Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 1971 results

4AVJ
DownloadVisualize
BU of 4avj by Molmil
Structure of the FimH lectin domain in the trigonal space group, in complex with a methanol triazol ethyl phenyl alpha-D-mannoside at 2.1 A resolution
Descriptor: FIMH, METHANOL TRIAZOL ETHYL PHENYL 1O-ALPHA-D-MANNOPYRANOSIDE, NICKEL (II) ION, ...
Authors:Wellens, A, Lahmann, M, Touaibia, M, Vaucher, J, Oscarson, S, Roy, R, Remaut, H, Bouckaert, J.
Deposit date:2012-05-26
Release date:2012-06-27
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.105 Å)
Cite:The Tyrosine Gate as a Potential Entropic Lever in the Receptor-Binding Site of the Bacterial Adhesin Fimh.
Biochemistry, 51, 2012
1VGQ
DownloadVisualize
BU of 1vgq by Molmil
Formyl-CoA transferase mutant Asp169 to Ala
Descriptor: Formyl-coenzyme A transferase, OXIDIZED COENZYME A
Authors:Ricagno, S, Jonsson, S, Richards, N.G, Lindqvist, Y.
Deposit date:2004-04-28
Release date:2004-08-03
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Kinetic and mechanistic characterization of the formyl-CoA transferase from Oxalobacter formigenes
J.Biol.Chem., 279, 2004
4FA3
DownloadVisualize
BU of 4fa3 by Molmil
Crystal structure of human 17beta-hydroxysteroid dehydrogenase type 5 in complex with (R)-1-(naphthalen-2-ylsulfonyl)piperidine-3-carboxylic acid (86)
Descriptor: (3R)-1-(naphthalen-2-ylsulfonyl)piperidine-3-carboxylic acid, 1,2-ETHANEDIOL, ACETATE ION, ...
Authors:Turnbull, A.P, Jamieson, S.M.F, Brooke, D.G, Heinrich, D, Atwell, G.J, Silva, S, Hamilton, E.J, Rigoreau, L.J.M, Trivier, E, Soudy, C, Samlal, S.S, Owen, P.J, Schroeder, E, Raynham, T, Flanagan, J.U, Denny, W.A.
Deposit date:2012-05-21
Release date:2012-10-10
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:3-(3,4-Dihydroisoquinolin-2(1H)-ylsulfonyl)benzoic acids; a New Class of Highly Potent and Selective Inhibitors of the Type 5 17-beta-hydroxysteroid Dehydrogenase AKR1C3
J.Med.Chem., 55, 2012
1WSX
DownloadVisualize
BU of 1wsx by Molmil
Solution structure of MCL-1
Descriptor: myeloid cell leukemia sequence 1
Authors:Day, C.L, Chen, L, Richardson, S.J, Harrison, P.J, Huang, D.C, Hinds, M.G.
Deposit date:2004-11-12
Release date:2004-11-23
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution Structure of Prosurvival Mcl-1 and Characterization of Its Binding by Proapoptotic BH3-only Ligands
J.Biol.Chem., 280, 2005
1YHV
DownloadVisualize
BU of 1yhv by Molmil
Crystal Structure of PAK1 kinase domain with two point mutations (K299R, T423E)
Descriptor: Serine/threonine-protein kinase PAK 1
Authors:Lei, M, Robinson, M.A, Harrison, S.C.
Deposit date:2005-01-10
Release date:2005-05-24
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Active Conformation of the PAK1 Kinase Domain
Structure, 13, 2005
2RAI
DownloadVisualize
BU of 2rai by Molmil
The PX-BAR membrane remodeling unit of Sorting Nexin 9
Descriptor: Sorting nexin-9
Authors:Pylypenko, O, Lundmark, R, Rasmuson, E, Carlsson, S.R, Rak, A.
Deposit date:2007-09-16
Release date:2007-12-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The PX-BAR membrane-remodeling unit of sorting nexin 9
Embo J., 26, 2007
4PJ3
DownloadVisualize
BU of 4pj3 by Molmil
Structural insight into the function and evolution of the spliceosomal helicase Aquarius, Structure of Aquarius in complex with AMPPNP
Descriptor: Intron-binding protein aquarius, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:De, I, Bessonov, S, Hofele, R, dos Santos, K.F, Will, C.L, Urlaub, H, Luhrmann, R, Pena, V.
Deposit date:2014-05-11
Release date:2015-01-21
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The RNA helicase Aquarius exhibits structural adaptations mediating its recruitment to spliceosomes.
Nat.Struct.Mol.Biol., 22, 2015
3H5C
DownloadVisualize
BU of 3h5c by Molmil
X-Ray Structure of Protein Z-Protein Z Inhibitor Complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Protein Z-dependent protease inhibitor, Vitamin K-dependent protein Z, ...
Authors:Dementiev, A.A, Huang, X, Olson, S.T, Gettins, P.G.W.
Deposit date:2009-04-21
Release date:2010-04-28
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3.26 Å)
Cite:Basis for the specificity and activation of the serpin protein Z-dependent proteinase inhibitor (ZPI) as an inhibitor of membrane-associated factor Xa.
J.Biol.Chem., 285, 2010
1VGR
DownloadVisualize
BU of 1vgr by Molmil
Formyl-CoA transferase mutant Asp169 to Glu
Descriptor: COENZYME A, Formyl-coenzyme A transferase
Authors:Ricagno, S, Jonsson, S, Richards, N.G, Lindqvist, Y.
Deposit date:2004-04-28
Release date:2004-08-03
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Kinetic and mechanistic characterization of the formyl-CoA transferase from Oxalobacter formigenes
J.Biol.Chem., 279, 2004
1HLK
DownloadVisualize
BU of 1hlk by Molmil
METALLO-BETA-LACTAMASE FROM BACTEROIDES FRAGILIS IN COMPLEX WITH A TRICYCLIC INHIBITOR
Descriptor: 7,8-DIHYDROXY-1-METHOXY-3-METHYL-10-OXO-4,10-DIHYDRO-1H,3H-PYRANO[4,3-B]CHROMENE-9-CARBOXYLIC ACID, BETA-LACTAMASE, TYPE II, ...
Authors:Payne, D.J, Hueso-Rodriguez, J.A, Boyd, H, Concha, N.O, Janson, C.A, Gilpin, M, Bateson, J.H, Chever, C, Niconovich, N.L, Pearson, S, Rittenhouse, S, Tew, D, Diez, E, Perez, P, de la Fuente, J, Rees, M, Rivera-Sagredo, A.
Deposit date:2000-12-01
Release date:2001-11-30
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Identification of a series of tricyclic natural products as potent broad spectrum inhibitors of metallo-beta-lactamases
Antimicrob.Agents Chemother., 46, 2002
4AR4
DownloadVisualize
BU of 4ar4 by Molmil
Neutron crystallographic structure of the reduced form perdeuterated Pyrococcus furiosus rubredoxin to 1.38 Angstrom resolution.
Descriptor: FE (III) ION, Rubredoxin, deuterium(1+), ...
Authors:Cuypers, M.G, Mason, S.A, Blakeley, M.P, Mitchell, E.P, Haertlein, M, Forsyth, V.T.
Deposit date:2012-04-20
Release date:2013-01-16
Last modified:2024-06-19
Method:NEUTRON DIFFRACTION (1.381 Å)
Cite:Near-Atomic Resolution Neutron Crystallography on Perdeuterated Pyrococcus Furiosus Rubredoxin: Implication of Hydronium Ions and Protonation State Equilibria in Redox Changes.
Angew.Chem.Int.Ed.Engl., 52, 2013
4AR3
DownloadVisualize
BU of 4ar3 by Molmil
Near-atomic resolution neutron crystallography on the oxidised form perdeuterated Pyrococcus furiosus rubredoxin.
Descriptor: FE (III) ION, Rubredoxin, deuterium(1+), ...
Authors:Cuypers, M.G, Mason, S.A, Blakeley, M.P, Mitchell, E.P, Haertlein, M, Forsyth, V.T.
Deposit date:2012-04-20
Release date:2013-01-16
Last modified:2024-05-08
Method:NEUTRON DIFFRACTION (1.05 Å)
Cite:Near-Atomic Resolution Neutron Crystallography on Perdeuterated Pyrococcus Furiosus Rubredoxin: Implication of Hydronium Ions and Protonation State Equilibria in Redox Changes.
Angew.Chem.Int.Ed.Engl., 52, 2013
3HOR
DownloadVisualize
BU of 3hor by Molmil
Structure of the actin-binding domain of human filamin A (reduced)
Descriptor: Filamin-A, PHOSPHATE ION
Authors:Clark, A.R, Sawyer, G.M, Robertson, S.P, Sutherland-Smith, A.J.
