Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 51630 results

7A6H
DownloadVisualize
BU of 7a6h by Molmil
Cryo-EM structure of human apo RNA Polymerase III
Descriptor: DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, DNA-directed RNA polymerase III subunit RPC2, ...
Authors:Girbig, M, Misiaszek, A.D, Vorlaender, M.K, Mueller, C.W.
Deposit date:2020-08-25
Release date:2021-02-03
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cryo-EM structures of human RNA polymerase III in its unbound and transcribing states.
Nat.Struct.Mol.Biol., 28, 2021
7A62
DownloadVisualize
BU of 7a62 by Molmil
Structure of human indoleamine-2,3-dioxygenase 1 (hIDO1) with a complete JK loop
Descriptor: CHLORIDE ION, GLYCEROL, Indoleamine 2,3-dioxygenase 1, ...
Authors:Mirgaux, M, Wouters, J.
Deposit date:2020-08-24
Release date:2020-12-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.43796444 Å)
Cite:Influence of the presence of the heme cofactor on the JK-loop structure in indoleamine 2,3-dioxygenase 1.
Acta Crystallogr D Struct Biol, 76, 2020
7AAA
DownloadVisualize
BU of 7aaa by Molmil
Crystal structure of the catalytic domain of human PARP1 (apo)
Descriptor: 1,2-ETHANEDIOL, DIMETHYL SULFOXIDE, Poly [ADP-ribose] polymerase 1, ...
Authors:Schimpl, M, Ogden, T.E.H, Yang, J.-C, Underwood, E, Rawlins, P.B, Johannes, J.W, Easton, L.E, Embrey, K.J, Neuhaus, D.
Deposit date:2020-09-04
Release date:2021-01-13
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Dynamics of the HD regulatory subdomain of PARP-1; substrate access and allostery in PARP activation and inhibition.
Nucleic Acids Res., 49, 2021
7ACG
DownloadVisualize
BU of 7acg by Molmil
In meso structure of the alginate exporter, AlgE, from Pseudomonas aeruginosa in 9.8 monoacylglycerol
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, 2-(2-METHOXYETHOXY)ETHANOL, Alginate biosynthesis protein AlgE, ...
Authors:Smithers, L, van Dalsen, L, Boland, C, Caffrey, M.
Deposit date:2020-09-10
Release date:2020-12-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:9.8 MAG. A new host lipid for in meso (lipid cubic phase) crystallization of integral membrane proteins
Cryst.Growth Des., 2020
6ZS4
DownloadVisualize
BU of 6zs4 by Molmil
Crystal structure of the fifth bromodomain of human protein polybromo-1 in complex with tert-butyl 4-[3-amino-6-(2-hydroxyphenyl)pyridazin-4-yl]piperazine-1-carboxylate
Descriptor: 1,2-ETHANEDIOL, Protein polybromo-1, tert-butyl 4-[3-amino-6-(2-hydroxyphenyl)pyridazin-4-yl]piperazine-1-carboxylate
Authors:Preuss, F, Joerger, A.C, Kraemer, A, Wanior, M, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2020-07-15
Release date:2020-10-07
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2 Å)
Cite:Pan-SMARCA/PB1 Bromodomain Inhibitors and Their Role in Regulating Adipogenesis.
J.Med.Chem., 63, 2020
4QC9
DownloadVisualize
BU of 4qc9 by Molmil
Crystal structure of Vaccinia virus uracil-DNA glycosylase mutant 3GD4
Descriptor: 1,2-ETHANEDIOL, SULFATE ION, Uracil-DNA glycosylase
Authors:Sartmatova, D, Nash, T, Schormann, N, Nuth, M, Ricciardi, R, Banerjee, S, Chattopadhyay, D.
