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PDB: 46375 results

2I7D
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BU of 2i7d by Molmil
Structure of Human cytosolic deoxyribonucleotidase in complex with deoxyuridine, AlF4 and Mg2+
Descriptor: 2'-DEOXYURIDINE, 5'(3')-deoxyribonucleotidase, cytosolic type, ...
Authors:Rinaldo-Matthis, A, Wallden, K, Nordlund, P.
Deposit date:2006-08-30
Release date:2007-10-30
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structures of Human and Murine cytosolic deoxyribonucleotidase: Insights into substrate specificity and catalysis
To be Published
4DKQ
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BU of 4dkq by Molmil
Crystal structure of clade A/E 93TH057 HIV-1 gp120 core in complex with DMJ-I-228
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, N-[(1S,2S)-2-carbamimidamido-2,3-dihydro-1H-inden-1-yl]-N'-(4-chloro-3-fluorophenyl)ethanediamide, ...
Authors:Kwon, Y.D, LaLonde, J.M, Jones, D.M, Sun, A.W, Courter, J.R, Soeta, T, Kobayashi, T, Princiotto, A.M, Wu, X, Mascola, J, Schon, A, Freire, E, Sodroski, J, Madani, N, Smith III, A.B, Kwong, P.D.
Deposit date:2012-02-03
Release date:2012-05-02
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.888 Å)
Cite:Structure-Based Design, Synthesis, and Characterization of Dual Hotspot Small-Molecule HIV-1 Entry Inhibitors.
J.Med.Chem., 55, 2012
4DYN
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BU of 4dyn by Molmil
Crystal Structure of WSN/A Influenza Nucleoprotein with BMS-885838 Ligand Bound
Descriptor: N-[4-chloranyl-5-[4-[[3-(2-methoxyphenyl)-5-methyl-1,2-oxazol-4-yl]carbonyl]piperazin-1-yl]-2-nitro-phenyl]pyridine-2-carboxamide, Nucleocapsid protein
Authors:Lewis, H.A, Baldwin, E.T, Steinbacher, S, Maskos, K, Mortl, M, Kiefersauer, R, Edavettal, S, McDonnell, P.A, Pearce, B.C, Langley, D.R.
Deposit date:2012-02-29
Release date:2013-03-06
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:To be determined
To be Published
1VRS
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BU of 1vrs by Molmil
Crystal structure of the disulfide-linked complex between the N-terminal and C-terminal domain of the electron transfer catalyst DsbD
Descriptor: Thiol:disulfide interchange protein dsbD
Authors:Rozhkova, A, Stirnimann, C.U, Frei, P, Grauschopf, U, Brunisholz, R, Gruetter, M.G, Capitani, G, Glockshuber, R.
Deposit date:2005-06-17
Release date:2005-07-12
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structural basis and kinetics of inter- and intramolecular disulfide exchange in the redox catalyst DsbD
Embo J., 23, 2004
4DOL
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BU of 4dol by Molmil
Crystal structure of Arabidopsis thaliana fatty-acid binding protein At1g53520 (AtFAP3)
Descriptor: At1g53520, PALMITIC ACID
Authors:Noel, J.P, Louie, G.V, Bowman, M.E.
Deposit date:2012-02-09
Release date:2012-05-09
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Evolution of the chalcone-isomerase fold from fatty-acid binding to stereospecific catalysis.
Nature, 485, 2012
3EC2
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BU of 3ec2 by Molmil
Crystal structure of the DnaC helicase loader
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA replication protein DnaC, MAGNESIUM ION
Authors:Mott, M.L, Erzberger, J.P, Coons, M.M, Berger, J.M.
Deposit date:2008-08-28
Release date:2008-11-25
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural synergy and molecular crosstalk between bacterial helicase loaders and replication initiators.
Cell(Cambridge,Mass.), 135, 2008
3ECC
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BU of 3ecc by Molmil
Crystal structure of the DnaC helicase loader in complex with ADP-BeF3
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA replication protein DnaC, ...
Authors:Mott, M.L, Erzberger, J.P, Coons, M.M, Berger, J.
Deposit date:2008-08-29
Release date:2008-11-25
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural synergy and molecular crosstalk between bacterial helicase loaders and replication initiators.
Cell(Cambridge,Mass.), 135, 2008
4DW6
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BU of 4dw6 by Molmil
Novel N-phenyl-phenoxyacetamide derivatives as potential EthR inhibitors and ethionamide boosters. Discovery and optimization using High-Throughput Synthesis.
Descriptor: AMMONIUM ION, GLYCEROL, HTH-type transcriptional regulator EthR, ...
Authors:Flipo, M, Willand, N, Lecat-Guillet, N, Hounsou, C, Desroses, M, Leroux, F, Lens, Z, Villeret, V, Wohlkonig, A, Wintjens, R, Christophe, T, Jeon, H.K, Locht, C, Brodin, P, Baulard, A.R, Deprez, B.
Deposit date:2012-02-24
Release date:2013-03-27
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Discovery of novel N-phenylphenoxyacetamide derivatives as EthR inhibitors and ethionamide boosters by combining high-throughput screening and synthesis.
J.Med.Chem., 55, 2012
4WVP
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BU of 4wvp by Molmil
Crystal structure of an activity-based probe HNE complex
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, BTN-3V3-NLB-OMT-OIC-3V2, ...
Authors:Lechtenberg, B.C, Kasperkiewicz, P, Robinson, H.R, Drag, M, Riedl, S.J.
Deposit date:2014-11-06
Release date:2015-02-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:The Elastase-PK101 Structure: Mechanism of an Ultrasensitive Activity-based Probe Revealed.
Acs Chem.Biol., 10, 2015
2H9N
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BU of 2h9n by Molmil
WDR5 in complex with monomethylated H3K4 peptide
Descriptor: H3 histone, WD-repeat protein 5
Authors:Min, J.R, Schuetz, A, Allali-Hassani, A, Martin, F, Loppnau, P, Vedadi, M, Weigelt, J, Sundstrom, M, Edwards, A.M, Arrowsmith, C.H, Bochkarev, A, Plotnikov, A.N, Structural Genomics Consortium (SGC)
Deposit date:2006-06-10
Release date:2006-08-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for molecular recognition and presentation of histone H3 By WDR5.
Embo J., 25, 2006
3E29
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BU of 3e29 by Molmil
X-Ray structure of the protein Q7WE92_BORBR from thioesterase superfamily. Northeast Structural Genomics Consortium Target BoR214A.
Descriptor: uncharacterized protein Q7WE92_BORBR
Authors:Kuzin, A.P, Chen, Y, Setharaman, J, Wang, D, Mao, L, Foote, E.L, Xiao, R, Nair, R, Everett, J.K, Acton, T.B, Rost, B, Montelione, G.T, Tong, L, Hunt, J, Northeast Structural Genomics Consortium (NESG)
Deposit date:2008-08-05
Release date:2008-09-30
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:X-Ray structure of the protein Q7WE92_BORBR from thioesterase superfamily. Northeast Structural Genomics Consortium Target BoR214A.
To be Published
2HB5
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BU of 2hb5 by Molmil
Crystal Structure of the Moloney Murine Leukemia Virus RNase H Domain
Descriptor: MAGNESIUM ION, Reverse transcriptase/ribonuclease H, SULFATE ION
Authors:Lim, D, Gregorio, G.G, Bingman, C.A, Martinez-Hackert, E, Hendrickson, W.A, Goff, S.P.
Deposit date:2006-06-13
Release date:2006-08-29
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Crystal Structure of the Moloney Murine Leukemia Virus RNase H Domain.
J.Virol., 80, 2006
8H0Z
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BU of 8h0z by Molmil
Structure of SARS-CoV-1 Spike Protein with Engineered x1 Disulfide (S370C and D967C), Locked-122 Conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BILIVERDINE IX ALPHA, ...
Authors:Zhang, X, Li, Z, Liu, Y, Wang, J, Fu, L, Wang, P, He, J, Xiong, X.
Deposit date:2022-09-30
Release date:2022-11-09
Last modified:2023-07-19
Method:ELECTRON MICROSCOPY (2.99 Å)
Cite:Disulfide stabilization reveals conserved dynamic features between SARS-CoV-1 and SARS-CoV-2 spikes.
Life Sci Alliance, 6, 2023
8BN1
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BU of 8bn1 by Molmil
The structures of Ace2 in complex with bicyclic peptide inhibitor
Descriptor: 1-[3,5-bis(3-bromanylpropanoyl)-1,3,5-triazinan-1-yl]-3-bromanyl-propan-1-one, ALA-CYS-VAL-ARG-SER-4PH-CYS-SER-SER-LEU-LEU-PRO-ARG-ILE-HIS-CYS-ALA-NH2, Processed angiotensin-converting enzyme 2, ...
Authors:Brear, P, Lulla, A, Harman, M, Dods, R, Chen, L, Bezerra, G, Demydchuk, Y, Stanway, S, Hyvonen, M.
Deposit date:2022-11-11
Release date:2023-09-20
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Structure-Guided Chemical Optimization of Bicyclic Peptide ( Bicycle ) Inhibitors of Angiotensin-Converting Enzyme 2.
J.Med.Chem., 66, 2023
3EIH
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BU of 3eih by Molmil
Crystal structure of S.cerevisiae Vps4 in the presence of ATPgammaS
Descriptor: 1,2-ETHANEDIOL, MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
Authors:Gonciarz, M.D, Whitby, F.G, Eckert, D.M, Kieffer, C, Heroux, A, Sundquist, W.I, Hill, C.P.
Deposit date:2008-09-15
Release date:2008-09-30
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Biochemical and structural studies of yeast vps4 oligomerization.
J.Mol.Biol., 384, 2008
8BJH
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BU of 8bjh by Molmil
chimera of the inactive ExoY Nucleotidyl Cyclase domain from Vibrio nigripulchritudo MARTX toxin, with the double mutation K3528M and K3535I, fused to a proline-Rich-Domain (PRD) and profilin, bound to Latrunculin B-ADP-Mg-actin
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ADENOSINE-5'-DIPHOSPHATE, Actin, ...
Authors:Teixeira-Nunes, M, Renault, L, Retailleau, P.
Deposit date:2022-11-04
Release date:2023-09-20
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Functional and structural insights into the multi-step activation and catalytic mechanism of bacterial ExoY nucleotidyl cyclase toxins bound to actin-profilin.
Plos Pathog., 19, 2023
4DFU
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BU of 4dfu by Molmil
Inhibition of an antibiotic resistance enzyme: crystal structure of aminoglycoside phosphotransferase APH(2")-ID/APH(2")-IVA in complex with kanamycin inhibited with quercetin
Descriptor: 3,5,7,3',4'-PENTAHYDROXYFLAVONE, APH(2")-Id, CHLORIDE ION, ...
Authors:Stogios, P.J, Minasov, G, Dong, A, Evdokimova, E, Egorova, E, Di Leo, R, Li, H, Shakya, T, Wright, G.D, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2012-01-24
Release date:2012-02-08
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:A small molecule discrimination map of the antibiotic resistance kinome.
Chem.Biol., 18, 2011
8BJI
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BU of 8bji by Molmil
chimera of ExoY Nucleotidyl Cyclase domain from Vibrio nigripulchritudo fused to a proline-Rich-Domain (PRD) and profilin, bound to ADP-Mg-actin and a sulfate ion
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ADENOSINE-5'-DIPHOSPHATE, Actin, ...
Authors:Teixeira-Nunes, M, Renault, L, Retailleau, P.
Deposit date:2022-11-04
Release date:2023-09-20
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Functional and structural insights into the multi-step activation and catalytic mechanism of bacterial ExoY nucleotidyl cyclase toxins bound to actin-profilin.
Plos Pathog., 19, 2023
8BR1
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BU of 8br1 by Molmil
ExoY Nucleotidyl Cyclase domain from Vibrio nigripulchritudo MARTX toxin, bound to Latrunculin-B-ATP-Mg-actin, and 3'-DEOXYADENOSINE-5'-TRIPHOSPHATE and 2 Mg ions
Descriptor: 3'-DEOXYADENOSINE-5'-TRIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Actin, ...
Authors:Teixeira-Nunes, M, Renault, L, Retailleau, P.
Deposit date:2022-11-22
Release date:2023-09-20
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.044 Å)
Cite:Functional and structural insights into the multi-step activation and catalytic mechanism of bacterial ExoY nucleotidyl cyclase toxins bound to actin-profilin.
Plos Pathog., 19, 2023
4DIL
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BU of 4dil by Molmil
Flavo Di-iron protein H90N mutant from Thermotoga maritima
Descriptor: CHLORIDE ION, FLAVOPROTEIN, MU-OXO-DIIRON
Authors:Fang, H, Caranto, J.D, Taylor, A.B, Hart, P.J, Kurtz, D.M.
Deposit date:2012-01-31
Release date:2012-10-17
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Histidine ligand variants of a flavo-diiron protein: effects on structure and activities.
J.Biol.Inorg.Chem., 17, 2012
8BO1
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BU of 8bo1 by Molmil
ExoY Nucleotidyl Cyclase domain from Vibrio nigripulchritudo MARTX toxin, bound to Latrunculin-B-ATP-Mg-actin, and 3'-DEOXYADENOSINE-5'-TRIPHOSPHATE and 2 Mg ions
Descriptor: 3'-DEOXYADENOSINE-5'-TRIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, AZIDE ION, ...
Authors:Teixeira-Nunes, M, Renault, L, Retailleau, P.
Deposit date:2022-11-14
Release date:2023-09-20
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.501 Å)
Cite:Functional and structural insights into the multi-step activation and catalytic mechanism of bacterial ExoY nucleotidyl cyclase toxins bound to actin-profilin.
Plos Pathog., 19, 2023
2H6D
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BU of 2h6d by Molmil
Protein Kinase Domain of the Human 5'-AMP-activated protein kinase catalytic subunit alpha-2 (AMPK alpha-2 chain)
Descriptor: 5'-AMP-activated protein kinase catalytic subunit alpha-2
Authors:Littler, D.R, Walker, J.R, Wybenga-Groot, L, Newman, E.M, Butler-Cole, C, Mackenzie, F, Finerty, P.J, Weigelt, J, Sundstrom, M, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2006-05-31
Release date:2006-06-27
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:A conserved mechanism of autoinhibition for the AMPK kinase domain: ATP-binding site and catalytic loop refolding as a means of regulation.
Acta Crystallogr.,Sect.F, 66, 2010
4DJA
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BU of 4dja by Molmil
Crystal structure of a prokaryotic (6-4) photolyase PhrB from Agrobacterium Tumefaciens with an Fe-S cluster and a 6,7-dimethyl-8-ribityllumazine antenna chromophore at 1.45A resolution
Descriptor: 1-deoxy-1-(6,7-dimethyl-2,4-dioxo-3,4-dihydropteridin-8(2H)-yl)-D-ribitol, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Scheerer, P, Zhang, F, Oberpichler, I, Lamparter, T, Krauss, N.
Deposit date:2012-02-01
Release date:2013-04-17
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of a prokaryotic (6-4) photolyase with an Fe-S cluster and a 6,7-dimethyl-8-ribityllumazine antenna chromophore.
Proc.Natl.Acad.Sci.USA, 110, 2013
3DSK
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BU of 3dsk by Molmil
Crystal Structure of Arabidopsis thaliana Allene Oxide Synthase variant (F137L) (At-AOS(F137L), Cytochrome P450 74A, CYP74A) Complexed with 12R,13S-Vernolic Acid at 1.55 A Resolution
Descriptor: (9Z)-11-[(2R,3S)-3-pentyloxiran-2-yl]undec-9-enoic acid, Cytochrome P450 74A, chloroplast, ...
Authors:Lee, D.S, Nioche, P, Raman, C.S.
Deposit date:2008-07-12
Release date:2008-08-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural insights into the evolutionary paths of oxylipin biosynthetic enzymes
Nature, 455, 2008
2H6L
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BU of 2h6l by Molmil
X-Ray Crystal Structure of the Metal-containing Protein AF0104 from Archaeoglobus fulgidus. Northeast Structural Genomics Consortium Target GR103.
Descriptor: ACETIC ACID, Hypothetical protein, ZINC ION
Authors:Kuzin, A.P, Abashidze, M, Fang, Y, Chen, C, Cunningham, K, Conover, K, Ma, L.C, Xiao, R, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2006-05-31
Release date:2006-07-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Three dimensional structure of the hypothetical protein AF0104 at the 2.0 A resolution.
To be Published

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