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PDB: 162 results

1BX4
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BU of 1bx4 by Molmil
STRUCTURE OF HUMAN ADENOSINE KINASE AT 1.50 ANGSTROMS
Descriptor: ADENOSINE, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Mathews, I.I, Erion, M.D, Ealick, S.E.
Deposit date:1998-10-13
Release date:1999-10-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure of human adenosine kinase at 1.5 A resolution.
Biochemistry, 37, 1998
1FPC
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BU of 1fpc by Molmil
ACTIVE SITE MIMETIC INHIBITION OF THROMBIN
Descriptor: Hirudin, amino{[(4S)-4-({[5-(dimethylamino)naphthalen-1-yl]sulfonyl}amino)-5-(4-ethylpiperidin-1-yl)-5-oxopentyl]amino}methaniminium, thrombin
Authors:Tulinsky, A, Mathews, I.I.
Deposit date:1994-10-16
Release date:1995-02-27
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Active-site mimetic inhibition of thrombin.
Acta Crystallogr.,Sect.D, 51, 1995
8VTO
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BU of 8vto by Molmil
Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-methylphenylalanine
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CARDIOLIPIN, ...
Authors:Tran, K, Mathews, I, Boxer, S.G.
Deposit date:2024-01-26
Release date:2024-03-13
Method:X-RAY DIFFRACTION (3.09 Å)
Cite:Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-methylphenylalanine
To Be Published
7SH1
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BU of 7sh1 by Molmil
Class II UvrA protein - Ecm16
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, Excinuclease ABC subunit UvrA, ...
Authors:Grade, P, Erlandson, A, Ullah, A, Mathews, I.I, Chen, X, Kim, C.-Y, Mera, P.E.
Deposit date:2021-10-07
Release date:2022-10-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Structural and functional analyses of the echinomycin resistance conferring protein Ecm16 from Streptomyces lasalocidi.
Sci Rep, 13, 2023
8T3P
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BU of 8t3p by Molmil
Crystal structure of MonC1 (a flavin-dependent monooxygenase)
Descriptor: CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, MonCI
Authors:Wang, Q, Mathews, I.I, Kim, C.Y.
Deposit date:2023-06-07
Release date:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Triepoxide formation by a flavin-dependent monooxygenase in monensin biosynthesis.
Nat Commun, 14, 2023
8VTL
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BU of 8vtl by Molmil
Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-methoxyphenylalanine
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CARDIOLIPIN, ...
Authors:Tran, K, Mathews, I, Boxer, S.G.
Deposit date:2024-01-26
Release date:2024-03-13
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-methoxyphenylalanine
To Be Published
8VTM
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BU of 8vtm by Molmil
Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-bromophenylalanine
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CARDIOLIPIN, ...
Authors:Tran, K, Mathews, I, Boxer, S.G.
Deposit date:2024-01-26
Release date:2024-03-13
Method:X-RAY DIFFRACTION (3.51 Å)
Cite:Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-bromophenylalanine
To Be Published
8VTN
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BU of 8vtn by Molmil
Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-nitrophenylalanine
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CARDIOLIPIN, ...
Authors:Tran, K, Mathews, I, Boxer, S.G.
Deposit date:2024-01-26
Release date:2024-03-13
Method:X-RAY DIFFRACTION (3.57 Å)
Cite:Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant Y(M210)2-nitrophenylalanine
To Be Published
8VTK
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BU of 8vtk by Molmil
Crystal structure of R.sphaeroides Photosynthetic Reaction Center variant Y(M210)2-chlorophenylalanine
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CARDIOLIPIN, ...
Authors:Tran, K, Mathews, I, Boxer, S.G.
Deposit date:2024-01-26
Release date:2024-03-13
Method:X-RAY DIFFRACTION (3.07 Å)
Cite:Crystal structure of R.sphaeroides Photosynthetic Reaction Center variant Y(M210)2-chlorophenylalanine
To Be Published
4D8P
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BU of 4d8p by Molmil
Structural and functional studies of the trans-encoded HLA-DQ2.3 (DQA1*03:01/DQB1*02:01) molecule
Descriptor: GLYCEROL, HLA-DQA1 protein, Peptide from Gamma-gliadin,HLA class II histocompatibility antigen, ...
Authors:Kim, C.-Y, Hotta, K, Mathews, I.I, Chen, X.