Deposit date:2009-06-03
Release date:2009-10-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Skeletal dysplasias due to filamin A mutations result from a gain-of-function mechanism distinct from allelic neurological disorders
Hum.Mol.Genet., 18, 2009
3HOC
DownloadVisualize
BU of 3hoc by Molmil
Structure of the actin-binding domain of human filamin A mutant E254K
Descriptor: Filamin-A, PHOSPHATE ION
Authors:Clark, A.R, Sawyer, G.M, Robertson, S.P, Sutherland-Smith, A.J.
Deposit date:2009-06-02
Release date:2009-10-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Skeletal dysplasias due to filamin A mutations result from a gain-of-function mechanism distinct from allelic neurological disorders
Hum.Mol.Genet., 18, 2009
4AU6
DownloadVisualize
BU of 4au6 by Molmil
Location of the dsRNA-dependent polymerase, VP1, in rotavirus particles
Descriptor: RNA-DEPENDENT RNA POLYMERASE
Authors:Estrozi, L.F, Settembre, E.C, Goret, G, McClain, B, Zhang, X, Chen, J.Z, Grigorieff, N, Harrison, S.C.
Deposit date:2012-05-14
Release date:2012-06-13
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (6 Å)
Cite:Location of the Dsrna-Dependent Polymerase, Vp1, in Rotavirus Particles.
J.Mol.Biol., 425, 2013
4AUY
DownloadVisualize
BU of 4auy by Molmil
Structure of the FimH lectin domain in the trigonal space group, in complex with an hydroxyl propynyl phenyl alpha-D-mannoside at 2.1 A resolution
Descriptor: 4-(3-hydroxyprop-1-yn-1-yl)phenyl alpha-D-mannopyranoside, FIMH, NICKEL (II) ION, ...
Authors:Wellens, A, Lahmann, M, Touaibia, M, Vaucher, J, Oscarson, S, Roy, R, Remaut, H, Bouckaert, J.
Deposit date:2012-05-22
Release date:2012-06-27
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.102 Å)
Cite:The Tyrosine Gate as a Potential Entropic Lever in the Receptor-Binding Site of the Bacterial Adhesin Fimh.
Biochemistry, 51, 2012
4AV0
DownloadVisualize
BU of 4av0 by Molmil
Structure of the FimH lectin domain in the trigonal space group, in complex with a methoxy phenyl propynyl alpha-D-mannoside at 2.1 A resolution
Descriptor: 3-(4-methoxyphenyl)prop-2-yn-1-yl alpha-D-mannopyranoside, FIMH, NICKEL (II) ION, ...
Authors:Wellens, A, Lahmann, M, Touaibia, M, Vaucher, J, Oscarson, S, Roy, R, Remaut, H, Bouckaert, J.
Deposit date:2012-05-23
Release date:2012-06-27
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.099 Å)
Cite:The Tyrosine Gate as a Potential Entropic Lever in the Receptor-Binding Site of the Bacterial Adhesin Fimh.
Biochemistry, 51, 2012
4QHK
DownloadVisualize
BU of 4qhk by Molmil
UCA (unbound) from CH103 Lineage
Descriptor: UCA heavy chain, UCA light chain
Authors:Fera, D, Harrison, S.C.
Deposit date:2014-05-28
Release date:2014-06-11
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.487 Å)
Cite:Affinity maturation in an HIV broadly neutralizing B-cell lineage through reorientation of variable domains.
Proc.Natl.Acad.Sci.USA, 111, 2014
3ISC
DownloadVisualize
BU of 3isc by Molmil
Binary complex of human DNA polymerase beta with an abasic site (THF) in the gapped DNA
Descriptor: 5'-D(*CP*CP*GP*AP*CP*(3DR)P*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3', 5'-D(P*GP*TP*CP*GP*G)-3', ...
Authors:Beard, W.A, Shock, D.D, Batra, V.K, Pedersen, L.C, Wilson, S.H.
Deposit date:2009-08-25
Release date:2009-09-15
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:DNA polymerase beta substrate specificity: side chain modulation of the "A-rule".
J.Biol.Chem., 284, 2009
1BPE
DownloadVisualize
BU of 1bpe by Molmil
CRYSTAL STRUCTURE OF RAT DNA POLYMERASE BETA; EVIDENCE FOR A COMMON POLYMERASE MECHANISM
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA POLYMERASE BETA
Authors:Sawaya, M.R, Pelletier, H, Kumar, A, Wilson, S.H, Kraut, J.
