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PDB: 38 件
5YA2
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BU of 5ya2 by Molmil
Crystal structure of LsrK-HPr complex with ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, Autoinducer-2 kinase, HEXANE-1,6-DIOL, ...
著者Ryu, K.S, Ha, J.H.
登録日2017-08-30
公開日2018-07-11
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.701 Å)
主引用文献Evidence of link between quorum sensing and sugar metabolism inEscherichia colirevealed via cocrystal structures of LsrK and HPr
Sci Adv, 4, 2018
3KYF
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BU of 3kyf by Molmil
Crystal structure of P4397 complexed with c-di-GMP
分子名称: GUANOSINE-5'-MONOPHOSPHATE, Putative uncharacterized protein
著者Ryu, K.S, Ko, J, Kim, H, Choi, B.S.
登録日2009-12-06
公開日2010-04-14
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of PP4397 Reveals the Molecular Basis for Different c-di-GMP Binding Modes by Pilz Domain Proteins.
J.Mol.Biol., 398, 2010
3KYG
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BU of 3kyg by Molmil
Crystal structure of VCA0042 (L135R) complexed with c-di-GMP
分子名称: GUANOSINE-5'-MONOPHOSPHATE, Putative uncharacterized protein VCA0042
著者Ryu, K.S, Ko, J, Kim, H, Choi, B.S.
登録日2009-12-06
公開日2010-04-14
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of PP4397 Reveals the Molecular Basis for Different c-di-GMP Binding Modes by Pilz Domain Proteins.
J.Mol.Biol., 398, 2010
1X8D
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BU of 1x8d by Molmil
Crystal structure of E. coli YiiL protein containing L-rhamnose
分子名称: Hypothetical protein yiiL, L-RHAMNOSE
著者Ryu, K.S, Kim, J.I, Cho, S.J, Park, D, Park, C, Lee, J.O, Choi, B.S.
登録日2004-08-18
公開日2005-05-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural Insights into the Monosaccharide Specificity of Escherichia coli Rhamnose Mutarotase
J.Mol.Biol., 349, 2005
3GWJ
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BU of 3gwj by Molmil
Crystal structure of Antheraea pernyi arylphorin
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Arylphorin, FORMIC ACID, ...
著者Ryu, K.S, Lee, J.O, Kwon, T.H, Kim, S.
登録日2009-04-01
公開日2009-05-05
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.43 Å)
主引用文献The presence of monoglucosylated N196-glycan is important for the structural stability of storage protein, arylphorin
Biochem.J., 421, 2009
5YA1
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BU of 5ya1 by Molmil
crystal structure of LsrK-HPr complex with ATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Autoinducer-2 kinase, HEXANE-1,6-DIOL, ...
著者Ryu, K.S, Ha, J.H.
登録日2017-08-29
公開日2018-07-11
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.701 Å)
主引用文献Evidence of link between quorum sensing and sugar metabolism inEscherichia colirevealed via cocrystal structures of LsrK and HPr
Sci Adv, 4, 2018
5YA0
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BU of 5ya0 by Molmil
Crystal structure of LsrK and HPr complex
分子名称: Autoinducer-2 kinase, HEXANE-1,6-DIOL, PHOSPHATE ION, ...
著者Ryu, K.S, Ha, J.H.
登録日2017-08-29
公開日2018-07-11
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.997 Å)
主引用文献Evidence of link between quorum sensing and sugar metabolism inEscherichia colirevealed via cocrystal structures of LsrK and HPr
Sci Adv, 4, 2018
6L5K
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BU of 6l5k by Molmil
ARF5 Aux/IAA17 Complex
分子名称: Auxin response factor 5, Auxin-responsive protein IAA17
著者Ryu, K.S, Suh, J.Y, Cha, S.Y, Kim, Y.I, Park, C.K.
登録日2019-10-24
公開日2020-09-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.91 Å)
主引用文献Determinants of PB1 Domain Interactions in Auxin Response Factor ARF5 and Repressor IAA17.
J.Mol.Biol., 432, 2020
1P1A
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BU of 1p1a by Molmil
NMR structure of ubiquitin-like domain of hHR23B
分子名称: UV excision repair protein RAD23 homolog B
著者Ryu, K.S, Lee, K.J, Bae, S.H, Kim, B.K, Kim, K.A, Choi, B.S.
登録日2003-04-11
公開日2004-07-13
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Binding surface mapping of intra- and interdomain interactions among hHR23B, ubiquitin, and polyubiquitin binding site 2 of S5a
J.Biol.Chem., 278, 2003
4L4Y
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BU of 4l4y by Molmil
Crystal structures of the LsrR proteins complexed with phospho-AI-2 and its two different analogs reveal distinct mechanisms for ligand recognition
分子名称: Transcriptional regulator LsrR
著者Ryu, K.S, Ha, J.H, Eo, Y.
登録日2013-06-10
公開日2013-11-06
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal Structures of the LsrR Proteins Complexed with Phospho-AI-2 and Two Signal-Interrupting Analogues Reveal Distinct Mechanisms for Ligand Recognition.
J.Am.Chem.Soc., 135, 2013
4L51
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BU of 4l51 by Molmil
Crystal structures of the LsrR proteins complexed with phospho-AI-2 and its two different analogs reveal distinct mechanisms for ligand recognition
分子名称: 5-O-phosphono-alpha-D-ribofuranose, Transcriptional regulator LsrR
著者Ryu, K.S, Ha, J.H, Eo, Y.
登録日2013-06-10
公開日2013-11-06
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal Structures of the LsrR Proteins Complexed with Phospho-AI-2 and Two Signal-Interrupting Analogues Reveal Distinct Mechanisms for Ligand Recognition.
J.Am.Chem.Soc., 135, 2013
4L5J
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BU of 4l5j by Molmil
Crystal structures of the LsrR proteins complexed with phospho-AI-2 and its two different analogs reveal distinct mechanisms for ligand recognition
分子名称: 5-O-phosphono-alpha-D-ribofuranose, Transcriptional regulator LsrR
著者Ryu, K.S, Ha, J.H, Eo, Y.
登録日2013-06-11
公開日2013-11-06
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal Structures of the LsrR Proteins Complexed with Phospho-AI-2 and Two Signal-Interrupting Analogues Reveal Distinct Mechanisms for Ligand Recognition.
J.Am.Chem.Soc., 135, 2013
4L5I
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BU of 4l5i by Molmil
Crystal structures of the LsrR proteins complexed with phospho-AI-2 and its two different analogs reveal distinct mechanisms for ligand recognition
分子名称: Transcriptional regulator LsrR
著者Ryu, K.S, Ha, J.H, Eo, Y.
登録日2013-06-11
公開日2013-11-06
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (3.21 Å)
主引用文献Crystal Structures of the LsrR Proteins Complexed with Phospho-AI-2 and Two Signal-Interrupting Analogues Reveal Distinct Mechanisms for Ligand Recognition.
J.Am.Chem.Soc., 135, 2013
4L4Z
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BU of 4l4z by Molmil
Crystal structures of the LsrR proteins complexed with phospho-AI-2 and its two different analogs reveal distinct mechanisms for ligand recognition
分子名称: (2S)-2,3,3-trihydroxy-4-oxopentyl dihydrogen phosphate, Transcriptional regulator LsrR
著者Ryu, K.S, Ha, J.H, Eo, Y.
登録日2013-06-10
公開日2013-11-06
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal Structures of the LsrR Proteins Complexed with Phospho-AI-2 and Two Signal-Interrupting Analogues Reveal Distinct Mechanisms for Ligand Recognition.
J.Am.Chem.Soc., 135, 2013
4L50
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BU of 4l50 by Molmil
Crystal structures of the LsrR proteins complexed with phospho-AI-2 and its two different analogs reveal distinct mechanisms for ligand recognition
分子名称: (2S)-2,3,3-trihydroxy-6-methyl-4-oxoheptyl dihydrogen phosphate, Transcriptional regulator LsrR
著者Ryu, K.S, Ha, J.H, Eo, Y.
登録日2013-06-10
公開日2013-11-06
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal Structures of the LsrR Proteins Complexed with Phospho-AI-2 and Two Signal-Interrupting Analogues Reveal Distinct Mechanisms for Ligand Recognition.
J.Am.Chem.Soc., 135, 2013
7X89
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BU of 7x89 by Molmil
Tid1
分子名称: DnaJ homolog subfamily A member 3, mitochondrial
著者Jang, J, Lee, S.H, Kang, D.H, Sim, D.W, Jo, K.S, Ryu, H, Kim, E.H, Ryu, K.S, Lee, J.H, Kim, J.H, Won, H.S.
登録日2022-03-11
公開日2023-03-22
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural studies on the J-domain and GF-motif of the mitochondrial Hsp40, Tid1
To Be Published
6ILU
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BU of 6ilu by Molmil
Endolysin LysPBC5 CBD
分子名称: 1,2-ETHANEDIOL, Lysin, SULFATE ION
著者Suh, J.Y, Ryu, K.S, Ryu, S, Lee, K.O, Kong, M.S, Bae, J.W, Kim, I.T.