Deposit date:2012-01-11
Release date:2012-03-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Structural and functional studies of trans-encoded HLA-DQ2.3 (DQA1*03:01/DQB1*02:01) protein molecule
J.Biol.Chem., 287, 2012
2ATE
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BU of 2ate by Molmil
Structure of the complex of PurE with NitroAIR
Descriptor: ((2R,3S,4R,5R)-5-(5-AMINO-4-NITRO-1H-IMIDAZOL-1-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL)METHYL DIHYDROGEN PHOSPHATE, Phosphoribosylaminoimidazole carboxylase catalytic subunit
Authors:Kappock, T.J, Mathews, I.I, Zaugg, J.B, Peng, P, Hoskins, A.A, Okamoto, A, Ealick, S.E, Stubbe, J.
Deposit date:2005-08-24
Release date:2006-08-29
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:N5-CAIR mutase: role of a CO2 binding site and substrate movement in catalysis.
Biochemistry, 46, 2007
1HLT
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BU of 1hlt by Molmil
THE STRUCTURE OF A NONADECAPEPTIDE OF THE FIFTH EGF DOMAIN OF THROMBOMODULIN COMPLEXED WITH THROMBIN
Descriptor: ALPHA-THROMBIN (LARGE SUBUNIT), ALPHA-THROMBIN (SMALL SUBUNIT), D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide, ...
Authors:Tulinsky, A, Mathews, I.I.
Deposit date:1994-08-28
Release date:1994-12-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of a nonadecapeptide of the fifth EGF domain of thrombomodulin complexed with thrombin.
Biochemistry, 33, 1994
2BKL
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BU of 2bkl by Molmil
Structural and Mechanistic Analysis of Two Prolyl Endopeptidases: Role of Inter-Domain Dynamics in Catalysis and Specificity
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, N-[(BENZYLOXY)CARBONYL]-L-ALANYL-L-PROLINE, PROLYL ENDOPEPTIDASE, ...
Authors:Khosla, C, Shan, L, Mathews, I.I.
Deposit date:2005-02-16
Release date:2005-03-09
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural and Mechanistic Analysis of Two Prolyl Endopeptidases: Role of Interdomain Dynamics in Catalysis and Specificity
Proc.Natl.Acad.Sci.USA, 102, 2005
7T2U
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BU of 7t2u by Molmil
SARS-CoV2 3C-Like protease complexed with Nemo peptide
Descriptor: 3C-Like Protease, NEMO peptide
Authors:Wakatsuki, S, Mathews, I.I, Hameedi, M.A.
Deposit date:2021-12-06
Release date:2022-09-14
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and functional characterization of NEMO cleavage by SARS-CoV-2 3CLpro.
Nat Commun, 13, 2022
7SQL
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BU of 7sql by Molmil
Crystal structure of human uridine-cytidine kinase 2 complexed with a weak small molecule inhibitor
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, N-(4-bromophenyl)-2-{[1-(4-fluorophenyl)-4-oxo-4,5-dihydro-1H-pyrazolo[3,4-d]pyrimidin-6-yl]sulfanyl}acetamide, ...
Authors:Mashayekh, S, Stunkard, L.M, Kienle, M, Mathews, I.I, Khosla, C.
Deposit date:2021-11-05
Release date:2022-10-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure-Based Prototyping of Allosteric Inhibitors of Human Uridine/Cytidine Kinase 2 (UCK2).
Biochemistry, 61, 2022
7U6Q
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BU of 7u6q by Molmil
TEM-1 beta-lactamase
Descriptor: Beta-lactamase, SULFATE ION
Authors:Ji, Z, Boxer, S.G, Mathews, I.I.
Deposit date:2022-03-04
Release date:2022-09-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Protein Electric Fields Enable Faster and Longer-Lasting Covalent Inhibition of beta-Lactamases.
J.Am.Chem.Soc., 144, 2022
7MHA
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BU of 7mha by Molmil
Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant; W252V mutant
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CARDIOLIPIN, ...
Authors:Boxer, S.G, Mathews, I.I, Weaver, J.B.
Deposit date:2021-04-14
Release date:2022-04-27
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Photosynthetic reaction center variants made via genetic code expansion indicate tyrosine at M210 tunes the mechanism for primary electron transfer
Thesis Ph.D. Stanford University, 2022
3HAT
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BU of 3hat by Molmil
ACTIVE SITE MIMETIC INHIBITION OF THROMBIN
Descriptor: FPAM (FIBRINOPEPTIDE A MIMIC), Hirudin variant-2, Thrombin heavy chain, ...
Authors:Tulinsky, A, Mathews, I.I.
Deposit date:1994-10-16
Release date:1995-02-27
Last modified:2024-04-24
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Active-site mimetic inhibition of thrombin.
Acta Crystallogr.,Sect.D, 51, 1995
6C9U
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BU of 6c9u by Molmil
Crystal structure of [KS3][AT3] didomain from module 3 of 6-deoxyerthronolide B synthase in complex with antibody fragment (Fab)
Descriptor: 6-deoxyerythronolide-B synthase EryA2, modules 3 and 4, Heavy chain of Fab 1B2, ...
Authors:Deis, L.N, Li, X, Mathews, I.I, Khosla, C.
Deposit date:2018-01-28
Release date:2018-05-23
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Structure-Function Analysis of the Extended Conformation of a Polyketide Synthase Module.
J. Am. Chem. Soc., 140, 2018
4RA0
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BU of 4ra0 by Molmil
An engineered Axl 'decoy receptor' effectively silences the Gas6-Axl signaling axis
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, CHLORIDE ION, ...
Authors:Kariolis, M.S, Kapur, S, Mathews, I.I, Cochran, J.R.
Deposit date:2014-09-09
Release date:2014-09-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.07 Å)
Cite:An engineered Axl 'decoy receptor' effectively silences the Gas6-Axl signaling axis.
Nat.Chem.Biol., 10, 2014
4RDS
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BU of 4rds by Molmil
Lysozyme crystallized with red food coloring dye
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Lysozyme C, ...
Authors:Irimpan, E.M, Mathews, I.I.
Deposit date:2014-09-19
Release date:2015-01-14
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.23 Å)
Cite:Lysozyme crystallized with red food coloring dye.
To be Published
6APM
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BU of 6apm by Molmil
Hen egg-white lysozyme (WT), solved with serial millisecond crystallography using synchrotron radiation
Descriptor: Lysozyme C, SODIUM ION
Authors:Lyubimov, A.Y, Mathews, I.I, Uervivojnangkoorn, M, Soltis, S.M, Cohen, A.E.
Deposit date:2017-08-17
Release date:2018-04-04
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The Conformational Flexibility of the Acyltransferase from the Disorazole Polyketide Synthase Is Revealed by an X-ray Free-Electron Laser Using a Room-Temperature Sample Delivery Method for Serial Crystallography.
Biochemistry, 56, 2017
6APK
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BU of 6apk by Molmil
Trans-acting transferase from Disorazole synthase solved by serial femtosecond XFEL crystallography
Descriptor: DisD protein
Authors:Lyubimov, A.Y, Mathews, I.I, Uervivojnangkoorn, M, Khosla, C, Soltis, S.M, Cohen, A.E.
Deposit date:2017-08-17
Release date:2018-04-04
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The Conformational Flexibility of the Acyltransferase from the Disorazole Polyketide Synthase Is Revealed by an X-ray Free-Electron Laser Using a Room-Temperature Sample Delivery Method for Serial Crystallography.
Biochemistry, 56, 2017
6WH9
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BU of 6wh9 by Molmil
Ketoreductase from module 1 of the 6-deoxyerythronolide B synthase (KR1) in complex with antibody fragment (Fab) 1D10
Descriptor: 1D10 (Fab heavy chain), 1D10 (Fab light chain), KR1, ...
Authors:Cogan, D.P, Mathews, I.I, Khosla, C.
Deposit date:2020-04-07
Release date:2020-09-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Antibody Probes of Module 1 of the 6-Deoxyerythronolide B Synthase Reveal an Extended Conformation During Ketoreduction.
J.Am.Chem.Soc., 142, 2020
6V2J
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BU of 6v2j by Molmil
Crystal structure of ClC-ec1 triple mutant (E113Q, E148Q, E203Q)
Descriptor: CHLORIDE ION, H(+)/Cl(-) exchange transporter ClcA
Authors:Maduke, M, Mathews, I.I, Chavan, T.S.
Deposit date:2019-11-24
Release date:2020-05-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:A CLC-ec1 mutant reveals global conformational change and suggests a unifying mechanism for the CLC Cl - /H + transport cycle.
Elife, 9, 2020

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