Deposit date:1994-04-12
Release date:1994-07-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of rat DNA polymerase beta: evidence for a common polymerase mechanism.
Science, 264, 1994
2OLD
DownloadVisualize
BU of 2old by Molmil
Bence Jones KWR Protein- Immunoglobulin Light Chain Dimer, P3(2)21 Crystal Form
Descriptor: Bence Jones KWR Protein - Immunoglobulin Light Chain, PHENOL, PHOSPHATE ION
Authors:Makino, D.L, Larson, S.B, McPherson, A.
Deposit date:2007-01-19
Release date:2007-07-17
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Bence Jones KWR protein structures determined by X-ray crystallography.
Acta Crystallogr.,Sect.D, 63, 2007
4E4S
DownloadVisualize
BU of 4e4s by Molmil
Crystal structure of Pika GITRL
Descriptor: GLYCEROL, MAGNESIUM ION, Tumor necrosis factor ligand superfamily member 18
Authors:Kumar, P.R, Bhosle, R, Bonanno, J, Chowdhury, S, Gizzi, A, Glen, S, Hillerich, B, Hammonds, J, Seidel, R, Toro, R, Nathenson, S.G, Almo, S.C, New York Structural Genomics Research Consortium (NYSGRC), Atoms-to-Animals: The Immune Function Network (IFN)
Deposit date:2012-03-13
Release date:2012-03-21
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of GITRL from Ochotona princeps
to be published
1UWF
DownloadVisualize
BU of 1uwf by Molmil
1.7 A resolution structure of the receptor binding domain of the FimH adhesin from uropathogenic E. coli
Descriptor: FIMH PROTEIN, GLYCEROL, butyl alpha-D-mannopyranoside
Authors:Bouckaert, J, Berglund, J, Genst, E.D, Cools, L, Hung, C.-S, Wuhrer, M, Zavialov, A, Langermann, S, Hultgren, S, Wyns, L, Oscarson, S, Knight, S.D, De Greve, H.
Deposit date:2004-02-05
Release date:2005-02-16
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Receptor Binding Studies Disclose a Novel Class of High-Affinity Inhibitors of the Escherichia Coli Fimh Adhesin.
Mol.Microbiol., 55, 2005
4FAM
DownloadVisualize
BU of 4fam by Molmil
Crystal structure of human 17beta-hydroxysteroid dehydrogenase type 5 in complex with 3-((3,4-dihydroisoquinolin-2(1H)-yl)sulfonyl)benzoic acid (17)
Descriptor: 1,2-ETHANEDIOL, 3-(3,4-dihydroisoquinolin-2(1H)-ylsulfonyl)benzoic acid, Aldo-keto reductase family 1 member C3, ...
Authors:Turnbull, A.P, Jamieson, S.M.F, Brooke, D.G, Heinrich, D, Atwell, G.J, Silva, S, Hamilton, E.J, Rigoreau, L.J.M, Trivier, E, Soudy, C, Samlal, S.S, Owen, P.J, Schroeder, E, Raynham, T, Flanagan, J.U, Denny, W.A.
Deposit date:2012-05-22
Release date:2012-10-10
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:3-(3,4-Dihydroisoquinolin-2(1H)-ylsulfonyl)benzoic acids; a New Class of Highly Potent and Selective Inhibitors of the Type 5 17-beta-hydroxysteroid Dehydrogenase AKR1C3
J.Med.Chem., 55, 2012
1TR7
DownloadVisualize
BU of 1tr7 by Molmil
FimH adhesin receptor binding domain from uropathogenic E. coli
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CACODYLATE ION, FimH protein, ...
Authors:Bouckaert, J, Berglund, J, Schembri, M, De Genst, E, Cools, L, Wuhrer, M, Hung, C.S, Pinkner, J, Slattegard, R, Zavialov, A, Choudhury, D, Langermann, S, Hultgren, S.J, Wyns, L, Klemm, P, Oscarson, S, Knight, S.D, De Greve, H.
Deposit date:2004-06-21
Release date:2005-05-03
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Receptor binding studies disclose a novel class of high-affinity inhibitors of the Escherichia coli FimH adhesin
Mol.Microbiol., 55, 2005

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon