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PDB: 1022 件

2ZBS
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Crystal structure of human estrogen-related receptor gamma ligand binding domain apo form
分子名称: Estrogen-related receptor gamma
著者Matsushima, A, Kakuta, Y, Teramoto, T, Shimohigashi, Y.
登録日2007-10-27
公開日2008-10-07
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献ERRgamma tethers strongly bisphenol A and 4-alpha-cumylphenol in an induced-fit manner
Biochem.Biophys.Res.Commun., 373, 2008
2ZAS
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Crystal structure of human estrogen-related receptor gamma ligand binding domain complex with 4-alpha-cumylphenol, a bisphenol A derivative
分子名称: 4-(1-methyl-1-phenylethyl)phenol, Estrogen-related receptor gamma, GLYCEROL
著者Matsushima, A, Kakuta, Y, Teramoto, T, Shimohigashi, Y.
登録日2007-10-09
公開日2008-10-07
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献ERRgamma tethers strongly bisphenol A and 4-alpha-cumylphenol in an induced-fit manner
Biochem.Biophys.Res.Commun., 373, 2008
3AB4
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Crystal structure of feedback inhibition resistant mutant of aspartate kinase from Corynebacterium glutamicum in complex with lysine and threonine
分子名称: Aspartokinase, LYSINE, THREONINE
著者Yoshida, A, Tomita, T, Kuzuyama, T, Nishiyama, M.
登録日2009-11-30
公開日2010-06-23
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.47 Å)
主引用文献Mechanism of concerted inhibition of {alpha}2{beta}2-type heterooligomeric aspartate kinase from Corynebacterium glutamicum
J.Biol.Chem., 285, 2010
3ADR
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The first crystal structure of an archaeal metallo-beta-lactamase superfamily protein; ST1585 from Sulfolobus tokodaii
分子名称: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Putative uncharacterized protein ST1585, ...
著者Shimada, A, Ishikawa, H, Nakagawa, N, Kuramitsu, S, Masui, R.
登録日2010-01-28
公開日2010-04-21
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The first crystal structure of an archaeal metallo-beta-lactamase superfamily protein; ST1585 from Sulfolobus tokodaii
Proteins, 78, 2010
3AH8
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Structure of heterotrimeric G protein Galpha-q beta gamma in complex with an inhibitor YM-254890
分子名称: GUANOSINE-5'-DIPHOSPHATE, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
著者Nishimura, A, Kitano, K, Takasaki, J, Taniguchi, M, Mizuno, N, Tago, K, Hakoshima, T, Itoh, H.
登録日2010-04-20
公開日2010-07-21
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural basis for the specific inhibition of heterotrimeric Gq protein by a small molecule.
Proc.Natl.Acad.Sci.USA, 107, 2010
2ZKC
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Crystal structure of human estrogen-related receptor gamma ligand binding domain complex with bisphenol Z
分子名称: 4,4'-cyclohexane-1,1-diyldiphenol, Estrogen-related receptor gamma, GLYCEROL
著者Matsushima, A, Kakuta, Y, Teramoto, T, Shimohigashi, Y.
登録日2008-03-14
公開日2009-03-17
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of human estrogen-related receptor gamma ligand binding domain complex with bisphenol Z
To be Published
2YZ1
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Crystal structure of the ligand-binding domain of murine SHPS-1/SIRP alpha
分子名称: Tyrosine-protein phosphatase non-receptor type substrate 1
著者Nakaishi, A.
登録日2007-05-02
公開日2007-12-11
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Structural insight into the specific interaction between murine SHPS-1/SIRP alpha and its ligand CD47
J.Mol.Biol., 375, 2008
2DOS
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BU of 2dos by Molmil
Structural basis for the recognition of Lys48-linked polyubiquitin chain by the Josephin domain of ataxin-3, a putative deubiquitinating enzyme
分子名称: Ataxin-3
著者Sumiyoshi, A.
登録日2006-05-03
公開日2007-05-22
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Mode of substrate recognition by the Josephin domain of ataxin-3, which has an endo-type deubiquitinase activity.
Febs Lett., 588, 2014
2EB0
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Crystal structure of Methanococcus jannaschii putative family II inorganic pyrophosphatase
分子名称: MANGANESE (II) ION, Manganese-dependent inorganic pyrophosphatase
著者Shimada, A, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-02-05
公開日2007-08-07
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of Methanococcus jannaschii inorganic pyrophosphatase
To be Published
2CXY
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Crystal structure of the hBAF250b AT-rich interaction domain (ARID)
分子名称: BAF250b subunit
著者Shimada, A, Niwa, H, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-07-01
公開日2006-10-10
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structure of the hBAF250b AT-rich interaction domain (ARID)
To be Published
2CVJ
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Crystal Structure of thioredoxin reductase-related protein TTHA0370 from Thermus thermophilus HB8
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, thioredoxin reductase related protein
著者Kashihara, A, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-06-04
公開日2005-12-04
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structure of thioredoxin reductase-related protein TTHA0370 from Thermus thermophilus HB8
To be Published
4V4O
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Crystal Structure of the Chaperonin Complex Cpn60/Cpn10/(ADP)7 from Thermus Thermophilus
分子名称: ADENOSINE-5'-DIPHOSPHATE, DIMETHYL SULFOXIDE, MAGNESIUM ION, ...
著者Shimamura, T, Koike-Takeshita, A, Yokoyama, K, Masui, R, Murai, N, Yoshida, M, Taguchi, H, Iwata, S.
登録日2004-05-23
公開日2014-07-09
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of the native chaperonin complex from Thermus thermophilus revealed unexpected asymmetry at the cis-cavity
STRUCTURE, 12, 2004
3UG0
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Crystal structure of a Trp-less green fluorescent protein translated by the simplified genetic code
分子名称: Green fluorescent protein
著者Kawahara-Kobayashi, A, Araiso, Y, Matsuda, T, Yokoyama, S, Kigawa, T, Nureki, O, Kiga, D.
登録日2011-11-02
公開日2012-10-17
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.093 Å)
主引用文献Simplification of the genetic code: restricted diversity of genetically encoded amino acids.
Nucleic Acids Res., 40, 2012
3UFZ
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BU of 3ufz by Molmil
Crystal structure of a Trp-less green fluorescent protein translated by the universal genetic code
分子名称: Green fluorescent protein
著者Kawahara-Kobayashi, A, Araiso, Y, Matsuda, T, Yokoyama, S, Kigawa, T, Nureki, O, Kiga, D.
登録日2011-11-02
公開日2012-10-17
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Simplification of the genetic code: restricted diversity of genetically encoded amino acids.
Nucleic Acids Res., 40, 2012
5VN9
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BU of 5vn9 by Molmil
Structure of bacteriorhodopsin from crystals grown at 4 deg C using GlyNCOC15+4 as an LCP host lipid
分子名称: Bacteriorhodopsin
著者Ishchenko, A, Peng, L, Zinovev, E, Vlasov, A, Lee, S.C, Kuklin, A, Mishin, A, Borshchevskiy, V, Zhang, Q, Cherezov, V.
登録日2017-04-28
公開日2017-07-12
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.594 Å)
主引用文献Chemically Stable Lipids for Membrane Protein Crystallization.
Cryst Growth Des, 17, 2017
4OV0
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BU of 4ov0 by Molmil
Structure of Bacteriorhdopsin Transferred from Amphipol A8-35 to a Lipidic Mesophase
分子名称: Bacteriorhodopsin, RETINAL
著者Polovinkin, V, Gushchin, I, Sintsov, M, Round, E, Balandin, T, Chervakov, P, Schevchenko, V, Utrobin, P, Popov, A, Borshchevskiy, V, Mishin, A, Kuklin, A, Willbold, D, Popot, J.L, Gordeliy, V.
登録日2014-02-19
公開日2014-10-01
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献High-resolution structure of a membrane protein transferred from amphipol to a lipidic mesophase.
J.Membr.Biol., 247, 2014
7QZH
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BU of 7qzh by Molmil
SFX structure of dye-type peroxidase DtpB D152A variant in the ferric state
分子名称: Dyp-type peroxidase family, MAGNESIUM ION, PROTOPORPHYRIN IX CONTAINING FE
著者Lucic, M, Worrall, J.A.R, Hough, M.A, Shilova, A, Axford, D.A, Owen, R.L, Tosha, T, Sugimoto, H, Owada, S.
登録日2022-01-31
公開日2022-12-07
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献Serial Femtosecond Crystallography Reveals the Role of Water in the One- or Two-Electron Redox Chemistry of Compound I in the Catalytic Cycle of the B-Type Dye-Decolorizing Peroxidase DtpB.
Acs Catalysis, 12, 2022
7QZE
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SFX structure of dye-type peroxidase DtpB D152A variant in the ferryl state
分子名称: Dyp-type peroxidase family, MAGNESIUM ION, OXYGEN ATOM, ...
著者Lucic, M, Worrall, J.A.R, Hough, M.A, Shilova, A, Axford, D.A, Owen, R.L, Tosha, T, Sugimoto, H, Owada, S.
登録日2022-01-31
公開日2022-12-07
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Serial Femtosecond Crystallography Reveals the Role of Water in the One- or Two-Electron Redox Chemistry of Compound I in the Catalytic Cycle of the B-Type Dye-Decolorizing Peroxidase DtpB.
Acs Catalysis, 12, 2022
7QZG
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SFX structure of dye-type peroxidase DtpB N245A variant in the ferric state
分子名称: Dyp-type peroxidase family, MAGNESIUM ION, PROTOPORPHYRIN IX CONTAINING FE
著者Lucic, M, Worrall, J.A.R, Hough, M.A, Shilova, A, Axford, D.A, Owen, R.L, Tosha, T, Sugimoto, H, Owada, S.
登録日2022-01-31
公開日2022-12-07
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Serial Femtosecond Crystallography Reveals the Role of Water in the One- or Two-Electron Redox Chemistry of Compound I in the Catalytic Cycle of the B-Type Dye-Decolorizing Peroxidase DtpB.
Acs Catalysis, 12, 2022
4FA8
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Multi-pronged modulation of cytokine signaling
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Macrophage colony-stimulating factor 1, Secreted protein BARF1, ...
著者He, X, Shim, A.H.
登録日2012-05-21
公開日2012-08-29
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Multipronged attenuation of macrophage-colony stimulating factor signaling by Epstein-Barr virus BARF1.
Proc.Natl.Acad.Sci.USA, 109, 2012
7QZF
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BU of 7qzf by Molmil
SFX structure of dye-type peroxidase DtpB D152A/N245A variant in the ferric state
分子名称: Dyp-type peroxidase family, MAGNESIUM ION, PROTOPORPHYRIN IX CONTAINING FE
著者Lucic, M, Worrall, J.A.R, Hough, M.A, Shilova, A, Owen, R.L, Axford, D, Tosha, T, Sugimoto, H, Owada, S.
登録日2022-01-31
公開日2022-12-07
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Serial Femtosecond Crystallography Reveals the Role of Water in the One- or Two-Electron Redox Chemistry of Compound I in the Catalytic Cycle of the B-Type Dye-Decolorizing Peroxidase DtpB.
Acs Catalysis, 12, 2022
2XCQ
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The 2.98A crystal structure of the catalytic core (B'A' region) of Staphylococcus aureus DNA Gyrase
分子名称: DNA GYRASE SUBUNIT B, DNA GYRASE SUBUNIT A
著者Bax, B.D, Chan, P.F, Eggleston, D.S, Fosberry, A, Gentry, D.R, Gorrec, F, Giordano, I, Hann, M.M, Hennessy, A, Hibbs, M, Huang, J, Jones, E, Jones, J, Brown, K.K, Lewis, C.J, May, E.W, Singh, O, Spitzfaden, C, Shen, C, Shillings, A, Theobald, A.F, Wohlkonig, A, Pearson, N.D, Gwynn, M.N.
登録日2010-04-24
公開日2010-08-04
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.98 Å)
主引用文献Type Iia Topoisomerase Inhibition by a New Class of Antibacterial Agents.
Nature, 466, 2010
2XCO
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The 3.1A crystal structure of the catalytic core (B'A' region) of Staphylococcus aureus DNA Gyrase
分子名称: CALCIUM ION, DNA GYRASE SUBUNIT B, DNA GYRASE SUBUNIT A
著者Bax, B.D, Chan, P.F, Eggleston, D.S, Fosberry, A, Gentry, D.R, Gorrec, F, Giordano, I, Hann, M.M, Hennessy, A, Hibbs, M, Huang, J, Jones, E, Jones, J, Brown, K.K, Lewis, C.J, May, E.W, Singh, O, Spitzfaden, C, Shen, C, Shillings, A, Theobald, A.F, Wohlkonig, A, Pearson, N.D, Gwynn, M.N.
登録日2010-04-24
公開日2010-08-04
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Type Iia Topoisomerase Inhibition by a New Class of Antibacterial Agents.
Nature, 466, 2010
6K8Q
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Solution structure of the intermembrane space domain of the mitochondrial import protein Tim21 from S. cerevisiae
分子名称: Mitochondrial import inner membrane translocase subunit TIM21
著者Bala, S, Shinya, S, Srivastava, A, Shimada, A, Kobayashi, N, Kojima, C, Tama, F, Miyashita, O, Kohda, D.
登録日2019-06-13
公開日2019-09-11
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Crystal contact-free conformation of an intrinsically flexible loop in protein crystal: Tim21 as the case study.
Biochim Biophys Acta Gen Subj, 1864, 2020
6KFF
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Undocked INX-6 hemichannel in a nanodisc
分子名称: Innexin-6
著者Burendei, B, Shinozaki, R, Watanabe, M, Terada, T, Tani, K, Fujiyoshi, Y, Oshima, A.
登録日2019-07-07
公開日2020-02-12
最終更新日2020-03-11
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Cryo-EM structures of undocked innexin-6 hemichannels in phospholipids.
Sci Adv, 6, 2020

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