Deposit date:2014-05-09
Release date:2015-05-13
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.259 Å)
Cite:Crystal structure of Vaccinia virus uracil-DNA glycosylase mutant 3GD4
To be Published
3D75
DownloadVisualize
BU of 3d75 by Molmil
Crystal structure of a pheromone binding protein mutant D35N, from Apis mellifera, at pH 5.5
Descriptor: N-BUTYL-BENZENESULFONAMIDE, Pheromone-binding protein ASP1
Authors:Pesenti, M.E, Spinelli, S, Bezirard, V, Briand, L, Pernollet, J.C, Tegoni, M, Cambillau, C.
Deposit date:2008-05-20
Release date:2009-05-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Queen bee pheromone binding protein pH-induced domain swapping favors pheromone release
J.Mol.Biol., 390, 2009
3CI3
DownloadVisualize
BU of 3ci3 by Molmil
Structure of the PduO-type ATP:co(I)rrinoid adenosyltransferase from Lactobacillus reuteri complexed with partial adenosylcobalamin and PPPi
Descriptor: 5'-DEOXYADENOSINE, COBALAMIN, Cobalamin adenosyltransferase PduO-like protein, ...
Authors:Maurice, M.St, Mera, P.E, Escalante-Semerena, J.C, Rayment, I.
Deposit date:2008-03-10
Release date:2008-05-27
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.11 Å)
Cite:Structural characterization of a human-type corrinoid adenosyltransferase confirms that coenzyme B12 is synthesized through a four-coordinate intermediate.
Biochemistry, 47, 2008
3E2L
DownloadVisualize
BU of 3e2l by Molmil
Crystal Structure of the KPC-2 Beta-lactamase/Beta-lactamase inhibitor protein (BLIP)
Descriptor: Beta-lactamase inhibitory protein, Carbapenemase
Authors:Hanes, M.S, Jude, K.M, Berger, J.M, Kirsch, J.F, Bonomo, R.A, Handel, T.M.
Deposit date:2008-08-05
Release date:2009-08-04
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Structural and biochemical characterization of the interaction between KPC-2 beta-lactamase and beta-lactamase inhibitor protein
Biochemistry, 48, 2009
3EN0
DownloadVisualize
BU of 3en0 by Molmil
The Structure of Cyanophycinase
Descriptor: Cyanophycinase, SULFATE ION
Authors:Kimber, M.S, Law, A.M, Lai, S.W.S, Tavares, J.
Deposit date:2008-09-25
Release date:2009-07-28
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The structural basis of beta-peptide-specific cleavage by the serine protease cyanophycinase.
J.Mol.Biol., 392, 2009
3EL8
DownloadVisualize
BU of 3el8 by Molmil
Crystal structure of c-Src in complex with pyrazolopyrimidine 5
Descriptor: 1-{4-[4-amino-1-(1-methylethyl)-1H-pyrazolo[3,4-d]pyrimidin-3-yl]phenyl}-3-[3-(trifluoromethyl)phenyl]urea, Proto-oncogene tyrosine-protein kinase Src
Authors:Dar, A.C, Lopez, M.S, Shokat, K.M.
Deposit date:2008-09-20
Release date:2008-10-28
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Small molecule recognition of c-Src via the Imatinib-binding conformation.
Chem.Biol., 15, 2008
4Q0V
DownloadVisualize
BU of 4q0v by Molmil
Crystal structure of Acinetobacter sp. DL28 L-ribose isomerase mutant E204Q in complex with L-ribulose
Descriptor: COBALT (II) ION, COBALT HEXAMMINE(III), L-Ribose isomerase, ...
Authors:Yoshida, H, Yoshihara, A, Teraoka, M, Izumori, K, Kamitori, S.
Deposit date:2014-04-02
Release date:2014-05-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:X-ray structure of a novel L-ribose isomerase acting on a non-natural sugar L-ribose as its ideal substrate.
Febs J., 281, 2014
3DTV
DownloadVisualize
BU of 3dtv by Molmil
Crystal structure of arylmalonate decarboxylase
Descriptor: Arylmalonate decarboxylase, BETA-MERCAPTOETHANOL, GLYCEROL, ...
Authors:Nakasako, M, Obata, R, Miyamaoto, K, Ohta, H.
