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PDB: 45697 results

4YQD
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Crystal structure of TrmD, a M1G37 tRNA Methyltransferase with SAM-competitive compounds
Descriptor: 6-{[(1-{2-[(3-methylbenzoyl)amino]ethyl}cyclohexyl)methyl]amino}pyridine-3-carboxamide, tRNA (guanine-N(1)-)-methyltransferase
Authors:Elkins, P.A, Bonnette, W.G, Madauss, K.P.
Deposit date:2015-03-13
Release date:2015-11-11
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of TrmD, a M1G37 tRNA Methyltransferase with SAM-competitive compounds
To be published
8AN5
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BU of 8an5 by Molmil
MenAT1 toxin-antitoxin complex (rv0078a-rv0078b) from Mycobacterium tuberculosis H37Rv
Descriptor: Bacterial toxin, Conserved protein
Authors:Xu, X, Usher, B, Gutierrez, C, Barriot, R, Arrowsmith, T.J, Han, X, Redder, P, Neyrolles, O, Blower, T.R, Genevaux, P.
Deposit date:2022-08-04
Release date:2023-08-02
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:MenT nucleotidyltransferase toxins extend tRNA acceptor stems and can be inhibited by asymmetrical antitoxin binding.
Nat Commun, 14, 2023
6TKH
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BU of 6tkh by Molmil
Tsetse thrombin inhibitor in complex with human alpha-thrombin - orthorhombic form at 7keV
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, SODIUM ION, ...
Authors:Calisto, B.M, Ripoll-Rozada, J, de Sanctis, D, Pereira, P.J.B.
Deposit date:2019-11-28
Release date:2020-11-04
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Sulfotyrosine-Mediated Recognition of Human Thrombin by a Tsetse Fly Anticoagulant Mimics Physiological Substrates.
Cell Chem Biol, 28, 2021
5NQU
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BU of 5nqu by Molmil
Tubulin Darpin cryo structure
Descriptor: Designed Ankyrin Repeat Protein (DARPIN) D1, GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Weinert, T, Olieric, N, James, D, Gashi, D, Nogly, P, Jaeger, K, Steinmetz, M.O, Standfuss, J.
Deposit date:2017-04-21
Release date:2017-09-27
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Serial millisecond crystallography for routine room-temperature structure determination at synchrotrons.
Nat Commun, 8, 2017
5NM5
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BU of 5nm5 by Molmil
Tubulin Darpin room-temperature structure in complex with Colchicine determined by serial millisecond crystallography
Descriptor: Designed Ankyrin Repeat Protein (DARPIN) D1, GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Weinert, T, Olieric, N, James, D, Gashi, D, Nogly, P, Jaeger, K, Steinmetz, M.O, Standfuss, J.
Deposit date:2017-04-05
Release date:2017-09-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Serial millisecond crystallography for routine room-temperature structure determination at synchrotrons.
Nat Commun, 8, 2017
6JQ3
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BU of 6jq3 by Molmil
Crystal Structure of H2-Kb in complex with a DPAGT1 mutant peptide
Descriptor: Beta-2-microglobulin, DPAGT1 mutant antigen SIIVFNLL, H-2 class I histocompatibility antigen, ...
Authors:Bai, P, Zhou, Q, Wei, P, Yin, L.
Deposit date:2019-03-28
Release date:2020-05-06
Last modified:2021-02-17
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Immune-based mutation classification enables neoantigen prioritization and immune feature discovery in cancer immunotherapy.
Oncoimmunology, 10, 2021
5FMW
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BU of 5fmw by Molmil
The poly-C9 component of the Complement Membrane Attack Complex
Descriptor: POLYC9
Authors:Dudkina, N.V, Spicer, B.A, Reboul, C.F, Conroy, P.J, Lukoyanova, N, Elmlund, H, Law, R.H.P, Ekkel, S.M, Kondos, S.C, Goode, R.J.A, Ramm, G, Whisstock, J.C, Saibil, H.R, Dunstone, M.A.
Deposit date:2015-11-10
Release date:2016-02-17
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (6.7 Å)
Cite:Structure of the Poly-C9 Component of the Complement Membrane Attack Complex
Nat.Commun., 7, 2016
8QCF
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BU of 8qcf by Molmil
yeast cytoplasmic exosome-Ski2 complex degrading a RNA substrate
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Antiviral helicase SKI2, Exosome complex component CSL4, ...
Authors:Keidel, A, Koegel, A, Reichelt, P, Kowalinski, E, Schaefer, I.B, Conti, E.
Deposit date:2023-08-25
Release date:2024-01-10
Method:ELECTRON MICROSCOPY (2.55 Å)
Cite:Concerted structural rearrangements enable RNA channeling into the cytoplasmic Ski238-Ski7-exosome assembly.
Mol.Cell, 83, 2023
6BJH
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BU of 6bjh by Molmil
CIRV p19 mutant T111S in complex with siRNA
Descriptor: RNA (5'-R(P*CP*GP*UP*AP*CP*GP*CP*GP*GP*AP*AP*UP*AP*CP*UP*UP*CP*GP*AP*UP*U)-3'), RNA (5'-R(P*UP*CP*GP*AP*AP*GP*UP*AP*UP*UP*CP*CP*GP*CP*GP*UP*AP*CP*GP*UP*U)-3'), RNA silencing suppressor p19
Authors:Foss, D.V, Schirle, N.T, MacRae, I.J, Pezacki, J.P.
Deposit date:2017-11-06
Release date:2019-01-16
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Structural insights into interactions between viral suppressor of RNA silencing protein p19 mutants and small RNAs.
Febs Open Bio, 9, 2019
6TEH
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BU of 6teh by Molmil
Baseplate of native GTA particle computed with C3 symmetry
Descriptor: IRON/SULFUR CLUSTER, Putative gene transfer agent protein
Authors:Bardy, P, Fuzik, T, Hrebik, D, Pantucek, R, Beatty, J.T, Plevka, P.
Deposit date:2019-11-12
Release date:2020-07-22
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.99 Å)
Cite:Structure and mechanism of DNA delivery of a gene transfer agent.
Nat Commun, 11, 2020
6BKU
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BU of 6bku by Molmil
Crystal Structure of the Human CAMKK2B bound to GSK650394
Descriptor: 2-cyclopentyl-4-(5-phenyl-1H-pyrrolo[2,3-b]pyridin-3-yl)benzoic acid, Calcium/calmodulin-dependent protein kinase kinase 2, FORMIC ACID
Authors:Counago, R.M, dos Reis, C.V, de Souza, G.P, Ramos, P.Z, Drewry, D, Massirer, K.B, Arruda, P, Edwards, A.M, Elkins, J.M, Structural Genomics Consortium (SGC)
Deposit date:2017-11-09
Release date:2017-11-29
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of the Human CAMKK2B bound to GSK650394
To Be Published
5FTK
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BU of 5ftk by Molmil
Cryo-EM structure of human p97 bound to ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE
Authors:Banerjee, S, Bartesaghi, A, Merk, A, Rao, P, Bulfer, S.L, Yan, Y, Green, N, Mroczkowski, B, Neitz, R.J, Wipf, P, Falconieri, V, Deshaies, R.J, Milne, J.L.S, Huryn, D, Arkin, M, Subramaniam, S.
Deposit date:2016-01-14
Release date:2016-01-27
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:2.3 A Resolution Cryo-Em Structure of Human P97 and Mechanism of Allosteric Inhibition
Science, 351, 2016
5JQ5
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BU of 5jq5 by Molmil
Crystal structure of CDK2 in complex with inhibitor ICEC0942
Descriptor: (3R,4R)-4-[[[7-[(phenylmethyl)amino]-3-propan-2-yl-pyrazolo[1,5-a]pyrimidin-5-yl]amino]methyl]piperidin-3-ol, ACETATE ION, Cyclin-dependent kinase 2
Authors:Hazel, P, Freemont, P.S.
Deposit date:2016-05-04
Release date:2017-02-08
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Inhibitor Selectivity for Cyclin-Dependent Kinase 7: A Structural, Thermodynamic, and Modelling Study.
ChemMedChem, 12, 2017
5JQ8
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BU of 5jq8 by Molmil
Crystal structure of CDK2 in complex with inhibitor ICEC0943
Descriptor: (3S,4S)-4-[[[7-[(phenylmethyl)amino]-3-propan-2-yl-pyrazolo[1,5-a]pyrimidin-5-yl]amino]methyl]piperidin-3-ol, Cyclin-dependent kinase 2
Authors:Hazel, P, Freemont, P.S.
Deposit date:2016-05-04
Release date:2017-02-08
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Inhibitor Selectivity for Cyclin-Dependent Kinase 7: A Structural, Thermodynamic, and Modelling Study.
ChemMedChem, 12, 2017
7X24
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BU of 7x24 by Molmil
Cryo-EM structure of non gastric H,K-ATPase alpha2 SPWC mutant in (2K+)E2-AlF state
Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL, ...
Authors:Abe, K, Nakanishi, H, Young, V, Artigas, P.
Deposit date:2022-02-25
Release date:2022-10-05
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure and function of H + /K + pump mutants reveal Na + /K + pump mechanisms.
Nat Commun, 13, 2022
6GRR
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BU of 6grr by Molmil
Crystal structure of Escherichia coli amine oxidase mutant I342F/E573Q
Descriptor: Amine oxidase, CALCIUM ION, COPPER (II) ION, ...
Authors:Gaule, T.G, Smith, M.A, Tych, K.M, Pirrat, P, Trinh, C.H, Pearson, A.R, Knowles, P.F, McPherson, M.J.
Deposit date:2018-06-12
Release date:2018-09-05
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Oxygen Activation Switch in the Copper Amine Oxidase of Escherichia coli.
Biochemistry, 57, 2018
4YQG
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BU of 4yqg by Molmil
Crystal structure of TrmD, a M1G37 tRNA Methyltransferase with SAM-competitive compounds
Descriptor: 4-amino-N-(cyclohexylmethyl)-1,2,5-oxadiazole-3-carboxamide, tRNA (guanine-N(1)-)-methyltransferase
Authors:Elkins, P.A, Bonnette, W.G, Williams, S.P, Stuckey, J.A.
Deposit date:2015-03-13
Release date:2016-03-16
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.858 Å)
Cite:Crystal structure of TrmD, a M1G37 tRNA Methyltransferase with SAM-competitive compounds
To Be Published
6BNV
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BU of 6bnv by Molmil
CryoEM structure of MyosinVI-actin complex in the rigor (nucleotide-free) state, backbone-averaged with side chains truncated to alanine
Descriptor: Actin, alpha skeletal muscle, Calmodulin, ...
Authors:Gurel, P.S, Alushin, G.A.
Deposit date:2017-11-17
Release date:2018-01-10
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Cryo-EM structures reveal specialization at the myosin VI-actin interface and a mechanism of force sensitivity.
Elife, 6, 2017
1PI2
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BU of 1pi2 by Molmil
REACTIVE SITES OF AN ANTICARCINOGENIC BOWMAN-BIRK PROTEINASE INHIBITOR ARE SIMILAR TO OTHER TRYPSIN INHIBITORS
Descriptor: BOWMAN-BIRK INHIBITOR (PI-II)
Authors:Chen, P, Rose, J, Wang, B.C.
Deposit date:1991-03-26
Release date:1992-04-15
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Reactive sites of an anticarcinogenic Bowman-Birk proteinase inhibitor are similar to other trypsin inhibitors.
J.Biol.Chem., 267, 1992
6ROU
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BU of 6rou by Molmil
REP related 18-mer DNA
Descriptor: REP related 18-mer DNA from H. parasuis, STRONTIUM ION
Authors:Kolenko, P, Svoboda, J, Schneider, B.
Deposit date:2019-05-13
Release date:2020-07-08
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.902 Å)
Cite:Structural variability of CG-rich DNA 18-mers accommodating double T-T mismatches.
Acta Crystallogr D Struct Biol, 76, 2020
3KHO
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BU of 3kho by Molmil
Crystal structure of murine Ig-beta (CD79b) homodimer
Descriptor: B-cell antigen receptor complex-associated protein beta chain, SULFATE ION
Authors:Radaev, S, Sun, P.D.
Deposit date:2009-10-30
Release date:2010-08-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Structural and Functional Studies of Igalphabeta and Its Assembly with the B Cell Antigen Receptor.
Structure, 18, 2010
1PAL
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BU of 1pal by Molmil
IONIC INTERACTIONS WITH PARVALBUMINS. CRYSTAL STRUCTURE DETERMINATION OF PIKE 4.10 PARVALBUMIN IN FOUR DIFFERENT IONIC ENVIRONMENTS
Descriptor: AMMONIUM ION, CALCIUM ION, PARVALBUMIN
Authors:Declercq, J.P, Tinant, B, Parello, J, Rambaud, J.
Deposit date:1990-11-08
Release date:1992-01-15
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Ionic interactions with parvalbumins. Crystal structure determination of pike 4.10 parvalbumin in four different ionic environments.
J.Mol.Biol., 220, 1991
6MJU
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BU of 6mju by Molmil
human cGAS catalytic domain bound with the inhibitor G108
Descriptor: 1-[6,7-dichloro-9-(1H-pyrazol-4-yl)-1,3,4,5-tetrahydro-2H-pyrido[4,3-b]indol-2-yl]-2-hydroxyethan-1-one, Cyclic GMP-AMP synthase, ZINC ION
Authors:Lama, L, Adura, C, Xie, W, Tomita, D, Kamei, T, Kuryavyi, V, Gogakos, T, Steinberg, J.I, Miller, M, Ramos-Espiritu, L, Asano, Y, Hashizume, S, Aida, J, Imaeda, T, Okamoto, R, Jennings, A.J, Michinom, M, Kuroita, T, Stamford, A, Gao, P, Meinke, P, Glickman, J.F, Patel, D.J, Tuschl, T.
Deposit date:2018-09-22
Release date:2019-05-29
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Development of human cGAS-specific small-molecule inhibitors for repression of dsDNA-triggered interferon expression.
Nat Commun, 10, 2019
6RQO
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BU of 6rqo by Molmil
Steady-state-SMX activated state structure of bacteriorhodopsin
Descriptor: Bacteriorhodopsin, RETINAL
Authors:Weinert, T, Skopintsev, P, James, D, Kekilli, D, Furrer, A, Bruenle, S, Mous, S, Nogly, P, Standfuss, J.
Deposit date:2019-05-16
Release date:2019-07-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Proton uptake mechanism in bacteriorhodopsin captured by serial synchrotron crystallography.
Science, 365, 2019
4YMD
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BU of 4ymd by Molmil
CL-K1 trimer bound to man(alpha1-2)man
Descriptor: CALCIUM ION, Collectin-11, GLYCEROL, ...
Authors:Wallis, R, Venkatraman Girija, U, Gingras, A.R, Moody, P.C.E, Marshall, J.E.
Deposit date:2015-03-06
Release date:2015-04-08
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.87 Å)
Cite:Molecular basis of sugar recognition by collectin-K1 and the effects of mutations associated with 3MC syndrome.
Bmc Biol., 13, 2015

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