Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 7397 results

1OB2
DownloadVisualize
BU of 1ob2 by Molmil
E. coli elongation factor EF-Tu complexed with the antibiotic kirromycin, a GTP analog, and Phe-tRNA
Descriptor: ELONGATION FACTOR TU, KIRROMYCIN, MAGNESIUM ION, ...
Authors:Kristensen, O, Nissen, P, Nyborg, J.
Deposit date:2003-01-24
Release date:2004-05-27
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:Kirromycin Defines a Specific Domain Arrangement of Elongation Factor EF-TU
To be Published
6CX8
DownloadVisualize
BU of 6cx8 by Molmil
Crystal structure of spermidine/spermine N-acetyltransferase SpeG from Vibrio cholerae in complex with manganese ions.
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ISOPROPYL ALCOHOL, MANGANESE (II) ION, ...
Authors:Filippova, E.V, Minasov, G, Kiryukhina, O, Anderson, W.F, Satchell, K.J.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2018-04-02
Release date:2018-04-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Crystal structure of spermidine/spermine N-acetyltransferase SpeG from Vibrio cholerae in complex with manganese ions.
To Be Published
6BYM
DownloadVisualize
BU of 6bym by Molmil
Crystal structure of the sterol-bound second StART domain of yeast Lam4
Descriptor: 25-HYDROXYCHOLESTEROL, Sterol-binding protein
Authors:Jentsch, J.A, Kiburu, I.N, Wu, J, Pandey, K, Boudker, O, Menon, A.K.
Deposit date:2017-12-20
Release date:2018-01-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis of sterol binding and transport by a yeast StARkin domain.
J. Biol. Chem., 293, 2018
6BRT
DownloadVisualize
BU of 6brt by Molmil
F-box protein CTH with hydrolase
Descriptor: (5R)-5-hydroxy-3-methylfuran-2(5H)-one, D3-CTH-D14-D-ring
Authors:Shabek, N, Zheng, N, Mao, H, Hinds, T.R, Ticchiarelli, F, Leyser, O.
Deposit date:2017-12-01
Release date:2018-11-21
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.393 Å)
Cite:Structural plasticity of D3-D14 ubiquitin ligase in strigolactone signalling.
Nature, 563, 2018
6C4Q
DownloadVisualize
BU of 6c4q by Molmil
1.16 Angstrom Resolution Crystal Structure of Acyl Carrier Protein Domain (residues 1-100) of Polyketide Synthase Pks13 from Mycobacterium tuberculosis
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, Polyketide synthase Pks13
Authors:Minasov, G, Shuvalova, L, Dubrovska, I, Kiryukhina, O, Grimshaw, S, Kwon, K, Anderson, W.F, Satchell, K.J.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2018-01-12
Release date:2018-01-24
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:1.16 Angstrom Resolution Crystal Structure of Acyl Carrier Protein Domain (residues 1-100) of Polyketide Synthase Pks13 from Mycobacterium tuberculosis.
To Be Published
1OF9
DownloadVisualize
BU of 1of9 by Molmil
Solution structure of the pore forming toxin of entamoeba histolytica (Amoebapore A)
Descriptor: PORE-FORMING PEPTIDE AMEOBAPORE A
Authors:Hecht, O, Schleinkofer, K, Bruhn, H, Leippe, M, Van Nuland, N, Dingley, A.J, Grotzinger, J.
Deposit date:2003-04-09
Release date:2004-02-26
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structure of the Pore-Forming Protein of Entamoeba Histolytica
J.Biol.Chem., 279, 2004
3HQ9
DownloadVisualize
BU of 3hq9 by Molmil
CcpA from G. sulfurreducens, S134P variant
Descriptor: (R,R)-2,3-BUTANEDIOL, CALCIUM ION, Cytochrome c551 peroxidase, ...
Authors:Hoffmann, M, Seidel, J, Einsle, O.
Deposit date:2009-06-05
Release date:2009-09-22
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:CcpA from Geobacter sulfurreducens is a basic di-heme cytochrome c peroxidase.
J.Mol.Biol., 393, 2009
1I77
DownloadVisualize
BU of 1i77 by Molmil
CYTOCHROME C3 FROM DESULFOVIBRIO DESULFURICANS ESSEX 6
Descriptor: CYTOCHROME C3, PROTOPORPHYRIN IX CONTAINING FE
Authors:Einsle, O, Foerster, S, Mann, K.H, Fritz, G, Messerschmidt, A, Kroneck, P.M.H.
Deposit date:2001-03-08
Release date:2001-08-29
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Spectroscopic investigation and determination of reactivity and structure of the tetraheme cytochrome c3 from Desulfovibrio desulfuricans Essex 6.
Eur.J.Biochem., 268, 2001
3I0U
DownloadVisualize
BU of 3i0u by Molmil
Structure of the type III effector/phosphothreonine lyase OspF from Shigella flexneri
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Phosphothreonine lyase ospF
Authors:Singer, A.U, Skarina, T, Nocek, B, Gordon, R, Lam, R, Kagan, O, Edwards, A.M, Joachimiak, A, Chirgadze, N.Y, Anderson, W.F, Savchenko, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2009-06-25
Release date:2009-09-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of the type III effector/phosphothreonine lyase OspF from Shigella flexneri
TO BE PUBLISHED
3HUP
DownloadVisualize
BU of 3hup by Molmil
High-resolution structure of the extracellular domain of human CD69
Descriptor: CHLORIDE ION, Early activation antigen CD69, SODIUM ION
Authors:Kolenko, P, Dohnalek, J, Skalova, T, Hasek, J, Duskova, J, Vanek, O, Bezouska, K.
Deposit date:2009-06-15
Release date:2009-12-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.371 Å)
Cite:The high-resolution structure of the extracellular domain of human CD69 using a novel polymer
Acta Crystallogr.,Sect.F, 65, 2009
1JCM
DownloadVisualize
BU of 1jcm by Molmil
TRPC STABILITY MUTANT CONTAINING AN ENGINEERED DISULPHIDE BRIDGE AND IN COMPLEX WITH A CDRP-RELATED SUBSTRATE
Descriptor: 1-(O-CARBOXY-PHENYLAMINO)-1-DEOXY-D-RIBULOSE-5-PHOSPHATE, INDOLE-3-GLYCEROL-PHOSPHATE SYNTHASE, PHOSPHATE ION
Authors:Ivens, A, Mayans, O, Szadkowski, H, Wilmanns, M, Kirschner, K.
Deposit date:2001-06-10
Release date:2002-06-10
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Stabilization of a (betaalpha)8-barrel protein by an engineered disulfide bridge.
Eur.J.Biochem., 269, 2002
6CMO
DownloadVisualize
BU of 6cmo by Molmil
Rhodopsin-Gi complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab Heavy chain, Fab light chain, ...
Authors:Kang, Y, Kuybeda, O, de Waal, P.W, Mukherjee, S, Van Eps, N, Dutka, P, Zhou, X.E, Bartesaghi, A, Erramilli, S, Morizumi, T, Gu, X, Yin, Y, Liu, P, Jiang, Y, Meng, X, Zhao, G, Melcher, K, Earnst, O.P, Kossiakoff, A.A, Subramaniam, S, Xu, H.E.
Deposit date:2018-03-05
Release date:2018-06-20
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Cryo-EM structure of human rhodopsin bound to an inhibitory G protein.
Nature, 558, 2018
3HTS
DownloadVisualize
BU of 3hts by Molmil
HEAT SHOCK TRANSCRIPTION FACTOR/DNA COMPLEX
Descriptor: 5'-D(*GP*GP*TP*TP*CP*TP*AP*GP*AP*AP*CP*C)-3', GLYCEROL, HEAT SHOCK TRANSCRIPTION FACTOR
Authors:Littlefield, O, Nelson, H.C.M.
Deposit date:1998-11-16
Release date:1999-04-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:A new use for the 'wing' of the 'winged' helix-turn-helix motif in the HSF-DNA cocrystal.
Nat.Struct.Biol., 6, 1999
6CMZ
DownloadVisualize
BU of 6cmz by Molmil
2.3 Angstrom Resolution Crystal Structure of Dihydrolipoamide Dehydrogenase from Burkholderia cenocepacia in Complex with FAD and NAD
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, D-MALATE, ...
Authors:Minasov, G, Shuvalova, L, Dubrovska, I, Kiryukhina, O, Grimshaw, S, Kwon, K, Anderson, W.F, Satchell, K.J.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2018-03-06
Release date:2018-03-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:2.3 Angstrom Resolution Crystal Structure of Dihydrolipoamide Dehydrogenase from Burkholderia cenocepacia in Complex with FAD and NAD.
To Be Published
3I3O
DownloadVisualize
BU of 3i3o by Molmil
2.06 Angstrom resolution crystal structure of a short chain dehydrogenase from Bacillus anthracis str. 'Ames Ancestor' in complex with NAD-acetone
Descriptor: CACODYLATE ION, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Halavaty, A.S, Minasov, G, Skarina, T, Onopriyenko, O, Peterson, S, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2009-06-30
Release date:2009-08-04
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:2.06 Angstrom resolution crystal structure of a short chain dehydrogenase from Bacillus anthracis str. 'Ames Ancestor' in complex with NAD-acetone
To be Published
1JMY
DownloadVisualize
BU of 1jmy by Molmil
Truncated Recombinant Human Bile Salt Stimulated Lipase
Descriptor: BILE-SALT-ACTIVATED LIPASE, SULFATE ION
Authors:Moore, S.A, Kingston, R.L, Loomes, K.M, Hernell, O, Blackberg, L, Baker, H.M, Baker, E.N.
Deposit date:2001-07-20
Release date:2001-08-08
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The structure of truncated recombinant human bile salt-stimulated lipase reveals bile salt-independent conformational flexibility at the active-site loop and provides insights into heparin binding.
J.Mol.Biol., 312, 2001
1P97
DownloadVisualize
BU of 1p97 by Molmil
NMR structure of the C-terminal PAS domain of HIF2a
Descriptor: Endothelial PAS domain protein 1
Authors:Erbel, P.J, Card, P.B, Karakuzu, O, Bruick, R.K, Gardner, K.H.
Deposit date:2003-05-09
Release date:2004-01-13
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural basis for PAS domain heterodimerization in the basic helix-loop-helix-PAS transcription factor hypoxia-inducible factor.
Proc.Natl.Acad.Sci.USA, 100, 2003
1JQL
DownloadVisualize
BU of 1jql by Molmil
Mechanism of Processivity Clamp Opening by the Delta Subunit Wrench of the Clamp Loader Complex of E. coli DNA Polymerase III: Structure of beta-delta (1-140)
Descriptor: DNA Polymerase III, BETA CHAIN, DELTA SUBUNIT
Authors:Jeruzalmi, D, Yurieva, O, Zhao, Y, Young, M, Stewart, J, Hingorani, M, O'Donnell, M, Kuriyan, J.
Deposit date:2001-08-07
Release date:2001-09-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase III.
Cell(Cambridge,Mass.), 106, 2001
3HMQ
DownloadVisualize
BU of 3hmq by Molmil
1.9 Angstrom resolution crystal structure of a NAD synthetase (nadE) from Salmonella typhimurium LT2 in complex with NAD(+)
Descriptor: NH(3)-dependent NAD(+) synthetase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SULFATE ION
Authors:Halavaty, A.S, Wawrzak, Z, Skarina, T, Onopriyenko, O, Peterson, S.N, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2009-05-29
Release date:2009-06-16
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:1.9 Angstrom resolution crystal structure of a NAD synthetase (nadE) from Salmonella typhimurium LT2 in complex with NAD(+)
To be Published
3HQ6
DownloadVisualize
BU of 3hq6 by Molmil
Cytochrome c peroxidase from G. sulfurreducens, wild type
Descriptor: CALCIUM ION, Cytochrome c551 peroxidase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Hoffmann, M, Seidel, J, Einsle, O.
Deposit date:2009-06-05
Release date:2009-09-22
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:CcpA from Geobacter sulfurreducens is a basic di-heme cytochrome c peroxidase.
J.Mol.Biol., 393, 2009
1O7K
DownloadVisualize
BU of 1o7k by Molmil
human p47 PX domain complex with sulphates
Descriptor: NEUTROPHIL CYTOSOL FACTOR 1, SULFATE ION
Authors:Karathanassis, D, Bravo, J, Perisic, O, Pacold, C.M, Williams, R.L.
Deposit date:2002-11-07
Release date:2002-11-20
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Binding of the Px Domain of P47Phox to Phosphatidylinositol 3.4-Bisphosphate and Phosphatidic Acid is Masked by an Intramolecular Interaction
Embo J., 21, 2002
6BQ8
DownloadVisualize
BU of 6bq8 by Molmil
Joint X-ray/neutron structure of PKG II CNB-B domain in complex with 8-pCPT-cGMP
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-(~2~H_2_)amino-8-[(4-chlorophenyl)sulfanyl]-9-[(2S,4aR,6R,7R,7aS)-2-hydroxy-7-(~2~H)hydroxy-2-oxotetrahydro-2H,4H-2lambda~5~-furo[3,2-d][1,3,2]dioxaphosphinin-6-yl](~2~H)-1,9-dihydro-6H-purin-6-one, STRONTIUM ION, ...
Authors:Kim, C, Kovalevsky, A, Gerlits, O.
Deposit date:2017-11-27
Release date:2018-03-21
Last modified:2024-04-03
Method:NEUTRON DIFFRACTION (2 Å), X-RAY DIFFRACTION
Cite:Neutron Crystallography Detects Differences in Protein Dynamics: Structure of the PKG II Cyclic Nucleotide Binding Domain in Complex with an Activator.
Biochemistry, 57, 2018
6BRQ
DownloadVisualize
BU of 6brq by Molmil
Crystal structure of rice ASK1-D3 ubiquitin ligase complex crystal form 3
Descriptor: F-box/LRR-repeat MAX2 homolog, SKP1-like protein 1A
Authors:Shabek, N, Zheng, N, Mao, H, Hinds, T.R, Ticchiarelli, F, Leyser, O.
Deposit date:2017-11-30
Release date:2018-11-21
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:Structural plasticity of D3-D14 ubiquitin ligase in strigolactone signalling.
Nature, 563, 2018
3HZ1
DownloadVisualize
BU of 3hz1 by Molmil
Crystal structure of Hsp90 with fragments 37-D04 and 42-C03
Descriptor: Heat shock protein HSP 90-alpha, N,N-dimethyl-7H-purin-6-amine, methyl 5-furan-2-yl-3-methyl-1H-pyrazole-4-carboxylate
Authors:Barker, J, Mather, O, Cheng, R.K.Y, Palan, S, Felicetti, B, Whittaker, M.
Deposit date:2009-06-23
Release date:2010-07-14
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of Hsp90 with fragments 37-D04 and 42-C03
TO BE PUBLISHED
3HYY
DownloadVisualize
BU of 3hyy by Molmil
Crystal structure of Hsp90 with fragment 37-D04
Descriptor: Heat shock protein HSP 90-alpha, methyl 5-furan-2-yl-3-methyl-1H-pyrazole-4-carboxylate
Authors:Barker, J, Mather, O, Cheng, R.K.Y, Palan, S, Felicetti, B, Whittaker, M.
Deposit date:2009-06-23
Release date:2010-07-14
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of Hsp90 with fragment 37-D04
TO BE PUBLISHED

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon