Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 163 results

3JBD
DownloadVisualize
BU of 3jbd by Molmil
Complex of poliovirus with VHH PVSP6A
Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3, ...
Authors:Strauss, M, Schotte, L, Thys, B, Filman, D.J, Hogle, J.M.
Deposit date:2015-08-26
Release date:2016-01-27
Last modified:2022-12-21
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Five of Five VHHs Neutralizing Poliovirus Bind the Receptor-Binding Site.
J.Virol., 90, 2016
3JBC
DownloadVisualize
BU of 3jbc by Molmil
Complex of Poliovirus with VHH PVSP29F
Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3, ...
Authors:Strauss, M, Schotte, L, Thys, B, Filman, D.J, Hogle, J.M.
Deposit date:2015-08-26
Release date:2016-01-27
Last modified:2022-12-21
Method:ELECTRON MICROSCOPY (5.6 Å)
Cite:Five of Five VHHs Neutralizing Poliovirus Bind the Receptor-Binding Site.
J.Virol., 90, 2016
3JBG
DownloadVisualize
BU of 3jbg by Molmil
Complex of poliovirus with VHH PVSS21E
Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3, ...
Authors:Strauss, M, Schotte, L, Thys, B, Filman, D.J, Hogle, J.M.
Deposit date:2015-08-26
Release date:2016-01-27
Last modified:2022-12-21
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Five of Five VHHs Neutralizing Poliovirus Bind the Receptor-Binding Site.
J.Virol., 90, 2016
3JBE
DownloadVisualize
BU of 3jbe by Molmil
Complex of poliovirus with VHH PVSS8A
Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3, ...
Authors:Strauss, M, Schotte, L, Thys, B, Filman, D.J, Hogle, J.M.
Deposit date:2015-08-26
Release date:2016-01-27
Last modified:2022-12-21
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Five of Five VHHs Neutralizing Poliovirus Bind the Receptor-Binding Site.
J.Virol., 90, 2016
8B5B
DownloadVisualize
BU of 8b5b by Molmil
Human BRD4 bromdomain 1 in complex with a H4 peptide containing acetyl lysine and ApmTri (H4K5acK8ApmTri)
Descriptor: Bromodomain-containing protein 4, DI(HYDROXYETHYL)ETHER, H4K5acK8ApmTri
Authors:Braun, M.B, Bartlick, N, Stehle, T.
Deposit date:2022-09-22
Release date:2023-01-11
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Synthesis, Biochemical Characterization, and Genetic Encoding of a 1,2,4-Triazole Amino Acid as an Acetyllysine Mimic for Bromodomains of the BET Family.
Angew.Chem.Int.Ed.Engl., 62, 2023
8B5C
DownloadVisualize
BU of 8b5c by Molmil
Human BRD4 bromdomain 1 in complex with a H4 peptide containing ApmTri (H4K5/8ApmTri)
Descriptor: Bromodomain-containing protein 4, H4K5/8ApmTri
Authors:Braun, M.B, Bartlick, N, Stehle, T.
Deposit date:2022-09-22
Release date:2023-01-11
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Synthesis, Biochemical Characterization, and Genetic Encoding of a 1,2,4-Triazole Amino Acid as an Acetyllysine Mimic for Bromodomains of the BET Family.
Angew.Chem.Int.Ed.Engl., 62, 2023
5IVN
DownloadVisualize
BU of 5ivn by Molmil
BC2 nanobody in complex with the BC2 peptide tag
Descriptor: BC2-nanobody, Cadherin derived peptide
Authors:Braun, M.B, Stehle, T.
Deposit date:2016-03-21
Release date:2016-04-06
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1 Å)
Cite:Peptides in headlock - a novel high-affinity and versatile peptide-binding nanobody for proteomics and microscopy.
Sci Rep, 6, 2016
4PC8
DownloadVisualize
BU of 4pc8 by Molmil
Structure-based protein engineering efforts on the scaffold of a monomeric triosephosphate isomerase yielding a sugar isomerase
Descriptor: GLYCOLIC ACID, Ma21-TIM
Authors:Krause, M, Neubauer, P, Wierenga, R.K.
Deposit date:2014-04-14
Release date:2015-04-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structures of two monomeric triosephosphate isomerase variants identified via a directed-evolution protocol selecting for L-arabinose isomerase activity.
Acta Crystallogr.,Sect.F, 72, 2016
4PCF
DownloadVisualize
BU of 4pcf by Molmil
Structure-based protein engineering of a monomeric triosephosphate isomerase towards changing substrate specificity
Descriptor: Ma18-TIM
Authors:Krause, M, Neubauer, P, Wierenga, R.K.
Deposit date:2014-04-15
Release date:2015-04-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Crystal structures of two monomeric triosephosphate isomerase variants identified via a directed-evolution protocol selecting for L-arabinose isomerase activity.
Acta Crystallogr.,Sect.F, 72, 2016
2MI6
DownloadVisualize
BU of 2mi6 by Molmil
Solution structure of the carboxy terminal domain of NusG from Mycobacterium tuberculosis
Descriptor: Transcription termination/antitermination protein NusG
Authors:Strauss, M, Schweimer, K, Roesch, P.
Deposit date:2013-12-09
Release date:2014-01-29
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of the carboxy terminal domain of NusG from mycobacterium tuberculosis
To be Published
8FPT
DownloadVisualize
BU of 8fpt by Molmil
STRUCTURE OF ALPHA-SYNUCLEIN FIBRILS DERIVED FROM HUMAN LEWY BODY DEMENTIA TISSUE
Descriptor: Alpha-synuclein
Authors:Barclay, A.M, Dhavale, D.D, Borcik, C.G, Rau, M.J, Basore, K, Milchberg, M.H, Warmuth, O.A, Kotzbauer, P.T, Rienstra, C.M, Schwieters, C.D.
Deposit date:2023-01-05
Release date:2023-02-22
Last modified:2024-05-15
Method:SOLID-STATE NMR
Cite:Structure of alpha-synuclein fibrils derived from human Lewy body dementia tissue.
Biorxiv, 2023
8G3G
DownloadVisualize
BU of 8g3g by Molmil
CryoEM structure of yeast recombination mediator Rad52
Descriptor: DNA repair and recombination protein RAD52
Authors:Deveryshetty, J, Basore, K, Rau, M, Fitzpatrick, J.A.J, Antony, E.
Deposit date:2023-02-07
Release date:2023-11-15
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Yeast Rad52 is a homodecamer and possesses BRCA2-like bipartite Rad51 binding modes.
Nat Commun, 14, 2023
8VUW
DownloadVisualize
BU of 8vuw by Molmil
ELIC5 with cysteamine in 2:1:1 POPC:POPE:POPG nanodisc in open conformation
Descriptor: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, 2-AMINO-ETHANETHIOL, Erwinia chrysanthemi ligand-gated ion channel
Authors:Petroff II, J.T, Deng, Z, Rau, M.J, Fitzpatrick, J.A.J, Yuan, P, Cheng, W.W.L.
Deposit date:2024-01-29
Release date:2024-02-07
Method:ELECTRON MICROSCOPY (3.19 Å)
Cite:Open-channel structure of a pentameric ligand-gated ion channel reveals a mechanism of leaflet-specific phospholipid modulation.
Nat Commun, 13, 2022
8FDG
DownloadVisualize
BU of 8fdg by Molmil
Cryo-EM structure of coagulation factor V short
Descriptor: Coagulation factor V
Authors:Mohammed, B.M, Pelc, L.A, Rau, M.J, Di Cera, E.
Deposit date:2022-12-03
Release date:2023-03-15
Last modified:2023-07-12
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM structure of coagulation factor V short.
Blood, 141, 2023
7S9Z
DownloadVisualize
BU of 7s9z by Molmil
Helicobacter Hepaticus CcsBA Closed Conformation
Descriptor: Cytochrome c biogenesis protein, HEME B/C, PHOSPHATIDYLETHANOLAMINE
Authors:Mendez, D.L, Lowder, E.P, Tillman, D.E, Sutherland, M.C, Collier, A.L, Rau, M.J, Fitzpatrick, J.A, Kranz, R.G.
Deposit date:2021-09-21
Release date:2021-12-22
Last modified:2022-01-12
Method:ELECTRON MICROSCOPY (4.14 Å)
Cite:Cryo-EM of CcsBA reveals the basis for cytochrome c biogenesis and heme transport.
Nat.Chem.Biol., 18, 2022
7S9Y
DownloadVisualize
BU of 7s9y by Molmil
Helicobacter Hepaticus CcsBA Open Conformation
Descriptor: Cytochrome c biogenesis protein, HEME B/C, PHOSPHATIDYLETHANOLAMINE
Authors:Mendez, D.L, Lowder, E.P, Tillman, D.E, Sutherland, M.C, Collier, A.L, Rau, M.J, Fitzpatrick, J.A, Kranz, R.G.
Deposit date:2021-09-21
Release date:2021-12-22
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.56 Å)
Cite:Cryo-EM of CcsBA reveals the basis for cytochrome c biogenesis and heme transport.
Nat.Chem.Biol., 18, 2022
8D66
DownloadVisualize
BU of 8d66 by Molmil
ELIC with cysteamine in 2:1:1 POPC:POPE:POPG nanodisc
Descriptor: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, 2-AMINO-ETHANETHIOL, Erwinia ligand-gated ion channel
Authors:Petroff II, J.T, Deng, Z, Rau, M.J, Fitzpatrick, J.A.J, Yuan, P, Cheng, W.W.L.
Deposit date:2022-06-06
Release date:2022-11-23
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.14 Å)
Cite:Open-channel structure of a pentameric ligand-gated ion channel reveals a mechanism of leaflet-specific phospholipid modulation.