Deposit date:2008-07-16
Release date:2009-07-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Basis for Inverting the Enantioselectivity of Arylmalonate Decarboxylase Revealed by the Structural Analysis of the Gly74Cys/Cys188Ser Mutant in the Liganded Form
Biochemistry, 49, 2010
4QF8
DownloadVisualize
BU of 4qf8 by Molmil
Crystal Structure of the Complex of Phospholipase A2 with Spermidine at 1.65 A Resolution
Descriptor: Phospholipase A2 VRV-PL-VIIIa, SPERMIDINE, SULFATE ION
Authors:Shukla, P.K, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2014-05-20
Release date:2014-06-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structures and binding studies of the complexes of phospholipase A2 with five inhibitors
Biochim.Biophys.Acta, 1854, 2015
4QEM
DownloadVisualize
BU of 4qem by Molmil
Crystal structure of the complex of Phospholipase A2 With P-Coumaric Acid At 1.2 A Resolution
Descriptor: 4'-HYDROXYCINNAMIC ACID, Phospholipase A2 VRV-PL-VIIIa, SULFATE ION
Authors:Shukla, P.K, Tiwari, P, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2014-05-17
Release date:2014-06-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structures and binding studies of the complexes of phospholipase A2 with five inhibitors
Biochim.Biophys.Acta, 1854, 2015
4QEW
DownloadVisualize
BU of 4qew by Molmil
Crystal structure of BRD2(BD2) mutant with ligand ET bound (METHYL (2R)- 2-[(4S)-6-(4-CHLOROPHENYL)-8-METHOXY-1-METHYL-4H-[1,2,4]TRIAZOLO[4,3-A][1, 4]BENZODIAZEPIN-4-YL]BUTANOATE)
Descriptor: Bromodomain-containing protein 2, GLYCEROL, NICKEL (II) ION, ...
Authors:Tallant, C, Baud, M, Lin-Shiao, E, Chirgadze, D.Y, Ciulli, A.
Deposit date:2014-05-19
Release date:2014-10-29
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Chemical biology. A bump-and-hole approach to engineer controlled selectivity of BET bromodomain chemical probes.
Science, 346, 2014
3BHK
DownloadVisualize
BU of 3bhk by Molmil
Crystal structure of R49K mutant of monomeric sarcosine oxidase crystallized in phosphate as precipitant
Descriptor: CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Hassan-Abdallah, A, Zhao, G, Chen, Z, Mathews, F.S, Jorns, M.S.
Deposit date:2007-11-28
Release date:2008-02-26
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Arginine 49 is a bifunctional residue important in catalysis and biosynthesis of monomeric sarcosine oxidase: a context-sensitive model for the electrostatic impact of arginine to lysine mutations.
Biochemistry, 47, 2008
4NGO
DownloadVisualize
BU of 4ngo by Molmil
Previously de-ionized HEW lysozyme batch crystallized in 1.0 M CoCl2
Descriptor: CHLORIDE ION, COBALT (II) ION, Lysozyme C
Authors:Benas, P, Legrand, L, Ries-Kautt, M.
Deposit date:2013-11-02
Release date:2014-05-28
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Weak protein-cationic co-ion interactions addressed by X-ray crystallography and mass spectrometry.
Acta Crystallogr.,Sect.D, 70, 2014
4NGW
DownloadVisualize
BU of 4ngw by Molmil
Dialyzed HEW lysozyme batch crystallized in 0.5 M YbCl3 and collected at 100 K
Descriptor: CHLORIDE ION, Lysozyme C, YTTERBIUM (III) ION
Authors:Benas, P, Legrand, L, Ries-Kautt, M.
Deposit date:2013-11-03
Release date:2014-05-28
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Weak protein-cationic co-ion interactions addressed by X-ray crystallography and mass spectrometry.
Acta Crystallogr.,Sect.D, 70, 2014
4NGK
DownloadVisualize
BU of 4ngk by Molmil
Previously de-ionized HEW lysozyme batch crystallized in 0.2 M CoCl2
Descriptor: CHLORIDE ION, COBALT (II) ION, Lysozyme C
Authors:Benas, P, Legrand, L, Ries-Kautt, M.
Deposit date:2013-11-02
Release date:2014-05-28
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Weak protein-cationic co-ion interactions addressed by X-ray crystallography and mass spectrometry.
Acta Crystallogr.,Sect.D, 70, 2014
4NIY
DownloadVisualize
BU of 4niy by Molmil
Crystal structure of trypsiligase (K60E/N143H/Y151H/D189K trypsin) complexed to YRH-ecotin (M84Y/M85R/A86H ecotin)
Descriptor: CALCIUM ION, Cationic trypsin, Ecotin, ...
Authors:Schoepfel, M, Parthier, C, Stubbs, M.T.
Deposit date:2013-11-08
Release date:2014-02-19
Last modified:2014-03-19
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:N-terminal protein modification by substrate-activated reverse proteolysis.
Angew.Chem.Int.Ed.Engl., 53, 2014
3E26
DownloadVisualize
BU of 3e26 by Molmil
Crystal structure of M. tuberculosis glucosyl-3-phosphoglycerate synthase
Descriptor: Putative uncharacterized protein
Authors:Pereira, P.J.B, Empadinhas, N, Costa, M.S, Macedo-Ribeiro, S.
Deposit date:2008-08-05
Release date:2008-12-02
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Mycobacterium tuberculosis glucosyl-3-phosphoglycerate synthase: structure of a key enzyme in methylglucose lipopolysaccharide biosynthesis
Plos One, 3, 2008
3EIU
DownloadVisualize
BU of 3eiu by Molmil
A second transient position of ATP on its trail to the nucleotide-binding site of subunit B of the motor protein A1Ao ATP synthase
Descriptor: 4-(2-AMINOETHYL)BENZENESULFONYL FLUORIDE, ADENOSINE-5'-TRIPHOSPHATE, V-type ATP synthase beta chain
Authors:Manimekalai, S.M.S, Kumar, A, Balakrishna, A.M, Gruber, G.
Deposit date:2008-09-17
Release date:2009-02-10
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.43 Å)
Cite:A second transient position of ATP on its trail to the nucleotide-binding site of subunit B of the motor protein A(1)A(O) ATP synthase
J.Struct.Biol., 166, 2009
3ECH
DownloadVisualize
BU of 3ech by Molmil
The MarR-family repressor MexR in complex with its antirepressor ArmR
Descriptor: 25-mer fragment of protein ArmR, Multidrug resistance operon repressor
Authors:Wilke, M.S, Strynadka, N.C.J.
Deposit date:2008-08-30
Release date:2008-10-21
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.802 Å)
Cite:The crystal structure of MexR from Pseudomonas aeruginosa in complex with its antirepressor ArmR
Proc.Natl.Acad.Sci.Usa, 105, 2008
3E7B
DownloadVisualize
BU of 3e7b by Molmil
Crystal Structure of Protein Phosphatase-1 Bound to the natural toxin inhibitor Tautomycin
Descriptor: (2Z)-2-[(1R)-3-{[(1R,2S,3R,6S,7S,10R)-10-{(2S,3S,6R,8S,9R)-3,9-dimethyl-8-[(3S)-3-methyl-4-oxopentyl]-1,7-dioxaspiro[5.5]undec-2-yl}-3,7-dihydroxy-2-methoxy-6-methyl-1-(1-methylethyl)-5-oxoundecyl]oxy}-1-hydroxy-3-oxopropyl]-3-methylbut-2-enedioic acid, AZIDE ION, CHLORIDE ION, ...
Authors:Kelker, M.S, Page, R, Peti, W.
Deposit date:2008-08-18
Release date:2008-11-04
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of protein phosphatase-1 bound to nodularin-R and tautomycin: a novel scaffold for structure-based drug design of serine/threonine phosphatase inhibitors
J.Mol.Biol., 385, 2009

224201

PDB entries from 2024-08-28

PDB statisticsPDBj update infoContact PDBjnumon