molecular structures of the complexes of SGPB with OMTKY3 aromatic P1 variants Trp18I, His18I, Phe18I and Tyr18I
Descriptor: Ovomucoid, Streptogrisin B
Authors:Bateman, K.S, Anderson, S, Lu, W, Qasim, M.A, Huang, K, Laskowski Jr, M, James, M.N.G.
Deposit date:2006-11-08
Release date:2006-11-21
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Molecular structures of the complexes of SGPB with OMTKY3 aromatic P1 variants Trp18I, His18I, Phe18I and Tyr18I
To be Published
3EGY
DownloadVisualize
BU of 3egy by Molmil
Crystal Structure of Human Thymidyalte Synthase A191K with Loop 181-197 stabilized in the inactive conformation
Descriptor: 1,2-ETHANEDIOL, SULFATE ION, Thymidylate synthase
Authors:Lovelace, L.L, Gibson, L.M, Johnson, S.R, Berger, S.H, Lebioda, L.
Deposit date:2008-09-11
Release date:2009-08-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Variants of human thymidylate synthase with loop 181-197 stabilized in the inactive conformation.
Protein Sci., 18, 2009
1RHU
DownloadVisualize
BU of 1rhu by Molmil
CRYSTAL STRUCTURE OF THE COMPLEX OF CASPASE-3 WITH A 5,6,7 TRICYCLIC PEPTIDOMIMETIC INHIBITOR
Descriptor: (3S)-3-[({(2S)-5-[(N-ACETYL-L-ALPHA-ASPARTYL)AMINO]-4-OXO-1,2,4,5,6,7-HEXAHYDROAZEPINO[3,2,1-HI]INDOL-2-YL}CARBONYL)AMINO]-5-(BENZYLSULFANYL)-4-OXOPENTANOIC ACID, Caspase-3
Authors:Becker, J.W, Rotonda, J, Soisson, S.M.
Deposit date:2003-11-14
Release date:2004-05-11
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Reducing the Peptidyl Features of Caspase-3 Inhibitors: A Structural Analysis.
J.Med.Chem., 47, 2004
1TF6
DownloadVisualize
BU of 1tf6 by Molmil
CO-CRYSTAL STRUCTURE OF XENOPUS TFIIIA ZINC FINGER DOMAIN BOUND TO THE 5S RIBOSOMAL RNA GENE INTERNAL CONTROL REGION
Descriptor: DNA (5'-D(*AP*CP*GP*GP*GP*CP*CP*TP*GP*GP*TP*TP*AP*GP*TP*AP*C P*CP*TP*GP*GP*AP* TP*GP*GP*GP*AP*GP*AP*CP*C)-3'), DNA (5'-D(*TP*GP*GP*TP*CP*TP*CP*CP*CP*AP*TP*CP*CP*AP*GP*GP*T P*AP*CP*TP*AP*AP* CP*CP*AP*GP*GP*CP*CP*CP*G)-3'), PROTEIN (TRANSCRIPTION FACTOR IIIA), ...
Authors:Nolte, R.T, Conlin, R.M, Harrison, S.C, Brown, R.S.
Deposit date:1998-03-02
Release date:1998-07-10
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Differing roles for zinc fingers in DNA recognition: structure of a six-finger transcription factor IIIA complex.
Proc.Natl.Acad.Sci.USA, 95, 1998
4GRT
DownloadVisualize
BU of 4grt by Molmil
HUMAN GLUTATHIONE REDUCTASE A34E, R37W MUTANT, MIXED DISULFIDE BETWEEN TRYPANOTHIONE AND THE ENZYME
Descriptor: BIS(GAMMA-GLUTAMYL-CYSTEINYL-GLYCINYL)SPERMIDINE, FLAVIN-ADENINE DINUCLEOTIDE, GLUTATHIONE REDUCTASE
Authors:Stoll, V.S, Simpson, S.J, Krauth-Siegel, R.L, Walsh, C.T, Pai, E.F.
Deposit date:1997-02-12
Release date:1997-08-12
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Glutathione reductase turned into trypanothione reductase: structural analysis of an engineered change in substrate specificity.
Biochemistry, 36, 1997
4HQM
DownloadVisualize
BU of 4hqm by Molmil
The crystal structure of QsrR-menadione complex
Descriptor: 2-methylnaphthalene-1,4-diol, QsrR protein
Authors:Ji, Q, Zhang, L, Jones, M.B, Sun, F, Deng, X, Liang, H, Brugarolas, P, Gao, N, Peterson, S.N, Lan, L, Bae, T, He, C.
Deposit date:2012-10-25
Release date:2013-03-06
Last modified:2013-05-22
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Molecular mechanism of quinone signaling mediated through S-quinonization of a YodB family repressor QsrR.
Proc.Natl.Acad.Sci.USA, 110, 2013
3RZ4
DownloadVisualize
BU of 3rz4 by Molmil
Hen egg-white lysozyme in HEPES buffer at pH 7.5
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Lysozyme C
Authors:Peretoltchine, K, Bryson, S, Pai, E.F.
Deposit date:2011-05-11
Release date:2011-05-25
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Hen egg-white lysozyme in HEPES buffer at pH 7.5
To be Published

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon