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PDB: 762 results

3K17
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Crystal structure of a Lin0012 protein from Listeria innocua
Descriptor: Lin0012 protein, TRIETHYLENE GLYCOL
Authors:Palani, K, Burley, S.K, Swaminathan, S, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2009-09-25
Release date:2009-10-06
Last modified:2021-02-10
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of a Lin0012 protein from Listeria innocua
To be Published
3K85
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Crystal structure of a D-glycero-D-manno-heptose 1-phosphate kinase from Bacteriodes thetaiotaomicron
Descriptor: D-glycero-D-manno-heptose 1-phosphate kinase
Authors:Palani, K, Kumaran, D, Burley, S.K, Swaminathan, S, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2009-10-13
Release date:2009-12-08
Last modified:2021-02-10
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Crystal structure of a D-glycero-D-manno-heptose 1-phosphate kinase from Bacteriodes thetaiotaomicron
To be Published
3K9E
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BU of 3k9e by Molmil
Crystal structure of a putative Ribokinase II (Apo Form) from E.coli
Descriptor: PUTATIVE RIBOKINASE II
Authors:Satyanarayana, L, Burley, S.K, Swaminathan, S, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2009-10-15
Release date:2009-11-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure of a putative Ribokinase II (Apo Form) from E.coli
To be Published
3JQW
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Crystal structure of Clostridium histolyticum colH collagenase collagen-binding domain 3 at 2 Angstrom resolution in presence of calcium
Descriptor: CALCIUM ION, ColH protein
Authors:Sakon, J, Philominathan, S.T.L, Matsushita, O, Bauer, R.
Deposit date:2009-09-08
Release date:2010-09-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Comparison of ColH and ColG Collagen-Binding Domains from Clostridium histolyticum.
J.Bacteriol., 195, 2013
3JQX
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Crystal structure of Clostridium histolyticum colH collagenase collagen binding domain 3 at 2.2 Angstrom resolution in the presence of calcium and cadmium
Descriptor: CADMIUM ION, CALCIUM ION, ColH protein
Authors:Sakon, J, Philominathan, S.T.L, Bauer, R, Matsushita, O.
Deposit date:2009-09-08
Release date:2010-09-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Comparison of ColH and ColG Collagen-Binding Domains from Clostridium histolyticum.
J.Bacteriol., 195, 2013
4UXN
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BU of 4uxn by Molmil
LSD1(KDM1A)-CoREST in complex with Z-Pro derivative of MC2580
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A, REST COREPRESSOR 1, ...
Authors:Rodriguez, V, Valente, S, Stazi, G, Lucidi, A, Mercurio, C, Vianello, P, Ciossani, G, Mattevi, A, Botrugno, O.A, Dessanti, P, Minucci, S, Varasi, M, Mai, A.
Deposit date:2014-08-27
Release date:2015-02-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Pyrrole- and Indole-Containing Tranylcypromine Derivatives as Novel Lysine-Specific Demethylase 1 Inhibitors Active on Cancer Cells
Chemmedchem, 6, 2015
4UV9
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LSD1(KDM1A)-CoREST in complex with 1-Ethyl-Tranylcypromine
Descriptor: LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A, REST COREPRESSOR 1, [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3S,4S)-2,3,4-trihydroxy-5-[(4aS,10aS)-4a-[(1S,3E)-3-imino-1-phenylpentyl]-7,8-dimethyl-2,4-dioxo-1,3,4,4a,5,10a-hexahydrobenzo[g]pteridin-10(2H)-yl]pentyl dihydrogen diphosphate
Authors:Vianello, P, Botrugno, O, Cappa, A, Ciossani, G, Dessanti, P, Mai, A, Mattevi, A, Meroni, G, Minucci, S, Thaler, F, Tortorici, M, Trifiro, P, Valente, S, Villa, M, Varasi, M, Mercurio, C.
Deposit date:2014-08-05
Release date:2014-09-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3 Å)
Cite:Synthesis, Biological Activity and Mechanistic Insights of 1-Substituted Cyclopropylamine Derivatives: A Novel Class of Irreversible Inhibitors of Histone Demethylase Kdm1A.
Eur.J.Med.Chem., 86C, 2014
4UVB
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LSD1(KDM1A)-CoREST in complex with 1-Methyl-Tranylcypromine (1S,2R)
Descriptor: LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A, REST COREPRESSOR 1, [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3S,4S)-5-[(1R,3S,3aS,7aS)-1-amino-1,10,11-trimethyl-4,6-dioxo-3-phenyl-2,3,5,6,7,7a-hexahydro-1H-benzo[g]pyrrolo[2,1-e]pteridin-8(4H)-yl]-2,3,4-trihydroxypentyl dihydrogen diphosphate
Authors:Vianello, P, Botrugno, O, Cappa, A, Ciossani, G, Dessanti, P, Mai, A, Mattevi, A, Meroni, G, Minucci, S, Thaler, F, Tortorici, M, Trifiro, P, Valente, S, Villa, M, Varasi, M, Mercurio, C.
Deposit date:2014-08-05
Release date:2014-09-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Synthesis, Biological Activity and Mechanistic Insights of 1-Substituted Cyclopropylamine Derivatives: A Novel Class of Irreversible Inhibitors of Histone Demethylase Kdm1A.
Eur.J.Med.Chem., 86C, 2014
4UVC
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BU of 4uvc by Molmil
LSD1(KDM1A)-CoREST in complex with 1-Phenyl-Tranylcypromine
Descriptor: LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A, REST COREPRESSOR 1, [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4S)-5-[5-[(1S)-1-azanyl-1,3-diphenyl-propyl]-7,8-dimethyl-2,4-bis(oxidanylidene)-4aH-benzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentyl] hydrogen phosphate
Authors:Vianello, P, Botrugno, O, Cappa, A, Ciossani, G, Dessanti, P, Mai, A, Mattevi, A, Meroni, G, Minucci, S, Thaler, F, Tortorici, M, Trifiro, P, Valente, S, Villa, M, Varasi, M, Mercurio, C.
Deposit date:2014-08-05
Release date:2014-09-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Synthesis, Biological Activity and Mechanistic Insights of 1-Substituted Cyclopropylamine Derivatives: A Novel Class of Irreversible Inhibitors of Histone Demethylase Kdm1A.
Eur.J.Med.Chem., 86C, 2014
4DRY
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BU of 4dry by Molmil
The crystal structure of 3-oxoacyl-[acyl-carrier-protein] reductase from Rhizobium meliloti
Descriptor: 3-oxoacyl-[acyl-carrier-protein] reductase, SULFATE ION
Authors:Zhang, Z, Chamala, S, Evans, B, Foti, R, Gizzi, A, Hillerich, B, Kar, A, LaFleur, J, Seidel, R, Villigas, G, Zencheck, W, Almo, S.C, Swaminathan, S, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2012-02-17
Release date:2012-02-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The crystal structure of 3-oxoacyl-[acyl-carrier-protein] reductase from Rhizobium meliloti
To be Published
4DU5
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BU of 4du5 by Molmil
Crystal structure of PfkB protein from Polaromonas sp. JS666
Descriptor: CHLORIDE ION, PfkB
Authors:Agarwal, R, Chamala, S, Evans, B, Foti, R, Gizzi, A, Hellerich, B, Kar, A, Lafleur, J, Siedel, R, Villigas, G, Zencheck, W, Almo, S.C, Swaminathan, S, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2012-02-21
Release date:2012-03-21
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of PfkB protein from Polaromonas sp. JS666
To be Published
4DPO
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BU of 4dpo by Molmil
Crystal structure of a conserved protein MM_1583 from Methanosarcina mazei Go1
Descriptor: Conserved protein
Authors:Agarwal, R, Chamala, S, Evans, R, Gizzi, A, Hillerich, B, Kar, A, LaFleur, J, Foti, R, Siedel, R, Zencheck, W, Villigas, G, Almo, S.C, Swaminathan, S, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2012-02-13
Release date:2012-02-29
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.73 Å)
Cite:Crystal structure of a conserved protein MM_1583 from Methanosarcina mazei Go1
To be Published
4DQX
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BU of 4dqx by Molmil
Crystal structure of a short chain dehydrogenase from Rhizobium etli CFN 42
Descriptor: Probable oxidoreductase protein
Authors:Agarwal, R, Chamala, S, Evans, B, Foti, R, Gizzi, A, Hillerich, B, Kar, A, LaFleur, J, Siedel, R, Villigas, G, Zencheck, W, Almo, S.C, Swaminathan, S, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2012-02-16
Release date:2012-02-29
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a short chain dehydrogenase from Rhizobium etli CFN 42
To be Published
4DIO
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BU of 4dio by Molmil
The crystal structure of transhydrogenase from Sinorhizobium meliloti
Descriptor: NAD(P) transhydrogenase subunit alpha part 1
Authors:Zhang, Z, Chamala, S, Evans, B, Foti, R, Gizzi, A, Hillerich, B, Kar, A, Lafleur, J, Seidel, R, Villigas, G, Zencheck, W, Almo, S.C, Swaminathan, S, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2012-01-31
Release date:2012-03-21
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The crystal structure of transhydrogenase from Sinorhizobium meliloti
To be Published
3SC2
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BU of 3sc2 by Molmil
REFINED ATOMIC MODEL OF WHEAT SERINE CARBOXYPEPTIDASE II AT 2.2-ANGSTROMS RESOLUTION
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, SERINE CARBOXYPEPTIDASE II (CPDW-II), alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Liao, D.-I, Remington, S.J.
Deposit date:1992-07-01
Release date:1993-10-31
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Refined atomic model of wheat serine carboxypeptidase II at 2.2-A resolution.
Biochemistry, 31, 1992
3SSZ
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BU of 3ssz by Molmil
The crystal structure of Mandelate racemase/muconate lactonizing enzyme from Rhodobacteraceae bacterium
Descriptor: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein, SULFATE ION
Authors:Zhang, Z, Chamala, S, Evans, B, Foti, R, Gizzi, A, Hillerich, B, Kar, A, LaFleur, J, Seidel, R, Villigas, G, Zencheck, W, Almo, S.C, Swaminathan, S, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2011-07-08
Release date:2011-08-17
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.392 Å)
Cite:The crystal structure of Mandelate racemase/muconate lactonizing enzyme from Rhodobacteraceae bacterium
To be Published
3T4W
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BU of 3t4w by Molmil
The crystal structure of mandelate racemase/muconate lactonizing enzyme from Sulfitobacter sp
Descriptor: Mandelate racemase/muconate lactonizing enzyme family protein
Authors:Zhang, Z, Chamala, S, Evans, B, Foti, R, Gizzi, A, Hillerich, B, Kar, A, LaFleur, J, Seidel, R, Villigas, G, Zencheck, W, Almo, S.C, Swaminathan, S, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2011-07-26
Release date:2011-08-17
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.522 Å)
Cite:The crystal structure of mandelate racemase/muconate lactonizing enzyme from Sulfitobacter sp
To be Published
3SMD
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Crystal structure of a mut/nudix family protein from bacillus thuringiensis
Descriptor: MutT/NUDIX family protein
Authors:Palani, K, Kumaran, D, Burley, S.K, Swaminathan, S, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2011-06-27
Release date:2011-07-20
Last modified:2021-02-10
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Crystal structure of a mut/nudix family protein from bacillus thuringiensis
To be Published
4M1A
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BU of 4m1a by Molmil
Crystal structure of a Domain of unknown function (DUF1904) from Sebaldella termitidis ATCC 33386
Descriptor: Hypothetical protein
Authors:Kumaran, D, Chamala, S, Evans, B, Foti, R, Gizzi, A, Hillerich, B, Kar, A, Lafleur, J, Seidel, R, Villigas, G, Zencheck, W, Al Obaidi, N, Almo, S.C, Swaminathan, S, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2013-08-02
Release date:2013-08-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of a Domain of unknown function (DUF1904) from Sebaldellatermitidis ATCC 33386
To be Published
4M1V
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BU of 4m1v by Molmil
Crystal structure of the ancestral soluble variant of the Human Phosphate Binding Protein (HPBP)
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, GLYCEROL, ...
