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PDB: 68 件

8C7A
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Slow cation movements within tetramolecular G-quadruplex: vacant cation binding sites in addition to all syn G-quartet
分子名称: DNA (5'-D(*GP*GP*GP*GP*CP*C)-3')
著者Wang, B, Zalar, M, Plavec, J, Sket, P.
登録日2023-01-14
公開日2023-11-22
実験手法SOLUTION NMR
主引用文献Insight into Tetramolecular DNA G-Quadruplexes Associated with ALS and FTLD: Cation Interactions and Formation of Higher-Ordered Structure.
Int J Mol Sci, 24, 2023
5L6R
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BU of 5l6r by Molmil
PrP226* - Solution-state NMR structure of truncated human prion protein
分子名称: Major prion protein
著者Kovac, V, Zupancic, B, Ilc, G, Curin Serbec, V, Plavec, J.
登録日2016-05-31
公開日2016-10-05
最終更新日2024-10-16
実験手法SOLUTION NMR
主引用文献Truncated prion protein PrP226* - A structural view on its role in amyloid disease.
Biochem. Biophys. Res. Commun., 484, 2017
6GZN
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BU of 6gzn by Molmil
Adenine-driven structural switch from two- to three-quartet DNA G-quadruplex
分子名称: DNA (5'-D(*GP*GP*GP*TP*AP*GP*GP*GP*AP*GP*CP*GP*GP*GP*AP*GP*AP*GP*GP*G)-3')
著者Lenarcic Zivkovic, M, Rozman, J, Plavec, J.
登録日2018-07-04
公開日2018-09-26
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Adenine-Driven Structural Switch from a Two- to Three-Quartet DNA G-Quadruplex.
Angew. Chem. Int. Ed. Engl., 57, 2018
6ZX7
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Antiparallel basket-type G-quadruplex DNA structure formed in human Bcl-2 promoter
分子名称: bcl2ex
著者Bielskute, S, Plavec, J, Podbevsek, P.
登録日2020-07-29
公開日2021-03-10
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Oxidative lesions modulate G-quadruplex stability and structure in the human BCL2 promoter.
Nucleic Acids Res., 49, 2021
6ZX6
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Antiparallel basket-type G-quadruplex DNA structure formed in human Bcl-2 promoter containing 8-oxoG
分子名称: bcl2ex-oxoG19
著者Bielskute, S, Plavec, J, Podbevsek, P.
登録日2020-07-29
公開日2021-03-10
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Oxidative lesions modulate G-quadruplex stability and structure in the human BCL2 promoter.
Nucleic Acids Res., 49, 2021
7A3Y
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RNA duplex with a cytosine bulge in complex with berberine
分子名称: BERBERINE, RNA-A chain A, RNA-A chain B
著者Podbevsek, P, Plavec, J.
登録日2020-08-19
公開日2021-03-10
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Interaction between berberine and RNA for the exploration of phytochemicals role
Nucleic Acids Res., 2021
5LQG
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A two-quartet G-quadruplex formed by human telomere in KCl solution at neutral pH
分子名称: DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*G)-3')
著者Galer, P, Wang, B, Sket, P, Plavec, J.
登録日2016-08-17
公開日2018-06-13
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Reversible pH Switch of Two-Quartet G-Quadruplexes Formed by Human Telomere.
Angew.Chem.Int.Ed.Engl., 55, 2016
5M2L
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Structure of DNA tetrameric AGCGA-quadruplex adopted by 15-mer d(GCGAGGGAGCGAGGG), VK34, oligonucleotide found in regulatory region of the PLEKHG3 human gene
分子名称: DNA (5'-D(*GP*CP*GP*AP*GP*GP*GP*AP*GP*CP*GP*AP*GP*GP*G)-3')
著者Kocman, V, Plavec, J.
登録日2016-10-13
公開日2017-05-31
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Tetrahelical structural family adopted by AGCGA-rich regulatory DNA regions.
Nat Commun, 8, 2017
5LQH
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A two-quartet G-quadruplex formed by human telomere in KCl solution at pH 5.0
分子名称: DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*G)-3')
著者Galer, P, Wang, B, Sket, P, Plavec, J.
登録日2016-08-17
公開日2018-01-17
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Reversible pH Switch of Two-Quartet G-Quadruplexes Formed by Human Telomere.
Angew.Chem.Int.Ed.Engl., 55, 2016
6R8E
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SC14 G-hairpin
分子名称: DNA (5'-D(*GP*TP*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*GP*T)-3')
著者Lenarcic Zivkovic, M, Trantirek, L, Plavec, J.
登録日2019-04-01
公開日2021-02-03
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Insight into formation propensity of pseudocircular DNA G-hairpins.
Nucleic Acids Res., 49, 2021
6FNV
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Solution structure of mule deer prion protein with polymorphism S138
分子名称: Major prion protein
著者Slapsak, U, Ilc, G, Plavec, J.
登録日2018-02-05
公開日2019-08-28
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Solution structure of mule deer prion protein with polymorphism S138
To Be Published
6SX6
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Guanine-rich oligonucleotide with 5'-GC end form G-quadruplex with A(GGGG)A hexad, GCGC- and G-quartets and two symmetric GG and AA base pairs
分子名称: GCn
著者Pavc, D, Wang, B, Spindler, L, Drevensek-Olenik, I, Plavec, J, Sket, P.
登録日2019-09-25
公開日2020-07-22
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献GC ends control topology of DNA G-quadruplexes and their cation-dependent assembly.
Nucleic Acids Res., 48, 2020
6SYK
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Guanine-rich oligonucleotide with 5'- and 3'-GC ends form G-quadruplex with A(GGGG)A hexad, GCGC- and G-quartets and two symmetric GG and AA base pair
分子名称: GCnCG
著者Pavc, D, Wang, B, Spindler, L, Drevensek-Olenik, I, Plavec, J, Sket, P.
登録日2019-09-30
公開日2020-07-29
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献GC ends control topology of DNA G-quadruplexes and their cation-dependent assembly.
Nucleic Acids Res., 48, 2020
6GH0
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Two-quartet kit* G-quadruplex is formed via double-stranded pre-folded structure
分子名称: DNA (5'-D(*GP*GP*CP*GP*AP*GP*GP*AP*GP*GP*GP*GP*CP*GP*TP*GP*GP*CP*CP*GP*GP*C)-3')
著者Kotar, A, Rigo, R, Sissi, C, Plavec, J.
登録日2018-05-04
公開日2019-01-09
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Two-quartet kit* G-quadruplex is formed via double-stranded pre-folded structure.
Nucleic Acids Res., 47, 2019
6SX3
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Intercalation of heterocyclic ligand between quartets in G-rich tetrahelical structure
分子名称: VK2, ~{N}2,~{N}6-bis(1-methylquinolin-1-ium-3-yl)pyridine-2,6-dicarboxamide
著者Kotar, A, Kocman, V, Plavec, J.
登録日2019-09-24
公開日2019-12-11
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Intercalation of a Heterocyclic Ligand between Quartets in a G-Rich Tetrahelical Structure.
Chemistry, 26, 2020
5M1W
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BU of 5m1w by Molmil
Structure of a stable G-hairpin
分子名称: DNA (5'-D(*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*G)-3')
著者Gajarsky, M, Zivkovic, M.L, Stadlbauer, P, Pagano, B, Fiala, R, Amato, J, Tomaska, L, Sponer, J, Plavec, J, Trantirek, L.
登録日2016-10-11
公開日2017-03-01
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure of a Stable G-Hairpin.
J. Am. Chem. Soc., 139, 2017
5LKN
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BU of 5lkn by Molmil
NMR solution structure of human FNIII domain 2 of NCAM
分子名称: Neural cell adhesion molecule 1
著者Slapsak, U, Salzano, G, Amin, L, Abskharon, R.N.N, Ilc, G, Zupancic, B, Biljan, I, Plavec, J, Giachin, G, Legname, G.
登録日2016-07-22
公開日2016-09-14
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献The N Terminus of the Prion Protein Mediates Functional Interactions with the Neuronal Cell Adhesion Molecule (NCAM) Fibronectin Domain.
J.Biol.Chem., 291, 2016
5LIG
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BU of 5lig by Molmil
G-Quadruplex formed at the 5'-end of NHEIII_1 Element in human c-MYC promoter bound to triangulenium based fluorescence probe DAOTA-M2
分子名称: 8,12-bis(2-morpholinoethyl)-8H-benzo[ij]xantheno[1,9,8-cdef][2,7]naphthyridin-12-iumhexafluorophosphate, DNA (5'-D(*TP*AP*GP*GP*GP*AP*GP*GP*GP*TP*AP*GP*GP*GP*AP*GP*GP*GP*T)-3')
著者Kotar, A, Wang, B, Shivalingam, A, Gonzalez-Garcia, J, Vilar, R, Plavec, J.
登録日2016-07-14
公開日2016-09-14
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献NMR Structure of a Triangulenium-Based Long-Lived Fluorescence Probe Bound to a G-Quadruplex.
Angew.Chem.Int.Ed.Engl., 55, 2016
5M1L
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Structure of DNA AGCGA-quadruplex adopted by 15-mer d(GCGAGGGAGCGAGGG), VK34, oligonucleotide found in regulatory region of the PLEKHG3 human gene
分子名称: DNA (5'-D(*GP*CP*GP*AP*GP*GP*GP*AP*GP*CP*GP*AP*GP*GP*G)-3')
著者Kocman, V, Plavec, J.
登録日2016-10-09
公開日2017-05-31
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Tetrahelical structural family adopted by AGCGA-rich regulatory DNA regions.
Nat Commun, 8, 2017
5MTA
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BU of 5mta by Molmil
G-quadruplex formed within promoters of Plasmodium falciparum B var genes
分子名称: UpsB-Q-1, DNA (34-MER)
著者Juribasic Kulcsar, M, Plavec, J.
登録日2017-01-09
公開日2018-02-28
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Stabilizing interactions in long-loop G-quadruplex formed within promoters of Plasmodium falciparum B var genes
To Be Published
5MTG
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G-quadruplex formed within promoters of Plasmodium falciparum B var genes - form I
分子名称: UpsB-Q-1 DNA (34-MER)
著者Juribasic Kulcsar, M, Plavec, J.
登録日2017-01-09
公開日2018-02-28
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Stabilizing interactions in long-loop G-quadruplex formed within promoters of Plasmodium falciparum B var genes
To Be Published
5LSN
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SINEB2 element of the long non-coding RNA activator of translation AS Uchl1
分子名称: RNA (29-MER)
著者Podbevsek, P, Plavec, J.
登録日2016-09-05
公開日2017-09-20
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural determinants of the SINE B2 element embedded in the long non-coding RNA activator of translation AS Uchl1.
Sci Rep, 8, 2018
5M4W
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Structure of DNA AGCGA-quadruplex adopted by 15-mer oligonucleotide found in regulatory region of the PLEKHG3 human gene with G11 to I11 mutation, d(GCGAGGGAGCIAGGG),VK34_I11
分子名称: DNA (5'-D(*GP*CP*GP*AP*GP*GP*GP*AP*GP*CP*IP*AP*GP*GP*G)-3')
著者Kocman, V, Plavec, J.
登録日2016-10-19
公開日2017-05-31
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Tetrahelical structural family adopted by AGCGA-rich regulatory DNA regions.
Nat Commun, 8, 2017
5O4D
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G-quadruplex of Human papillomavirus type 52
分子名称: DNA (5'-D(*GP*GP*GP*TP*AP*GP*GP*GP*CP*AP*GP*GP*GP*GP*AP*CP*AP*CP*AP*GP*GP*GP*T)-3')
著者Marusic, M, Plavec, J.
登録日2017-05-29
公開日2018-06-13
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Towards Understanding of Polymorphism of the G-rich Region of Human Papillomavirus Type 52.
Molecules, 24, 2019
2LED
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Unique structural features of interconverting monomeric and dimeric G-quadruplexes adopted by a sequence from intron of N-myc gene
分子名称: DNA (5'-D(*TP*AP*GP*GP*GP*CP*GP*GP*GP*AP*GP*GP*GP*AP*GP*GP*GP*AP*A)-3')
著者Trajkovski, M, Plavec, J, Webba da Silva, M.
登録日2011-06-15
公開日2012-03-14
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Unique Structural Features of Interconverting Monomeric and Dimeric G-Quadruplexes Adopted by a Sequence from the Intron of the N-myc Gene.
J.Am.Chem.Soc., 134, 2012

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