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PDB: 46375 results

4MEO
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BU of 4meo by Molmil
Crystal Structure of the first bromodomain of human BRD4 in complex with a 2-methyl-quinoline ligand
Descriptor: 1,2-ETHANEDIOL, Bromodomain-containing protein 4, DIMETHYL SULFOXIDE, ...
Authors:Filippakopoulos, P, Picaud, S, Felletar, I, Martin, S, Fedorov, O, Vidler, L.R, Brown, N, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Weigelt, J, Bountra, C, Hoelder, S, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2013-08-27
Release date:2013-09-25
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Discovery of Novel Small-Molecule Inhibitors of BRD4 Using Structure-Based Virtual Screening.
J.Med.Chem., 56, 2013
1D1X
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BU of 1d1x by Molmil
BOVINE ENDOTHELIAL NITRIC OXIDE SYNTHASE HEME DOMAIN COMPLEXED WITH 1,4-PBITU (H4B BOUND)
Descriptor: 2-{2-[4-(2-CARBAMIMIDOYLSULFANYL-ETHYL)-PHENYL]-ETHYL}-ISOTHIOUREA, 5,6,7,8-TETRAHYDROBIOPTERIN, ACETATE ION, ...
Authors:Raman, C.S, Li, H, Martasek, P, Southan, G.J, Masters, B.S.S, Poulos, T.L.
Deposit date:1999-09-21
Release date:2001-07-25
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Implications for isoform-selective inhibitor design derived from the binding mode of bulky isothioureas to the heme domain of endothelial nitric-oxide synthase.
J.Biol.Chem., 276, 2001
6Y0J
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BU of 6y0j by Molmil
Cytochrome c in complex with phosphonato-calix[6]arene and sulfonato-calix[8]arene
Descriptor: Cytochrome c iso-1, HEME C, phosphonato-calix[6]arene, ...
Authors:Engilberge, S, Rennie, M.L, Crowley, P.B.
Deposit date:2020-02-07
Release date:2021-02-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Protein-macrocycle framework engineering: supramolecular copolymerisation with two disparate calixarenes
Supramolecular Chemistry, 2021
6TI3
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BU of 6ti3 by Molmil
Apo-SHMT from Streptococcus thermophilus Tyr55Ser variant in complex with D-Threonine
Descriptor: D-THREONINE, GLYCEROL, SODIUM ION, ...
Authors:Petrillo, G, Hernandez, K, Bujons, J, Clapes, P, Uson, I.
Deposit date:2019-11-21
Release date:2020-04-29
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Structural insights into nucleophile substrate specificity in variants of N-Serine hydroxymethyltransferase from Streptococcus thermophilus
To Be Published
6Y0F
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BU of 6y0f by Molmil
Structure of human FAPalpha in complex with linagliptin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 8-[(3R)-3-Aminopiperidin-1-yl]-7-but-2-yn-1-yl-3-methyl-1-[(4-methylquinazolin-2-yl)methyl]-3,7-dihydro-1H-purine-2,6-d ione, ...
Authors:Nar, H, Schnapp, G, Schreiner, P.
Deposit date:2020-02-07
Release date:2021-02-17
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.924 Å)
Cite:Structure of human FAPalpha in complex with linagliptin
To Be Published
4PNN
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BU of 4pnn by Molmil
Crystal Structure of human Tankyrase 2 in complex with 4HQN.
Descriptor: Tankyrase-2, ZINC ION, quinazolin-4(1H)-one
Authors:Qiu, W, Lam, R, Romanov, V, Gordon, R, Gebremeskel, S, Vodsedalek, J, Thompson, C, Beletskaya, I, Battaile, K.P, Pai, E.F, Chirgadze, N.Y.
Deposit date:2014-05-24
Release date:2014-10-15
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Insights into the binding of PARP inhibitors to the catalytic domain of human tankyrase-2.
Acta Crystallogr.,Sect.D, 70, 2014
4PO2
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BU of 4po2 by Molmil
Crystal Structure of the Stress-Inducible Human Heat Shock Protein HSP70 Substrate-Binding Domain in Complex with Peptide Substrate
Descriptor: HSP70 substrate peptide, Heat shock 70 kDa protein 1A/1B, PHOSPHATE ION, ...
Authors:Zhang, P, Leu, J.I, Murphy, M.E, George, D.L, Marmorstein, R.
Deposit date:2014-02-24
Release date:2014-08-20
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the stress-inducible human heat shock protein 70 substrate-binding domain in complex with Peptide substrate.
Plos One, 9, 2014
1JUJ
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BU of 1juj by Molmil
Human Thymidylate Synthase Bound to dUMP and LY231514, a Pyrrolo(2,3-d)pyrimidine-based Antifolate
Descriptor: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, 2-{4-[2-(2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDIN-5-YL)-ETHYL]-BENZOYLAMINO}-PENTANEDIOIC ACID, THYMIDYLATE SYNTHASE
Authors:Sayre, P.H, Finer-Moore, J.S, Fritz, T.A, Biermann, D, Gates, S.B, MacKellar, W.C, Patel, V.F, Stroud, R.M.
Deposit date:2001-08-24
Release date:2001-09-19
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3 Å)
Cite:Multi-targeted antifolates aimed at avoiding drug resistance form covalent closed inhibitory complexes with human and Escherichia coli thymidylate synthases.
J.Mol.Biol., 313, 2001
6TNQ
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BU of 6tnq by Molmil
Crystal structure of the human Arc N-lobe bound to repeat 4 from GKAP
Descriptor: ACETYL GROUP, Activity-regulated cytoskeleton-associated protein, Chains: B,D,F
Authors:Hallin, E.I, Bramham, C.R, Kursula, P.
Deposit date:2019-12-10
Release date:2021-01-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural properties and peptide ligand binding of the capsid homology domains of human Arc.
Biochem Biophys Rep, 26, 2021
6TSS
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BU of 6tss by Molmil
Crystal structure of horse L ferritin (HoLf) Fe(III)-loaded for 60 minutes
Descriptor: CADMIUM ION, FE (III) ION, Ferritin light chain, ...
Authors:Pozzi, C, Ciambellotti, S, Turano, P, Mangani, S.
Deposit date:2019-12-21
Release date:2020-02-19
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Iron Biomineral Growth from the Initial Nucleation Seed in L-Ferritin.
Chemistry, 26, 2020
6AVC
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BU of 6avc by Molmil
Exploring Cystine Dense Peptide Space to Open a Unique Molecular Toolbox
Descriptor: Potassium channel toxin alpha-KTx 1.5
Authors:Gewe, M.M, Rupert, P, Strong, R.K.
Deposit date:2017-09-01
Release date:2018-02-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Screening, large-scale production and structure-based classification of cystine-dense peptides.
Nat. Struct. Mol. Biol., 25, 2018
1D9F
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BU of 1d9f by Molmil
CRYSTAL STRUCTURE OF THE COMPLEX OF DNA POLYMERASE I KLENOW FRAGMENT WITH DNA TETRAMER CARRYING 2'-O-(3-AMINOPROPYL)-RNA MODIFICATION 5'-D(TT)-AP(U)-D(T)-3'
Descriptor: DNA POLYMERASE I, DNA/RNA (5'-D(*TP*TP)-R(*(U31)P)-D(*T)-3'), SULFATE ION, ...
Authors:Teplova, M, Wallace, S.T, Tereshko, V, Minasov, G, Simons, A.M, Cook, P.D, Manoharan, M, Egli, M.
Deposit date:1999-10-27
Release date:1999-12-02
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural origins of the exonuclease resistance of a zwitterionic RNA.
Proc.Natl.Acad.Sci.USA, 96, 1999
6TTT
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BU of 6ttt by Molmil
Crystal structure of the human METTL3-METTL14 complex bound to Compound 2 (ASI_M3M_140)
Descriptor: (2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-~{N}-methyl-3,4-bis(oxidanyl)oxolane-2-carboxamide, ACETATE ION, N6-adenosine-methyltransferase catalytic subunit, ...
Authors:Bedi, R.K, Huang, D, Sledz, P, Caflisch, A.
Deposit date:2019-12-30
Release date:2020-03-04
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Small-Molecule Inhibitors of METTL3, the Major Human Epitranscriptomic Writer.
Chemmedchem, 15, 2020
1JY6
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BU of 1jy6 by Molmil
B4DIMERA: A DE NOVO DESIGNED FOUR-STRANDED BETA-SHEET ASSEMBLED USING A DISULFIDE BOND
Descriptor: B4DIMER
Authors:Venkatraman, J, Nagana Gowda, G.A, Balaram, P.
Deposit date:2001-09-11
Release date:2002-06-12
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Design and construction of an open multistranded beta-sheet polypeptide stabilized by a disulfide bridge.
J.Am.Chem.Soc., 124, 2002
4POF
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BU of 4pof by Molmil
PfMCM N-terminal domain without DNA
Descriptor: Cell division control protein 21, ZINC ION
Authors:Froelich, C.A, Kang, S, Epling, L.B, Bell, S.P, Enemark, E.J.
Deposit date:2014-02-25
Release date:2014-04-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.648 Å)
Cite:A conserved MCM single-stranded DNA binding element is essential for replication initiation.
Elife, 3, 2014
6TQM
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BU of 6tqm by Molmil
Escherichia coli AdhE structure in its compact conformation
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Aldehyde-alcohol dehydrogenase, FE (III) ION
Authors:Fronzes, R, Pony, P.
Deposit date:2019-12-16
Release date:2020-06-03
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Filamentation of the bacterial bi-functional alcohol/aldehyde dehydrogenase AdhE is essential for substrate channeling and enzymatic regulation.
Nat Commun, 11, 2020
6TRG
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BU of 6trg by Molmil
Salmonella typhimurium neuraminidase mutant (D100S)
Descriptor: GLYCEROL, PHOSPHATE ION, Sialidase
Authors:Garman, E.F, Salinger, M.T, Murray, J.W, Laver, W.G, Kuhn, P, Vimr, E.R.
Deposit date:2019-12-18
Release date:2020-01-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1 Å)
Cite:Salmonella typhimurium neuraminidase mutant (D100S)
To Be Published
1K1S
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BU of 1k1s by Molmil
Crystal Structure of DinB from Sulfolobus solfataricus
Descriptor: DBH protein
Authors:Silvian, L.F, Toth, E.A, Pham, P, Goodman, M.F, Ellenberger, T.
Deposit date:2001-09-25
Release date:2001-10-31
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of a DinB family error-prone DNA polymerase from Sulfolobus solfataricus.
Nat.Struct.Biol., 8, 2001
6H41
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BU of 6h41 by Molmil
Structure of the complex of the IL-5 inhibitory peptide AF17121 bound to the IL-5 receptor IL-5Ralpha
Descriptor: Interleukin-5 receptor subunit alpha, VAL-ASP-GLU-CYS-TRP-ARG-ILE-ILE-ALA-SER-HIS-THR-TRP-PHE-CYS-ALA-GLU-GLU
Authors:Mueller, T.D, Scheide, J.P.
Deposit date:2018-07-20
Release date:2018-12-26
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural Basis of Interleukin-5 Inhibition by the Small Cyclic Peptide AF17121.
J. Mol. Biol., 431, 2019
6TN7
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BU of 6tn7 by Molmil
Crystal structure of the human Arc C-lobe
Descriptor: Activity-regulated cytoskeleton-associated protein, GLYCEROL
Authors:Hallin, E.I, Bramham, C.R, Kursula, P.
Deposit date:2019-12-06
Release date:2020-12-16
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Structural properties and peptide ligand binding of the capsid homology domains of human Arc.
Biochem Biophys Rep, 26, 2021
1CZQ
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BU of 1czq by Molmil
CRYSTAL STRUCTURE OF THE D10-P1/IQN17 COMPLEX: A D-PEPTIDE INHIBITOR OF HIV-1 ENTRY BOUND TO THE GP41 COILED-COIL POCKET.
Descriptor: CHLORIDE ION, D-PEPTIDE INHIBITOR, FUSION PROTEIN BETWEEN THE HYDROPHOBIC POCKET OF HIV GP41 AND GCN4-PIQI
Authors:Eckert, D.M, Malashkevich, V.N, Hong, L.H, Carr, P.A, Kim, P.S.
Deposit date:1999-09-06
Release date:1999-10-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Inhibiting HIV-1 entry: discovery of D-peptide inhibitors that target the gp41 coiled-coil pocket.
Cell(Cambridge,Mass.), 99, 1999
4P7L
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BU of 4p7l by Molmil
Structure of Escherichia coli PgaB C-terminal domain, P212121 crystal form
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase
Authors:Little, D.J, Li, G, Ing, C, DiFrancesco, B, Bamford, N.C, Robinson, H, Nitz, M, Pomes, R, Howell, P.L.
Deposit date:2014-03-27
Release date:2014-07-02
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.802 Å)
Cite:Modification and periplasmic translocation of the biofilm exopolysaccharide poly-beta-1,6-N-acetyl-D-glucosamine.
Proc.Natl.Acad.Sci.USA, 111, 2014
3IIZ
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BU of 3iiz by Molmil
X-ray structure of the FeFe-hydrogenase maturase HydE from T. maritima in complex with S-adenosyl-L-methionine
Descriptor: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE, Biotin synthetase, putative, ...
Authors:Nicolet, Y, Amara, P, Mouesca, J.M, Fontecilla-Camps, J.C.
Deposit date:2009-08-03
Release date:2009-09-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Unexpected electron transfer mechanism upon AdoMet cleavage in radical SAM proteins
Proc.Natl.Acad.Sci.USA, 2009
1JHL
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BU of 1jhl by Molmil
THREE-DIMENSIONAL STRUCTURE OF A HETEROCLITIC ANTIGEN-ANTIBODY CROSS-REACTION COMPLEX
Descriptor: IGG1-KAPPA D11.15 FV (HEAVY CHAIN), IGG1-KAPPA D11.15 FV (LIGHT CHAIN), PHEASANT EGG WHITE LYSOZYME
Authors:Chitarra, V, Alzari, P.M, Bentley, G.A, Bhat, T.N, Eisele, J.-L, Poljak, R.J.
Deposit date:1993-05-04
Release date:1994-01-31
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Three-dimensional structure of a heteroclitic antigen-antibody cross-reaction complex.
Proc.Natl.Acad.Sci.USA, 90, 1993
6H6X
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BU of 6h6x by Molmil
Structure of an evolved dimeric form of the UbiD-class enzyme HmfF from Pelotomaculum thermopropionicum in complex with prFMN
Descriptor: 1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-y l)-D-ribitol, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases, CALCIUM ION, ...
Authors:Payne, K.A.P, Leys, D.
Deposit date:2018-07-30
Release date:2019-02-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Enzymatic Carboxylation of 2-Furoic Acid Yields 2,5-Furandicarboxylic Acid (FDCA).
Acs Catalysis, 9, 2019

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