Authors:Gonzalez, D, Hiblot, J, Darbinian, N, Miller, J.S, Gotthard, G, Amini, S, Chabriere, E, Elias, M.
Deposit date:2013-08-04
Release date:2014-01-01
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Ancestral mutations as a tool for solubilizing proteins: The case of a hydrophobic phosphate-binding protein.
FEBS Open Bio, 4, 2014
4RYL
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BU of 4ryl by Molmil
Human Protein Arginine Methyltransferase 3 in complex with 1-isoquinolin-6-yl-3-[2-oxo-2-(pyrrolidin-1-yl)ethyl]urea
Descriptor: 1-isoquinolin-6-yl-3-[2-oxo-2-(pyrrolidin-1-yl)ethyl]urea, PRMT3 protein, UNKNOWN ATOM OR ION
Authors:Dong, A, Dobrovetsky, E, Kaniskan, H.U, Szewczyk, M, Yu, Z, Eram, M.S, Yang, X, Schmidt, K, Luo, X, Dai, M, He, F, Zang, I, Lin, Y, Kennedy, S, Li, F, Tempel, W, Smil, D, Min, S.J, Landon, M, Lin-Jones, J, Huang, X.P, Roth, B.L, Schapira, M, Atadja, P, Barsyte-Lovejoy, D, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Brown, P.J, Zhao, K, Jin, J, Vedadi, M, Structural Genomics Consortium (SGC)
Deposit date:2014-12-15
Release date:2015-02-25
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A Potent, Selective and Cell-Active Allosteric Inhibitor of Protein Arginine Methyltransferase 3 (PRMT3).
Angew.Chem.Int.Ed.Engl., 54, 2015
3B59
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BU of 3b59 by Molmil
Crystal structure of the Mn(II)-bound glyoxalase from Novosphingobium aromaticivorans
Descriptor: Glyoxalase/bleomycin resistance protein/dioxygenase, MANGANESE (II) ION
Authors:Madegowda, M, Eswaramoorthy, S, Burley, S.K, Swaminathan, S, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-10-25
Release date:2007-11-06
Last modified:2021-02-03
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Crystal structure of the Mn(II)-bound glyoxalase from Novosphingobium aromaticivorans.
To be Published
3B89
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BU of 3b89 by Molmil
Crystal structure of rRNA methylase from Escherichia coli
Descriptor: 16S rRNA methylase, GUANOSINE-5'-MONOPHOSPHATE
Authors:Eswaramoorthy, S, Burley, S.K, Swaminathan, S, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-10-31
Release date:2007-11-27
Last modified:2021-02-03
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of rRNA methylase from Escherichia coli.
To be Published
3BE3
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BU of 3be3 by Molmil
Crystal structure of a protein belonging to pfam DUF1653 from Bordetella bronchiseptica
Descriptor: SULFATE ION, Uncharacterized protein
Authors:Tyagi, R, Eswaramoorthy, S, Burley, S.K, Swaminathan, S, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-11-16
Release date:2007-11-27
Last modified:2021-02-03
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Crystal structure of a protein belonging to pfam DUF1653 from Bordetella bronchiseptica.
To be Published
2PAJ
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BU of 2paj by Molmil
Crystal structure of an amidohydrolase from an environmental sample of Sargasso sea
Descriptor: ZINC ION, putative cytosine/guanine deaminase
Authors:Agarwal, R, Burley, S.K, Swaminathan, S, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-03-27
Release date:2007-04-03
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Discovery and structure determination of the orphan enzyme isoxanthopterin deaminase.
Biochemistry, 49, 2010

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