Nat Commun, 13, 2022
8D64
DownloadVisualize
BU of 8d64 by Molmil
ELIC with cysteamine in POPC nanodisc
Descriptor: 2-AMINO-ETHANETHIOL, Erwinia ligand-gated ion channel
Authors:Petroff II, J.T, Deng, Z, Rau, M.J, Fitzpatrick, J.A.J, Yuan, P, Cheng, W.W.L.
Deposit date:2022-06-06
Release date:2022-11-23
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.14 Å)
Cite:Open-channel structure of a pentameric ligand-gated ion channel reveals a mechanism of leaflet-specific phospholipid modulation.
Nat Commun, 13, 2022
8D67
DownloadVisualize
BU of 8d67 by Molmil
ELIC3 with cysteamine in 2:1:1 POPC:POPE:POPG nanodisc
Descriptor: 2-AMINO-ETHANETHIOL, Erwinia ligand-gated ion channel
Authors:Petroff II, J.T, Deng, Z, Rau, M.J, Fitzpatrick, J.A.J, Yuan, P, Cheng, W.W.L.
Deposit date:2022-06-06
Release date:2022-11-23
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Open-channel structure of a pentameric ligand-gated ion channel reveals a mechanism of leaflet-specific phospholipid modulation.
Nat Commun, 13, 2022
8D65
DownloadVisualize
BU of 8d65 by Molmil
ELIC apo in 2:1:1 POPC:POPE:POPG nanodisc
Descriptor: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, Erwinia ligand-gated ion channel
Authors:Petroff II, J.T, Deng, Z, Rau, M.J, Fitzpatrick, J.A.J, Yuan, P, Cheng, W.W.L.
Deposit date:2022-06-06
Release date:2022-11-23
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.47 Å)
Cite:Open-channel structure of a pentameric ligand-gated ion channel reveals a mechanism of leaflet-specific phospholipid modulation.
Nat Commun, 13, 2022
8D63
DownloadVisualize
BU of 8d63 by Molmil
ELIC apo in POPC nanodisc
Descriptor: 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, Erwinia ligand-gated ion channel
Authors:Petroff II, J.T, Deng, Z, Rau, M.J, Fitzpatrick, J.A.J, Yuan, P, Cheng, W.W.L.
Deposit date:2022-06-06
Release date:2022-11-23
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.14 Å)
Cite:Open-channel structure of a pentameric ligand-gated ion channel reveals a mechanism of leaflet-specific phospholipid modulation.
Nat Commun, 13, 2022
6VPS
DownloadVisualize
BU of 6vps by Molmil
Cryo-EM structure of the amyloid core of Drosophila Orb2 isolated from head
Descriptor: Translational regulator orb2
Authors:Hervas, R, Rau, M.J, Park, Y, Zhang, W, Murzin, A.G, Fitzpatrick, J.A.J, Scheres, S.H.W, Si, K.
Deposit date:2020-02-04
Release date:2020-03-18
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Cryo-EM structure of a neuronal functional amyloid implicated in memory persistence in Drosophila
Science, 367, 2020
8A92
DownloadVisualize
BU of 8a92 by Molmil
p53-Y220C Core Domain in Complex with a Bromo-trifluoro-pyrazole-amine
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 4-bromanyl-5-(trifluoromethyl)-1H-pyrazol-3-amine, Cellular tumor antigen p53, ...
Authors:Stahlecker, J, Braun, M.B, Stehle, T, Boeckler, F.M.
Deposit date:2022-06-27
Release date:2022-11-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Revisiting a challenging p53 binding site: a diversity-optimized HEFLib reveals diverse binding modes in T-p53C-Y220C.
Rsc Med Chem, 13, 2022
2HUR
DownloadVisualize
BU of 2hur by Molmil
Escherichia coli nucleoside diphosphate kinase
Descriptor: NUCLEOSIDE DIPHOSPHATE KINASE, SULFATE ION
Authors:Moynie, L, Giraud, M.-F, Georgescauld, F, Lascu, I, Dautant, A.
Deposit date:2006-07-27
Release date:2007-04-10
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:The structure of the Escherichia coli nucleoside diphosphate kinase reveals a new quaternary architecture for this enzyme family
Proteins, 67, 2007
5C8B
DownloadVisualize
BU of 5c8b by Molmil
Structural insights into the redesign of a sucrose phosphorylase by induced loop repositioning
Descriptor: Sucrose phosphorylase, beta-D-glucopyranose
Authors:Grimm, C, Kraus, M.
Deposit date:2015-06-25
Release date:2016-01-20
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Redesign of the Active Site of Sucrose Phosphorylase through a Clash-Induced Cascade of Loop Shifts.
Chembiochem, 17, 2016

221371

건을2024-06-19부터공개중

PDB statisticsPDBj update infoContact PDBjnumon