登録日2018-10-19
公開日2019-07-31
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.601 Å)
主引用文献Structural Basis for Cell-Wall Recognition by Bacteriophage PBC5 Endolysin.
Structure, 27, 2019
6M2D
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BU of 6m2d by Molmil
MUL1-RING domain
分子名称: Mitochondrial ubiquitin ligase activator of NFKB 1, SULFATE ION, ZINC ION
著者Lee, S.O, Ryu, K.S, Chi, S.-W.
登録日2020-02-27
公開日2021-04-07
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.795 Å)
主引用文献MUL1-RING recruits the substrate, p53-TAD as a complex with UBE2D2-UB conjugate.
Febs J., 2022
6M2C
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BU of 6m2c by Molmil
Distinct mechanism of MUL1-RING domain simultaneously recruiting E2 enzyme and the substrate p53-TAD domain
分子名称: Mitochondrial ubiquitin ligase activator of NFKB 1, Ubiquitin-conjugating enzyme E2 D2, ZINC ION
著者Lee, S.O, Ryu, K.S, Chi, S.-W.
登録日2020-02-27
公開日2021-04-07
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.702 Å)
主引用文献MUL1-RING recruits the substrate, p53-TAD as a complex with UBE2D2-UB conjugate.
Febs J., 2022
7BOL
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BU of 7bol by Molmil
ubiquitin-conjugating enzyme, Ube2D2
分子名称: Ubiquitin-conjugating enzyme E2 D2
著者Lee, S.O, Ryu, K.S, Chi, S.-W.
登録日2020-03-19
公開日2021-03-24
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.797 Å)
主引用文献MUL1-RING recruits the substrate, p53-TAD as a complex with UBE2D2-UB conjugate.
Febs J., 2022
4EXT
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BU of 4ext by Molmil
Structure of polymerase-interacting domain of human Rev1 in complex with translesional synthesis polymerase zeta
分子名称: DNA repair protein REV1, Mitotic spindle assembly checkpoint protein MAD2B, peptide from DNA polymerase zeta catalytic subunit
著者Liu, D.N, Ryu, K.S, Ko, J.S, Choi, B.S.
登録日2012-05-01
公開日2013-05-08
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Insights into the scaffold mechanism of human Rev1 in translesional synthesis revealed by structural studies on its polymerase-interacting domain
To be Published
2KCC
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BU of 2kcc by Molmil
Solution Structure of biotinoyl domain from human acetyl-CoA carboxylase 2
分子名称: Acetyl-CoA carboxylase 2
著者Lee, C, Cheong, H, Ryu, K, Lee, J, Lee, W, Jeon, Y, Cheong, C.
登録日2008-12-19
公開日2009-02-17
最終更新日2023-09-27
実験手法SOLUTION NMR
主引用文献Biotinoyl domain of human acetyl-CoA carboxylase: Structural insights into the carboxyl transfer mechanism.
Proteins, 72, 2008
2LJP
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BU of 2ljp by Molmil
Backbone 1H, 13C, and 15N Chemical Shift Assignments for E.coli Ribonuclease P protein
分子名称: Ribonuclease P protein component
著者Shin, J, Kim, K, Ryu, K, Han, K, Lee, Y, Choi, B.
登録日2011-09-21
公開日2011-12-07
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural analysis of Escherichia coli C5 protein
To be Published
3IMN
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BU of 3imn by Molmil
Crystal structure of heparin lyase I from Bacteroides thetaiotaomicron
分子名称: CALCIUM ION, Heparin lyase I, SULFATE ION
著者Han, Y.H, Ryu, K.S, Jeon, Y.H.
登録日2009-08-10
公開日2009-09-29
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献Structural snapshots of heparin depolymerization by heparin lyase I
J.Biol.Chem., 284, 2009
3INA
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BU of 3ina by Molmil
Crystal structure of heparin lyase I H151A mutant complexed with a dodecasaccharide heparin
分子名称: 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-3,6-di-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid, CALCIUM ION, Heparin lyase I
著者Han, Y.H, Ryu, K.S, Kim, H.Y, Jeon, Y.H.
登録日2009-08-12
公開日2009-09-29
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural snapshots of heparin depolymerization by heparin lyase I
J.Biol.Chem., 284, 2009

 

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